RNA–Protein interactions for RNA: ENST00000489421.1

SCMH1-216, Transcript of Scm polycomb group protein homolog 1, humanhuman

TSL 3

Gene SCMH1, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCMH1-216ENST00000489421 AEBP2Q6ZN18 517 aaPredicted RBP25.13■■□□□ 1.61
SCMH1-216ENST00000489421 CHIC1Q5VXU3 224 aa24.08■■□□□ 1.45
SCMH1-216ENST00000489421 SENP3Q9H4L4 574 aaPredicted RBP21.3■■□□□ 1
SCMH1-216ENST00000489421 PHF23Q9BUL5 403 aaPredicted RBP21.18■□□□□ 0.98
SCMH1-216ENST00000489421 FOXD1Q16676 465 aa19.88■□□□□ 0.77
SCMH1-216ENST00000489421 PLPPR3Q6T4P5 718 aa19.32■□□□□ 0.68
SCMH1-216ENST00000489421 PPP6R1Q9UPN7 881 aa18.82■□□□□ 0.6
SCMH1-216ENST00000489421 ADRA2BP18089 450 aa18.76■□□□□ 0.59
SCMH1-216ENST00000489421 PIAS4Q8N2W9 510 aaPredicted RBP18.61■□□□□ 0.57
SCMH1-216ENST00000489421 MSH5O43196 834 aa18.43■□□□□ 0.54
SCMH1-216ENST00000489421 POTEDQ86YR6 584 aa17.58■□□□□ 0.4
SCMH1-216ENST00000489421 MAPK8IP2Q13387 824 aaPredicted RBP17.16■□□□□ 0.34
SCMH1-216ENST00000489421 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
SCMH1-216ENST00000489421 PPP4R3CPQ6ZMV5 832 aa17■□□□□ 0.31
SCMH1-216ENST00000489421 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
SCMH1-216ENST00000489421 NISCHQ9Y2I1 1504 aa16.94■□□□□ 0.3
SCMH1-216ENST00000489421 CNKSR2Q8WXI2 1034 aa16.59■□□□□ 0.25
SCMH1-216ENST00000489421 HOXD11P31277 338 aaPredicted RBP16.45■□□□□ 0.22
SCMH1-216ENST00000489421 RNF216Q9NWF9 866 aaPredicted RBP16.38■□□□□ 0.21
SCMH1-216ENST00000489421 NCBP3Q53F19 620 aaKnown RBP16.36■□□□□ 0.21
SCMH1-216ENST00000489421 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
SCMH1-216ENST00000489421 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
SCMH1-216ENST00000489421 KCNA4P22459 653 aa16.16■□□□□ 0.18
SCMH1-216ENST00000489421 RNF39Q9H2S5 420 aa15.8■□□□□ 0.12
SCMH1-216ENST00000489421 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
SCMH1-216ENST00000489421 CACNB1Q02641 598 aaPredicted RBP15.66■□□□□ 0.1
SCMH1-216ENST00000489421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.095e-7■□□□□ 9.9
SCMH1-216ENST00000489421 C1QBPQ07021 282 aaKnown RBP15.53■□□□□ 0.08
SCMH1-216ENST00000489421 SLC4A2P04920 1241 aa15.44■□□□□ 0.06
SCMH1-216ENST00000489421 U3KPZ7 1027 aaPredicted RBP15.4■□□□□ 0.06
SCMH1-216ENST00000489421 SLC4A1APQ9BWU0 796 aaKnown RBP15.27■□□□□ 0.04
SCMH1-216ENST00000489421 CCDC180Q9P1Z9 1646 aa15.27■□□□□ 0.03
SCMH1-216ENST00000489421 SPINK5Q9NQ38 1064 aaPredicted RBP15.1■□□□□ 0.01
SCMH1-216ENST00000489421 CAPN15O75808 1086 aa15□□□□□ -0.01
SCMH1-216ENST00000489421 ABCC9O60706 1549 aa14.97□□□□□ -0.01
SCMH1-216ENST00000489421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
SCMH1-216ENST00000489421 MYCNP04198 464 aaPredicted RBP14.95□□□□□ -0.02
SCMH1-216ENST00000489421 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
SCMH1-216ENST00000489421 FOXD4L1Q9NU39 408 aa14.95□□□□□ -0.02
SCMH1-216ENST00000489421 ZBTB22O15209 634 aa14.91□□□□□ -0.02
SCMH1-216ENST00000489421 SAMD1Q6SPF0 538 aaPredicted RBP14.9□□□□□ -0.02
SCMH1-216ENST00000489421 DSG3P32926 999 aa14.89□□□□□ -0.03
SCMH1-216ENST00000489421 APLP2Q06481 763 aa14.87□□□□□ -0.03
SCMH1-216ENST00000489421 TRHP20396 242 aaPredicted RBP14.84□□□□□ -0.03
SCMH1-216ENST00000489421 ZNF219Q9P2Y4 722 aaPredicted RBP14.79□□□□□ -0.04
SCMH1-216ENST00000489421 ABCB7O75027 752 aa14.72□□□□□ -0.05
SCMH1-216ENST00000489421 ATF5Q9Y2D1 282 aaPredicted RBP14.66□□□□□ -0.06
SCMH1-216ENST00000489421 POLA2Q14181 598 aa14.51□□□□□ -0.09
SCMH1-216ENST00000489421 ATXN8OSP0DMR3 200 aa14.44□□□□□ -0.1
SCMH1-216ENST00000489421 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
SCMH1-216ENST00000489421 EHMT2Q96KQ7 1210 aa14.37□□□□□ -0.11
SCMH1-216ENST00000489421 UNC13AQ9UPW8 1703 aa14.35□□□□□ -0.11
SCMH1-216ENST00000489421 RB1CC1Q8TDY2 1594 aa14.34□□□□□ -0.11
SCMH1-216ENST00000489421 NACADO15069 1562 aa14.26□□□□□ -0.13
SCMH1-216ENST00000489421 ZBTB12Q9Y330 459 aaPredicted RBP14.18□□□□□ -0.14
SCMH1-216ENST00000489421 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
SCMH1-216ENST00000489421 ZCCHC6Q5VYS8 1495 aaKnown RBP14.1□□□□□ -0.15
SCMH1-216ENST00000489421 MYO15BQ96JP2 1530 aa14.1□□□□□ -0.15
SCMH1-216ENST00000489421 OSCARQ8IYS5 282 aa14.06□□□□□ -0.16
SCMH1-216ENST00000489421 BICRAQ9NZM4 1560 aa14.05□□□□□ -0.16
SCMH1-216ENST00000489421 DCAF1Q9Y4B6 1507 aa14□□□□□ -0.17
SCMH1-216ENST00000489421 MKRN4PQ13434 485 aaPredicted RBP13.99□□□□□ -0.17
SCMH1-216ENST00000489421 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
SCMH1-216ENST00000489421 FBLN2P98095 1184 aa13.95□□□□□ -0.18
SCMH1-216ENST00000489421 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
SCMH1-216ENST00000489421 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
SCMH1-216ENST00000489421 PABPN1Q86U42 306 aaKnown RBP eCLIP13.86□□□□□ -0.19
SCMH1-216ENST00000489421 POTEHQ6S545 545 aa13.81□□□□□ -0.2
SCMH1-216ENST00000489421 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
SCMH1-216ENST00000489421 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
SCMH1-216ENST00000489421 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
SCMH1-216ENST00000489421 REM2Q8IYK8 340 aaPredicted RBP13.79□□□□□ -0.2
SCMH1-216ENST00000489421 CHRDL2Q6WN34 429 aa13.76□□□□□ -0.21
SCMH1-216ENST00000489421 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
SCMH1-216ENST00000489421 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
SCMH1-216ENST00000489421 ZNF692Q9BU19 519 aaPredicted RBP13.68□□□□□ -0.22
SCMH1-216ENST00000489421 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
SCMH1-216ENST00000489421 CC2D2AQ9P2K1 1620 aa13.63□□□□□ -0.23
SCMH1-216ENST00000489421 EIF4G1Q04637 1599 aaKnown RBP13.61□□□□□ -0.23
SCMH1-216ENST00000489421 PIP4P2Q8N4L2 257 aa13.51□□□□□ -0.25
SCMH1-216ENST00000489421 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.25
SCMH1-216ENST00000489421 SPDYE1Q8NFV5 336 aaPredicted RBP13.47□□□□□ -0.25
SCMH1-216ENST00000489421 CLEC11AQ9Y240 323 aa13.46□□□□□ -0.25
SCMH1-216ENST00000489421 CECR2Q9BXF3 1484 aa13.43□□□□□ -0.26
SCMH1-216ENST00000489421 SPDYE4A6NLX3 237 aa13.41□□□□□ -0.26
SCMH1-216ENST00000489421 PRKAR2AP13861 404 aaKnown RBP13.28□□□□□ -0.28
SCMH1-216ENST00000489421 SMARCA4P51532 1647 aa13.27□□□□□ -0.29
SCMH1-216ENST00000489421 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
SCMH1-216ENST00000489421 CHADLQ6NUI6 762 aa13.22□□□□□ -0.29
SCMH1-216ENST00000489421 PROM2Q8N271 834 aa13.17□□□□□ -0.3
SCMH1-216ENST00000489421 HAX1O00165 279 aa13.15□□□□□ -0.3
SCMH1-216ENST00000489421 ATAD2BQ9ULI0 1458 aa13.13□□□□□ -0.31
SCMH1-216ENST00000489421 STAG3Q9UJ98 1225 aa13.13□□□□□ -0.31
SCMH1-216ENST00000489421 PEG3Q9GZU2 1588 aa13.12□□□□□ -0.31
SCMH1-216ENST00000489421 BAZ1AQ9NRL2 1556 aaPredicted RBP13.12□□□□□ -0.31
SCMH1-216ENST00000489421 HMGXB3Q12766 1538 aa13.12□□□□□ -0.31
SCMH1-216ENST00000489421 NCAPD3P42695 1498 aa13.11□□□□□ -0.31
SCMH1-216ENST00000489421 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
SCMH1-216ENST00000489421 EVX2Q03828 476 aa13.09□□□□□ -0.31
SCMH1-216ENST00000489421 MROH2BQ7Z745 1585 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms