RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 NISCHQ9Y2I1 1504 aa14.59□□□□□ -0.07
NPHP3-208ENST00000490993 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
NPHP3-208ENST00000490993 SHROOM4Q9ULL8 1493 aa12.64□□□□□ -0.39
NPHP3-208ENST00000490993 SUPT5HO00267 1087 aaKnown RBP12.52□□□□□ -0.4
NPHP3-208ENST00000490993 CCDC180Q9P1Z9 1646 aa12.43□□□□□ -0.42
NPHP3-208ENST00000490993 ZCCHC6Q5VYS8 1495 aaKnown RBP12.23□□□□□ -0.45
NPHP3-208ENST00000490993 DCAF1Q9Y4B6 1507 aa11.94□□□□□ -0.5
NPHP3-208ENST00000490993 ABCC9O60706 1549 aa11.94□□□□□ -0.5
NPHP3-208ENST00000490993 CHIC1Q5VXU3 224 aa11.78□□□□□ -0.52
NPHP3-208ENST00000490993 TRIM41Q8WV44 630 aa11.77□□□□□ -0.52
NPHP3-208ENST00000490993 NACADO15069 1562 aa11.74□□□□□ -0.53
NPHP3-208ENST00000490993 SCRIBQ14160 1630 aa11.73□□□□□ -0.53
NPHP3-208ENST00000490993 MYO15BQ96JP2 1530 aa11.68□□□□□ -0.54
NPHP3-208ENST00000490993 RB1CC1Q8TDY2 1594 aa11.66□□□□□ -0.54
NPHP3-208ENST00000490993 FAM9AQ8IZU1 332 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-208ENST00000490993 EHMT2Q96KQ7 1210 aa11.55□□□□□ -0.56
NPHP3-208ENST00000490993 PCGF6Q9BYE7 350 aa11.5□□□□□ -0.57
NPHP3-208ENST00000490993 RSF1Q96T23 1441 aaPredicted RBP11.49□□□□□ -0.57
NPHP3-208ENST00000490993 PABPN1Q86U42 306 aaKnown RBP eCLIP11.49□□□□□ -0.57
NPHP3-208ENST00000490993 APLP2Q06481 763 aa11.44□□□□□ -0.58
NPHP3-208ENST00000490993 LOC105371045A0A1W2PR82 267 aa11.42□□□□□ -0.58
NPHP3-208ENST00000490993 UBTFP17480 764 aaKnown RBP11.38□□□□□ -0.59
NPHP3-208ENST00000490993 TRIM26Q12899 539 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-208ENST00000490993 ZEB1P37275 1124 aaPredicted RBP11.37□□□□□ -0.59
NPHP3-208ENST00000490993 BAZ1AQ9NRL2 1556 aaPredicted RBP11.37□□□□□ -0.59
NPHP3-208ENST00000490993 CECR2Q9BXF3 1484 aa11.29□□□□□ -0.6
NPHP3-208ENST00000490993 MROH2BQ7Z745 1585 aa11.24□□□□□ -0.61
NPHP3-208ENST00000490993 HRCP23327 699 aa11.24□□□□□ -0.61
NPHP3-208ENST00000490993 TTBK1Q5TCY1 1321 aaPredicted RBP11.16□□□□□ -0.62
NPHP3-208ENST00000490993 RANGAP1P46060 587 aaPredicted RBP11.15□□□□□ -0.62
NPHP3-208ENST00000490993 CSRNP3Q8WYN3 585 aa11.15□□□□□ -0.62
NPHP3-208ENST00000490993 CCER1Q8TC90 406 aaPredicted RBP11.14□□□□□ -0.63
NPHP3-208ENST00000490993 BAZ1BQ9UIG0 1483 aaKnown RBP11.14□□□□□ -0.63
NPHP3-208ENST00000490993 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
NPHP3-208ENST00000490993 EEA1Q15075 1411 aa11.12□□□□□ -0.63
NPHP3-208ENST00000490993 WIZO95785 1651 aa11.12□□□□□ -0.63
NPHP3-208ENST00000490993 SMARCA4P51532 1647 aa11.11□□□□□ -0.63
NPHP3-208ENST00000490993 SMARCA2P51531 1590 aa11.09□□□□□ -0.63
NPHP3-208ENST00000490993 PPARGC1BQ86YN6 1023 aaKnown RBP11.08□□□□□ -0.64
NPHP3-208ENST00000490993 CCDC88BA6NC98 1476 aa11.07□□□□□ -0.64
NPHP3-208ENST00000490993 WRNQ14191 1432 aaPredicted RBP eCLIP11.04□□□□□ -0.64
NPHP3-208ENST00000490993 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
NPHP3-208ENST00000490993 GOLGA3Q08378 1498 aa10.97□□□□□ -0.65
NPHP3-208ENST00000490993 ATAD2BQ9ULI0 1458 aa10.96□□□□□ -0.65
NPHP3-208ENST00000490993 TNIKQ9UKE5 1360 aa10.94□□□□□ -0.66
NPHP3-208ENST00000490993 CEP164Q9UPV0 1460 aa10.92□□□□□ -0.66
NPHP3-208ENST00000490993 CEP162Q5TB80 1403 aa10.89□□□□□ -0.67
NPHP3-208ENST00000490993 ABCC8Q09428 1581 aa10.89□□□□□ -0.67
NPHP3-208ENST00000490993 HNRNPUL2Q1KMD3 747 aaKnown RBP10.87□□□□□ -0.67
NPHP3-208ENST00000490993 CLIP1P30622 1438 aa10.86□□□□□ -0.67
NPHP3-208ENST00000490993 KIF27Q86VH2 1401 aa10.86□□□□□ -0.67
NPHP3-208ENST00000490993 SOGA1O94964 1423 aa10.85□□□□□ -0.67
NPHP3-208ENST00000490993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.85□□□□□ -0.67
NPHP3-208ENST00000490993 BICRAQ9NZM4 1560 aa10.83□□□□□ -0.68
NPHP3-208ENST00000490993 CENPBP07199 599 aaPredicted RBP10.81□□□□□ -0.68
NPHP3-208ENST00000490993 NCAPD3P42695 1498 aa10.81□□□□□ -0.68
NPHP3-208ENST00000490993 UNC13AQ9UPW8 1703 aa10.79□□□□□ -0.68
NPHP3-208ENST00000490993 PEG3Q9GZU2 1588 aa10.77□□□□□ -0.69
NPHP3-208ENST00000490993 EIF4G1Q04637 1599 aaKnown RBP10.77□□□□□ -0.69
NPHP3-208ENST00000490993 ITGAEP38570 1179 aa10.76□□□□□ -0.69
NPHP3-208ENST00000490993 HMGXB3Q12766 1538 aa10.75□□□□□ -0.69
NPHP3-208ENST00000490993 CADPSQ9ULU8 1353 aa10.74□□□□□ -0.69
NPHP3-208ENST00000490993 FAM50AQ14320 339 aaKnown RBP10.71□□□□□ -0.7
NPHP3-208ENST00000490993 CUX2O14529 1486 aa10.69□□□□□ -0.7
NPHP3-208ENST00000490993 PELP1Q8IZL8 1130 aaKnown RBP10.68□□□□□ -0.7
NPHP3-208ENST00000490993 VPS8Q8N3P4 1428 aa10.68□□□□□ -0.7
NPHP3-208ENST00000490993 P3H3Q8IVL6 736 aa10.67□□□□□ -0.7
NPHP3-208ENST00000490993 PDS5BQ9NTI5 1447 aa10.66□□□□□ -0.7
NPHP3-208ENST00000490993 CARMIL1Q5VZK9 1371 aa10.66□□□□□ -0.7
NPHP3-208ENST00000490993 DIEXFQ68CQ4 756 aaKnown RBP10.65□□□□□ -0.7
NPHP3-208ENST00000490993 CFTRP13569 1480 aa10.64□□□□□ -0.71
NPHP3-208ENST00000490993 RUSC2Q8N2Y8 1516 aa10.64□□□□□ -0.71
NPHP3-208ENST00000490993 KIF21BO75037 1637 aa10.62□□□□□ -0.71
NPHP3-208ENST00000490993 ZNF316A6NFI3 1004 aaPredicted RBP10.61□□□□□ -0.71
NPHP3-208ENST00000490993 SYNJ1O43426 1573 aa10.61□□□□□ -0.71
NPHP3-208ENST00000490993 FHAD1B1AJZ9 1412 aa10.61□□□□□ -0.71
NPHP3-208ENST00000490993 RAPGEF2Q9Y4G8 1499 aa10.6□□□□□ -0.71
NPHP3-208ENST00000490993 TOP2BQ02880 1626 aa10.6□□□□□ -0.71
NPHP3-208ENST00000490993 FANCD2Q9BXW9 1451 aa10.6□□□□□ -0.71
NPHP3-208ENST00000490993 CDK11AQ9UQ88 783 aaPredicted RBP10.59□□□□□ -0.71
NPHP3-208ENST00000490993 FBLN2P98095 1184 aa10.56□□□□□ -0.72
NPHP3-208ENST00000490993 ERICH3Q5RHP9 1530 aa10.56□□□□□ -0.72
NPHP3-208ENST00000490993 CC2D2AQ9P2K1 1620 aa10.55□□□□□ -0.72
NPHP3-208ENST00000490993 MTUS2Q5JR59 1369 aa10.54□□□□□ -0.72
NPHP3-208ENST00000490993 FGD5Q6ZNL6 1462 aa10.53□□□□□ -0.72
NPHP3-208ENST00000490993 CLSPNQ9HAW4 1339 aa10.52□□□□□ -0.73
NPHP3-208ENST00000490993 YTHDC1Q96MU7 727 aaKnown RBP10.51□□□□□ -0.73
NPHP3-208ENST00000490993 TRIM52Q96A61 297 aa10.51□□□□□ -0.73
NPHP3-208ENST00000490993 ERCC6Q03468 1493 aa10.5□□□□□ -0.73
NPHP3-208ENST00000490993 CUX1P39880 1505 aa10.5□□□□□ -0.73
NPHP3-208ENST00000490993 CHMP7Q8WUX9 453 aaPredicted RBP10.5□□□□□ -0.73
NPHP3-208ENST00000490993 IGF1RP08069 1367 aa10.49□□□□□ -0.73
NPHP3-208ENST00000490993 ACIN1Q9UKV3 1341 aaKnown RBP10.49□□□□□ -0.73
NPHP3-208ENST00000490993 NEUROD1Q13562 356 aa10.49□□□□□ -0.73
NPHP3-208ENST00000490993 CCNB3Q8WWL7 1395 aa10.49□□□□□ -0.73
NPHP3-208ENST00000490993 FMN1Q68DA7 1419 aa10.48□□□□□ -0.73
NPHP3-208ENST00000490993 PRXQ9BXM0 1461 aa10.48□□□□□ -0.73
NPHP3-208ENST00000490993 BIVM-ERCC5R4GMW8 1640 aa10.47□□□□□ -0.73
NPHP3-208ENST00000490993 TDRD9Q8NDG6 1382 aaKnown RBP10.45□□□□□ -0.74
NPHP3-208ENST00000490993 KANK4Q5T7N3 995 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms