RNA–Protein interactions for RNA: ENST00000488427.1

ITGB1-214, Transcript of integrin subunit beta 1, humanhuman

TSL 1 (best)

Gene ITGB1, Length 861 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-214ENST00000488427 AEBP2Q6ZN18 517 aaPredicted RBP25.13■■□□□ 1.61
ITGB1-214ENST00000488427 CHIC1Q5VXU3 224 aa23.8■■□□□ 1.4
ITGB1-214ENST00000488427 SENP3Q9H4L4 574 aaPredicted RBP21.53■■□□□ 1.04
ITGB1-214ENST00000488427 PHF23Q9BUL5 403 aaPredicted RBP21.21■□□□□ 0.99
ITGB1-214ENST00000488427 FOXD1Q16676 465 aa20.03■□□□□ 0.8
ITGB1-214ENST00000488427 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
ITGB1-214ENST00000488427 MSH5O43196 834 aa18.85■□□□□ 0.61
ITGB1-214ENST00000488427 PIAS4Q8N2W9 510 aaPredicted RBP18.74■□□□□ 0.59
ITGB1-214ENST00000488427 PPP6R1Q9UPN7 881 aa18.62■□□□□ 0.57
ITGB1-214ENST00000488427 ADRA2BP18089 450 aa18.58■□□□□ 0.56
ITGB1-214ENST00000488427 POTEDQ86YR6 584 aa18.53■□□□□ 0.56
ITGB1-214ENST00000488427 SCAF1Q9H7N4 1312 aaKnown RBP17.08■□□□□ 0.32
ITGB1-214ENST00000488427 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
ITGB1-214ENST00000488427 DMRT2Q9Y5R5 561 aa17.03■□□□□ 0.32
ITGB1-214ENST00000488427 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
ITGB1-214ENST00000488427 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
ITGB1-214ENST00000488427 HOXD11P31277 338 aaPredicted RBP16.36■□□□□ 0.21
ITGB1-214ENST00000488427 CNKSR2Q8WXI2 1034 aa16.36■□□□□ 0.21
ITGB1-214ENST00000488427 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
ITGB1-214ENST00000488427 RNF216Q9NWF9 866 aaPredicted RBP16.23■□□□□ 0.19
ITGB1-214ENST00000488427 RNF39Q9H2S5 420 aa16.03■□□□□ 0.16
ITGB1-214ENST00000488427 NCBP3Q53F19 620 aaKnown RBP16.01■□□□□ 0.15
ITGB1-214ENST00000488427 C1QBPQ07021 282 aaKnown RBP15.83■□□□□ 0.12
ITGB1-214ENST00000488427 DNAJC5BQ9UF47 199 aa15.83■□□□□ 0.12
ITGB1-214ENST00000488427 NPM3O75607 178 aaKnown RBP15.72■□□□□ 0.11
ITGB1-214ENST00000488427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.09
ITGB1-214ENST00000488427 KCNA4P22459 653 aa15.52■□□□□ 0.08
ITGB1-214ENST00000488427 U3KPZ7 1027 aaPredicted RBP15.24■□□□□ 0.03
ITGB1-214ENST00000488427 CAPN15O75808 1086 aa15.08■□□□□ 0
ITGB1-214ENST00000488427 SPINK5Q9NQ38 1064 aaPredicted RBP15.05■□□□□ -0
ITGB1-214ENST00000488427 SLC4A2P04920 1241 aa15.01□□□□□ -0.01
ITGB1-214ENST00000488427 DSG3P32926 999 aa14.98□□□□□ -0.01
ITGB1-214ENST00000488427 SLC4A1APQ9BWU0 796 aaKnown RBP14.92□□□□□ -0.02
ITGB1-214ENST00000488427 APLP2Q06481 763 aa14.91□□□□□ -0.02
ITGB1-214ENST00000488427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
ITGB1-214ENST00000488427 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
ITGB1-214ENST00000488427 TRHP20396 242 aaPredicted RBP14.81□□□□□ -0.04
ITGB1-214ENST00000488427 ZNF219Q9P2Y4 722 aaPredicted RBP14.8□□□□□ -0.04
ITGB1-214ENST00000488427 SAMD1Q6SPF0 538 aaPredicted RBP14.74□□□□□ -0.05
ITGB1-214ENST00000488427 ABCB7O75027 752 aa14.7□□□□□ -0.06
ITGB1-214ENST00000488427 MYCNP04198 464 aaPredicted RBP14.57□□□□□ -0.08
ITGB1-214ENST00000488427 POTEHQ6S545 545 aa14.52□□□□□ -0.09
ITGB1-214ENST00000488427 EHMT2Q96KQ7 1210 aa14.48□□□□□ -0.09
ITGB1-214ENST00000488427 FOXD4L1Q9NU39 408 aa14.42□□□□□ -0.1
ITGB1-214ENST00000488427 POLA2Q14181 598 aa14.37□□□□□ -0.11
ITGB1-214ENST00000488427 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
ITGB1-214ENST00000488427 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
ITGB1-214ENST00000488427 ZBTB22O15209 634 aa14.19□□□□□ -0.14
ITGB1-214ENST00000488427 ATF5Q9Y2D1 282 aaPredicted RBP14.18□□□□□ -0.14
ITGB1-214ENST00000488427 ZBTB12Q9Y330 459 aaPredicted RBP14.12□□□□□ -0.15
ITGB1-214ENST00000488427 CHRDL2Q6WN34 429 aa14.05□□□□□ -0.16
ITGB1-214ENST00000488427 ATXN8OSP0DMR3 200 aa13.99□□□□□ -0.17
ITGB1-214ENST00000488427 AKT1S1Q96B36 256 aa13.98□□□□□ -0.17
ITGB1-214ENST00000488427 OSCARQ8IYS5 282 aa13.92□□□□□ -0.18
ITGB1-214ENST00000488427 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
ITGB1-214ENST00000488427 FBLN2P98095 1184 aa13.73□□□□□ -0.21
ITGB1-214ENST00000488427 PITPNM1O00562 1244 aa13.68□□□□□ -0.22
ITGB1-214ENST00000488427 PIP4P2Q8N4L2 257 aa13.68□□□□□ -0.22
ITGB1-214ENST00000488427 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
ITGB1-214ENST00000488427 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
ITGB1-214ENST00000488427 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
ITGB1-214ENST00000488427 FXR2P51116 673 aaKnown RBP eCLIP13.57□□□□□ -0.24
ITGB1-214ENST00000488427 SP7Q8TDD2 431 aaPredicted RBP13.57□□□□□ -0.24
ITGB1-214ENST00000488427 MKRN4PQ13434 485 aaPredicted RBP13.52□□□□□ -0.25
ITGB1-214ENST00000488427 HAX1O00165 279 aa13.49□□□□□ -0.25
ITGB1-214ENST00000488427 ZNF692Q9BU19 519 aaPredicted RBP13.47□□□□□ -0.25
ITGB1-214ENST00000488427 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
ITGB1-214ENST00000488427 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
ITGB1-214ENST00000488427 SSUH2Q9Y2M2 353 aa13.42□□□□□ -0.26
ITGB1-214ENST00000488427 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
ITGB1-214ENST00000488427 PABPN1Q86U42 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
ITGB1-214ENST00000488427 EVX2Q03828 476 aa13.24□□□□□ -0.29
ITGB1-214ENST00000488427 PRR29P0C7W0 189 aa13.2□□□□□ -0.3
ITGB1-214ENST00000488427 CHADLQ6NUI6 762 aa13.15□□□□□ -0.3
ITGB1-214ENST00000488427 C19orf67A6NJJ6 358 aa13.14□□□□□ -0.31
ITGB1-214ENST00000488427 GABBR2O75899 941 aa12.98□□□□□ -0.33
ITGB1-214ENST00000488427 FKBP8Q14318 412 aa12.96□□□□□ -0.33
ITGB1-214ENST00000488427 FARP1Q9Y4F1 1045 aaPredicted RBP12.95□□□□□ -0.34
ITGB1-214ENST00000488427 SPDYE4A6NLX3 237 aa12.93□□□□□ -0.34
ITGB1-214ENST00000488427 CD44P16070 742 aaKnown RBP12.92□□□□□ -0.34
ITGB1-214ENST00000488427 STAG3Q9UJ98 1225 aa12.91□□□□□ -0.34
ITGB1-214ENST00000488427 CLCN6P51797 869 aa12.8□□□□□ -0.36
ITGB1-214ENST00000488427 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
ITGB1-214ENST00000488427 LHX8Q68G74 356 aa12.73□□□□□ -0.37
ITGB1-214ENST00000488427 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
ITGB1-214ENST00000488427 ZNF579Q8NAF0 562 aaKnown RBP12.7□□□□□ -0.38
ITGB1-214ENST00000488427 FBXO3Q9UK99 471 aa12.68□□□□□ -0.38
ITGB1-214ENST00000488427 POTEIP0CG38 1075 aa12.67□□□□□ -0.38
ITGB1-214ENST00000488427 PROM2Q8N271 834 aa12.66□□□□□ -0.38
ITGB1-214ENST00000488427 DCBLD2Q96PD2 775 aa12.66□□□□□ -0.38
ITGB1-214ENST00000488427 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
ITGB1-214ENST00000488427 NPM1P06748 294 aaKnown RBP eCLIP12.62□□□□□ -0.39
ITGB1-214ENST00000488427 GALR2O43603 387 aaPredicted RBP12.54□□□□□ -0.4
ITGB1-214ENST00000488427 MNX1P50219 401 aaPredicted RBP12.54□□□□□ -0.4
ITGB1-214ENST00000488427 PHF12Q96QT6 1004 aa12.5□□□□□ -0.41
ITGB1-214ENST00000488427 PLEKHG5O94827 1062 aa12.44□□□□□ -0.42
ITGB1-214ENST00000488427 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
ITGB1-214ENST00000488427 VASPP50552 380 aaPredicted RBP12.35□□□□□ -0.43
ITGB1-214ENST00000488427 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
ITGB1-214ENST00000488427 MIER1Q8N108 512 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms