RNA–Protein interactions for RNA: ENST00000488596.5

CD46-215, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 872 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-215ENST00000488596 AEBP2Q6ZN18 517 aaPredicted RBP22.8■■□□□ 1.24
CD46-215ENST00000488596 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
CD46-215ENST00000488596 SENP3Q9H4L4 574 aaPredicted RBP19.63■□□□□ 0.73
CD46-215ENST00000488596 PHF23Q9BUL5 403 aaPredicted RBP19.25■□□□□ 0.67
CD46-215ENST00000488596 FOXD1Q16676 465 aa18.27■□□□□ 0.52
CD46-215ENST00000488596 POTEDQ86YR6 584 aa17.58■□□□□ 0.4
CD46-215ENST00000488596 MSH5O43196 834 aa17.36■□□□□ 0.37
CD46-215ENST00000488596 PIAS4Q8N2W9 510 aaPredicted RBP16.98■□□□□ 0.31
CD46-215ENST00000488596 PLPPR3Q6T4P5 718 aa16.87■□□□□ 0.29
CD46-215ENST00000488596 PPP6R1Q9UPN7 881 aa16.71■□□□□ 0.27
CD46-215ENST00000488596 ADRA2BP18089 450 aa16.63■□□□□ 0.25
CD46-215ENST00000488596 DMRT2Q9Y5R5 561 aa15.48■□□□□ 0.07
CD46-215ENST00000488596 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
CD46-215ENST00000488596 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
CD46-215ENST00000488596 CACNB1Q02641 598 aaPredicted RBP15.08■□□□□ 0
CD46-215ENST00000488596 DCAF8L1A6NGE4 600 aa14.79□□□□□ -0.04
CD46-215ENST00000488596 HOXD11P31277 338 aaPredicted RBP14.75□□□□□ -0.05
CD46-215ENST00000488596 RNF39Q9H2S5 420 aa14.73□□□□□ -0.05
CD46-215ENST00000488596 PPP4R3CPQ6ZMV5 832 aa14.71□□□□□ -0.05
CD46-215ENST00000488596 C1QBPQ07021 282 aaKnown RBP14.54□□□□□ -0.08
CD46-215ENST00000488596 CNKSR2Q8WXI2 1034 aa14.54□□□□□ -0.08
CD46-215ENST00000488596 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
CD46-215ENST00000488596 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
CD46-215ENST00000488596 NCBP3Q53F19 620 aaKnown RBP14.1□□□□□ -0.15
CD46-215ENST00000488596 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.174e-9■■□□□ 11.7
CD46-215ENST00000488596 NPM3O75607 178 aaKnown RBP13.96□□□□□ -0.17
CD46-215ENST00000488596 KCNA4P22459 653 aa13.74□□□□□ -0.21
CD46-215ENST00000488596 POTEHQ6S545 545 aa13.71□□□□□ -0.21
CD46-215ENST00000488596 U3KPZ7 1027 aaPredicted RBP13.66□□□□□ -0.22
CD46-215ENST00000488596 DSG3P32926 999 aa13.63□□□□□ -0.23
CD46-215ENST00000488596 CAPN15O75808 1086 aa13.59□□□□□ -0.23
CD46-215ENST00000488596 SPINK5Q9NQ38 1064 aaPredicted RBP13.55□□□□□ -0.24
CD46-215ENST00000488596 APLP2Q06481 763 aa13.37□□□□□ -0.27
CD46-215ENST00000488596 SLC4A2P04920 1241 aa13.34□□□□□ -0.27
CD46-215ENST00000488596 ZNF219Q9P2Y4 722 aaPredicted RBP13.3□□□□□ -0.28
CD46-215ENST00000488596 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.24□□□□□ -0.29
CD46-215ENST00000488596 TRHP20396 242 aaPredicted RBP13.24□□□□□ -0.29
CD46-215ENST00000488596 HNRNPUL2Q1KMD3 747 aaKnown RBP13.24□□□□□ -0.29
CD46-215ENST00000488596 ABCB7O75027 752 aa13.18□□□□□ -0.3
CD46-215ENST00000488596 SAMD1Q6SPF0 538 aaPredicted RBP13.11□□□□□ -0.31
CD46-215ENST00000488596 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
CD46-215ENST00000488596 SLC4A1APQ9BWU0 796 aaKnown RBP12.94□□□□□ -0.34
CD46-215ENST00000488596 CHRDL2Q6WN34 429 aa12.91□□□□□ -0.34
CD46-215ENST00000488596 MYCNP04198 464 aaPredicted RBP12.87□□□□□ -0.35
CD46-215ENST00000488596 POLA2Q14181 598 aa12.82□□□□□ -0.36
CD46-215ENST00000488596 FOXD4L1Q9NU39 408 aa12.76□□□□□ -0.37
CD46-215ENST00000488596 AKT1S1Q96B36 256 aa12.68□□□□□ -0.38
CD46-215ENST00000488596 SP7Q8TDD2 431 aaPredicted RBP12.67□□□□□ -0.38
CD46-215ENST00000488596 ZBTB22O15209 634 aa12.66□□□□□ -0.38
CD46-215ENST00000488596 ATF5Q9Y2D1 282 aaPredicted RBP12.65□□□□□ -0.38
CD46-215ENST00000488596 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
CD46-215ENST00000488596 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
CD46-215ENST00000488596 PIP4P2Q8N4L2 257 aa12.49□□□□□ -0.41
CD46-215ENST00000488596 OSCARQ8IYS5 282 aa12.41□□□□□ -0.42
CD46-215ENST00000488596 HAX1O00165 279 aa12.38□□□□□ -0.43
CD46-215ENST00000488596 FXR2P51116 673 aaKnown RBP eCLIP12.38□□□□□ -0.43
CD46-215ENST00000488596 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
CD46-215ENST00000488596 ATXN8OSP0DMR3 200 aa12.35□□□□□ -0.43
CD46-215ENST00000488596 SPDYE2BA6NHP3 402 aa12.17□□□□□ -0.46
CD46-215ENST00000488596 SPDYE6P0CI01 402 aa12.17□□□□□ -0.46
CD46-215ENST00000488596 SPDYE2Q495Y8 402 aa12.17□□□□□ -0.46
CD46-215ENST00000488596 EVX2Q03828 476 aa12.13□□□□□ -0.47
CD46-215ENST00000488596 CSRNP3Q8WYN3 585 aa12.1□□□□□ -0.47
CD46-215ENST00000488596 FBLN2P98095 1184 aa12.09□□□□□ -0.47
CD46-215ENST00000488596 SPDYE1Q8NFV5 336 aaPredicted RBP12.06□□□□□ -0.48
CD46-215ENST00000488596 PRKAR2AP13861 404 aaKnown RBP12.05□□□□□ -0.48
CD46-215ENST00000488596 MKRN4PQ13434 485 aaPredicted RBP12.05□□□□□ -0.48
CD46-215ENST00000488596 C19orf67A6NJJ6 358 aa12□□□□□ -0.49
CD46-215ENST00000488596 CLEC11AQ9Y240 323 aa11.98□□□□□ -0.49
CD46-215ENST00000488596 EHMT2Q96KQ7 1210 aa11.94□□□□□ -0.5
CD46-215ENST00000488596 SSUH2Q9Y2M2 353 aa11.94□□□□□ -0.5
CD46-215ENST00000488596 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
CD46-215ENST00000488596 GABBR2O75899 941 aa11.89□□□□□ -0.51
CD46-215ENST00000488596 LHX8Q68G74 356 aa11.86□□□□□ -0.51
CD46-215ENST00000488596 PRR29P0C7W0 189 aa11.76□□□□□ -0.53
CD46-215ENST00000488596 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
CD46-215ENST00000488596 CLCN6P51797 869 aa11.72□□□□□ -0.53
CD46-215ENST00000488596 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
CD46-215ENST00000488596 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
CD46-215ENST00000488596 POTEIP0CG38 1075 aa11.61□□□□□ -0.55
CD46-215ENST00000488596 FARP1Q9Y4F1 1045 aaPredicted RBP11.61□□□□□ -0.55
CD46-215ENST00000488596 DCBLD2Q96PD2 775 aa11.51□□□□□ -0.57
CD46-215ENST00000488596 ZNF579Q8NAF0 562 aaKnown RBP11.49□□□□□ -0.57
CD46-215ENST00000488596 SPDYE4A6NLX3 237 aa11.47□□□□□ -0.57
CD46-215ENST00000488596 ZRANB1Q9UGI0 708 aa11.4□□□□□ -0.58
CD46-215ENST00000488596 PLSCR2Q9NRY7 297 aa11.39□□□□□ -0.59
CD46-215ENST00000488596 STAG3Q9UJ98 1225 aa11.38□□□□□ -0.59
CD46-215ENST00000488596 CREBZFQ9NS37 354 aa11.35□□□□□ -0.59
CD46-215ENST00000488596 GALR2O43603 387 aaPredicted RBP11.3□□□□□ -0.6
CD46-215ENST00000488596 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
CD46-215ENST00000488596 OTUD5Q96G74 571 aa11.29□□□□□ -0.6
CD46-215ENST00000488596 POTEB2H3BUK9 544 aa11.21□□□□□ -0.61
CD46-215ENST00000488596 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
CD46-215ENST00000488596 PROM2Q8N271 834 aa11.2□□□□□ -0.62
CD46-215ENST00000488596 POTEMA6NI47 508 aa11.18□□□□□ -0.62
CD46-215ENST00000488596 PHF12Q96QT6 1004 aa11.17□□□□□ -0.62
CD46-215ENST00000488596 MNX1P50219 401 aaPredicted RBP11.14□□□□□ -0.63
CD46-215ENST00000488596 PCDH10Q9P2E7 1040 aa11.14□□□□□ -0.63
CD46-215ENST00000488596 POTEGQ6S5H5 508 aa11.12□□□□□ -0.63
CD46-215ENST00000488596 ASTLQ6HA08 431 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms