RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.8
HMGN1-220ENST00000492280 SHROOM4Q9ULL8 1493 aa22.63■■□□□ 1.21
HMGN1-220ENST00000492280 CCDC180Q9P1Z9 1646 aa22.3■■□□□ 1.16
HMGN1-220ENST00000492280 ZCCHC6Q5VYS8 1495 aaKnown RBP22.18■■□□□ 1.14
HMGN1-220ENST00000492280 DCAF8L2P0C7V8 631 aa22.17■■□□□ 1.14
HMGN1-220ENST00000492280 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
HMGN1-220ENST00000492280 DCAF1Q9Y4B6 1507 aa21.36■■□□□ 1.01
HMGN1-220ENST00000492280 CHIC1Q5VXU3 224 aa21.18■□□□□ 0.98
HMGN1-220ENST00000492280 MYO15BQ96JP2 1530 aa21.18■□□□□ 0.98
HMGN1-220ENST00000492280 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
HMGN1-220ENST00000492280 ABCC9O60706 1549 aa21.13■□□□□ 0.97
HMGN1-220ENST00000492280 RSF1Q96T23 1441 aaPredicted RBP20.76■□□□□ 0.91
HMGN1-220ENST00000492280 LOC105371045A0A1W2PR82 267 aa20.7■□□□□ 0.9
HMGN1-220ENST00000492280 NACADO15069 1562 aa20.67■□□□□ 0.9
HMGN1-220ENST00000492280 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
HMGN1-220ENST00000492280 RB1CC1Q8TDY2 1594 aa20.64■□□□□ 0.9
HMGN1-220ENST00000492280 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
HMGN1-220ENST00000492280 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
HMGN1-220ENST00000492280 EHMT2Q96KQ7 1210 aa20.45■□□□□ 0.86
HMGN1-220ENST00000492280 FAM9AQ8IZU1 332 aaPredicted RBP20.45■□□□□ 0.86
HMGN1-220ENST00000492280 WIZO95785 1651 aa20.43■□□□□ 0.86
HMGN1-220ENST00000492280 TRIM41Q8WV44 630 aa20.4■□□□□ 0.86
HMGN1-220ENST00000492280 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
HMGN1-220ENST00000492280 PABPN1Q86U42 306 aaKnown RBP eCLIP20.24■□□□□ 0.83
HMGN1-220ENST00000492280 HRCP23327 699 aa20.17■□□□□ 0.82
HMGN1-220ENST00000492280 BAZ1AQ9NRL2 1556 aaPredicted RBP20.16■□□□□ 0.82
HMGN1-220ENST00000492280 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
HMGN1-220ENST00000492280 PPARGC1BQ86YN6 1023 aaKnown RBP20.06■□□□□ 0.8
HMGN1-220ENST00000492280 ABCC8Q09428 1581 aa19.98■□□□□ 0.79
HMGN1-220ENST00000492280 BICRAQ9NZM4 1560 aa19.97■□□□□ 0.79
HMGN1-220ENST00000492280 TOP2AP11388 1531 aaKnown RBP19.97■□□□□ 0.79
HMGN1-220ENST00000492280 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
HMGN1-220ENST00000492280 CCDC88BA6NC98 1476 aa19.95■□□□□ 0.78
HMGN1-220ENST00000492280 SMARCA2P51531 1590 aa19.91■□□□□ 0.78
HMGN1-220ENST00000492280 TRIM26Q12899 539 aaPredicted RBP19.91■□□□□ 0.78
HMGN1-220ENST00000492280 TTBK1Q5TCY1 1321 aaPredicted RBP19.72■□□□□ 0.75
HMGN1-220ENST00000492280 SOGA1O94964 1423 aa19.71■□□□□ 0.75
HMGN1-220ENST00000492280 RUSC2Q8N2Y8 1516 aa19.67■□□□□ 0.74
HMGN1-220ENST00000492280 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
HMGN1-220ENST00000492280 BAZ1BQ9UIG0 1483 aaKnown RBP19.56■□□□□ 0.72
HMGN1-220ENST00000492280 PEG3Q9GZU2 1588 aa19.56■□□□□ 0.72
HMGN1-220ENST00000492280 WRNQ14191 1432 aaPredicted RBP eCLIP19.52■□□□□ 0.72
HMGN1-220ENST00000492280 UBTFP17480 764 aaKnown RBP19.51■□□□□ 0.71
HMGN1-220ENST00000492280 SYNJ1O43426 1573 aa19.5■□□□□ 0.71
HMGN1-220ENST00000492280 CEP162Q5TB80 1403 aa19.48■□□□□ 0.71
HMGN1-220ENST00000492280 CSRNP3Q8WYN3 585 aa19.47■□□□□ 0.71
HMGN1-220ENST00000492280 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
HMGN1-220ENST00000492280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.38■□□□□ 0.69
HMGN1-220ENST00000492280 TNIKQ9UKE5 1360 aa19.34■□□□□ 0.69
HMGN1-220ENST00000492280 GOLGA3Q08378 1498 aa19.3■□□□□ 0.68
HMGN1-220ENST00000492280 EEA1Q15075 1411 aa19.3■□□□□ 0.68
HMGN1-220ENST00000492280 ZEB1P37275 1124 aaPredicted RBP19.24■□□□□ 0.67
HMGN1-220ENST00000492280 RAPGEF2Q9Y4G8 1499 aa19.22■□□□□ 0.67
HMGN1-220ENST00000492280 CCER1Q8TC90 406 aaPredicted RBP19.22■□□□□ 0.67
HMGN1-220ENST00000492280 CEP164Q9UPV0 1460 aa19.19■□□□□ 0.66
HMGN1-220ENST00000492280 NCAPD3P42695 1498 aa19.15■□□□□ 0.66
HMGN1-220ENST00000492280 TOP2BQ02880 1626 aa19.15■□□□□ 0.66
HMGN1-220ENST00000492280 CLIP1P30622 1438 aa19.14■□□□□ 0.65
HMGN1-220ENST00000492280 KIF21BO75037 1637 aa19.13■□□□□ 0.65
HMGN1-220ENST00000492280 HMGXB3Q12766 1538 aa19.13■□□□□ 0.65
HMGN1-220ENST00000492280 CUX1P39880 1505 aa19.09■□□□□ 0.65
HMGN1-220ENST00000492280 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
HMGN1-220ENST00000492280 HNRNPUL2Q1KMD3 747 aaKnown RBP19.04■□□□□ 0.64
HMGN1-220ENST00000492280 CFTRP13569 1480 aa19■□□□□ 0.63
HMGN1-220ENST00000492280 VPS8Q8N3P4 1428 aa18.98■□□□□ 0.63
HMGN1-220ENST00000492280 APLP2Q06481 763 aa18.93■□□□□ 0.62
HMGN1-220ENST00000492280 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
HMGN1-220ENST00000492280 PRXQ9BXM0 1461 aa18.91■□□□□ 0.62
HMGN1-220ENST00000492280 KIF27Q86VH2 1401 aa18.88■□□□□ 0.61
HMGN1-220ENST00000492280 ARAP1Q96P48 1450 aa18.86■□□□□ 0.61
HMGN1-220ENST00000492280 CUX2O14529 1486 aa18.84■□□□□ 0.61
HMGN1-220ENST00000492280 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
HMGN1-220ENST00000492280 ERICH3Q5RHP9 1530 aa18.83■□□□□ 0.61
HMGN1-220ENST00000492280 KANK4Q5T7N3 995 aaPredicted RBP18.83■□□□□ 0.6
HMGN1-220ENST00000492280 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
HMGN1-220ENST00000492280 FGD5Q6ZNL6 1462 aa18.79■□□□□ 0.6
HMGN1-220ENST00000492280 NESP48681 1621 aa18.79■□□□□ 0.6
HMGN1-220ENST00000492280 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
HMGN1-220ENST00000492280 IGF1RP08069 1367 aa18.73■□□□□ 0.59
HMGN1-220ENST00000492280 FANCD2Q9BXW9 1451 aa18.72■□□□□ 0.59
HMGN1-220ENST00000492280 ARHGAP35Q9NRY4 1499 aa18.72■□□□□ 0.59
HMGN1-220ENST00000492280 RAD54L2Q9Y4B4 1467 aa18.7■□□□□ 0.58
HMGN1-220ENST00000492280 P3H3Q8IVL6 736 aa18.7■□□□□ 0.58
HMGN1-220ENST00000492280 DIEXFQ68CQ4 756 aaKnown RBP18.69■□□□□ 0.58
HMGN1-220ENST00000492280 ITGAEP38570 1179 aa18.68■□□□□ 0.58
HMGN1-220ENST00000492280 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
HMGN1-220ENST00000492280 ATP1B4Q9UN42 357 aaPredicted RBP18.61■□□□□ 0.57
HMGN1-220ENST00000492280 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.56
HMGN1-220ENST00000492280 SCAF1Q9H7N4 1312 aaKnown RBP18.58■□□□□ 0.56
HMGN1-220ENST00000492280 TOPBP1Q92547 1522 aa18.57■□□□□ 0.56
HMGN1-220ENST00000492280 ZNF316A6NFI3 1004 aaPredicted RBP18.54■□□□□ 0.56
HMGN1-220ENST00000492280 DNMBPQ6XZF7 1577 aa18.54■□□□□ 0.56
HMGN1-220ENST00000492280 FHOD3Q2V2M9 1422 aa18.5■□□□□ 0.55
HMGN1-220ENST00000492280 URB2Q14146 1524 aaKnown RBP18.49■□□□□ 0.55
HMGN1-220ENST00000492280 TDRD9Q8NDG6 1382 aaKnown RBP18.49■□□□□ 0.55
HMGN1-220ENST00000492280 DHX57Q6P158 1386 aaKnown RBP18.48■□□□□ 0.55
HMGN1-220ENST00000492280 NEUROD1Q13562 356 aa18.48■□□□□ 0.55
HMGN1-220ENST00000492280 CCNB3Q8WWL7 1395 aa18.47■□□□□ 0.55
HMGN1-220ENST00000492280 RRBP1Q9P2E9 1410 aaKnown RBP18.46■□□□□ 0.55
HMGN1-220ENST00000492280 ABCA10Q8WWZ4 1543 aa18.46■□□□□ 0.55
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