RNA–Protein interactions for RNA: ENST00000488087.1

ECHDC1-217, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 3

Gene ECHDC1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-217ENST00000488087 AEBP2Q6ZN18 517 aaPredicted RBP20.25■□□□□ 0.83
ECHDC1-217ENST00000488087 CHIC1Q5VXU3 224 aa19.05■□□□□ 0.64
ECHDC1-217ENST00000488087 SENP3Q9H4L4 574 aaPredicted RBP17.46■□□□□ 0.39
ECHDC1-217ENST00000488087 PHF23Q9BUL5 403 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-217ENST00000488087 POTEDQ86YR6 584 aa16.5■□□□□ 0.23
ECHDC1-217ENST00000488087 FOXD1Q16676 465 aa16.27■□□□□ 0.2
ECHDC1-217ENST00000488087 MSH5O43196 834 aa15.5■□□□□ 0.07
ECHDC1-217ENST00000488087 PLPPR3Q6T4P5 718 aa15.36■□□□□ 0.05
ECHDC1-217ENST00000488087 PIAS4Q8N2W9 510 aaPredicted RBP15.14■□□□□ 0.01
ECHDC1-217ENST00000488087 PPP6R1Q9UPN7 881 aa14.8□□□□□ -0.04
ECHDC1-217ENST00000488087 ADRA2BP18089 450 aa14.76□□□□□ -0.05
ECHDC1-217ENST00000488087 DMRT2Q9Y5R5 561 aa13.74□□□□□ -0.21
ECHDC1-217ENST00000488087 MAPK8IP2Q13387 824 aaPredicted RBP13.68□□□□□ -0.22
ECHDC1-217ENST00000488087 SCAF1Q9H7N4 1312 aaKnown RBP13.63□□□□□ -0.23
ECHDC1-217ENST00000488087 CACNB1Q02641 598 aaPredicted RBP13.6□□□□□ -0.23
ECHDC1-217ENST00000488087 PPP4R3CPQ6ZMV5 832 aa13.54□□□□□ -0.24
ECHDC1-217ENST00000488087 KCNA4P22459 653 aa13.42□□□□□ -0.26
ECHDC1-217ENST00000488087 NCBP3Q53F19 620 aaKnown RBP13.27□□□□□ -0.29
ECHDC1-217ENST00000488087 DCAF8L1A6NGE4 600 aa13.26□□□□□ -0.29
ECHDC1-217ENST00000488087 CNKSR2Q8WXI2 1034 aa13.13□□□□□ -0.31
ECHDC1-217ENST00000488087 RNF39Q9H2S5 420 aa13.12□□□□□ -0.31
ECHDC1-217ENST00000488087 NPM3O75607 178 aaKnown RBP13.04□□□□□ -0.32
ECHDC1-217ENST00000488087 HOXD11P31277 338 aaPredicted RBP13.04□□□□□ -0.32
ECHDC1-217ENST00000488087 C1QBPQ07021 282 aaKnown RBP12.95□□□□□ -0.34
ECHDC1-217ENST00000488087 SLC4A1APQ9BWU0 796 aaKnown RBP12.84□□□□□ -0.35
ECHDC1-217ENST00000488087 RNF216Q9NWF9 866 aaPredicted RBP12.83□□□□□ -0.36
ECHDC1-217ENST00000488087 DNAJC5BQ9UF47 199 aa12.72□□□□□ -0.37
ECHDC1-217ENST00000488087 EHMT2Q96KQ7 1210 aa12.71□□□□□ -0.37
ECHDC1-217ENST00000488087 POTEHQ6S545 545 aa12.65□□□□□ -0.38
ECHDC1-217ENST00000488087 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.48□□□□□ -0.41
ECHDC1-217ENST00000488087 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
ECHDC1-217ENST00000488087 ZBTB22O15209 634 aa12.33□□□□□ -0.44
ECHDC1-217ENST00000488087 FOXD4L1Q9NU39 408 aa12.32□□□□□ -0.44
ECHDC1-217ENST00000488087 SLC4A2P04920 1241 aa12.25□□□□□ -0.45
ECHDC1-217ENST00000488087 CAPN15O75808 1086 aa12.13□□□□□ -0.47
ECHDC1-217ENST00000488087 DSG3P32926 999 aa12.12□□□□□ -0.47
ECHDC1-217ENST00000488087 U3KPZ7 1027 aaPredicted RBP12.09□□□□□ -0.47
ECHDC1-217ENST00000488087 MYCNP04198 464 aaPredicted RBP12.06□□□□□ -0.48
ECHDC1-217ENST00000488087 SPINK5Q9NQ38 1064 aaPredicted RBP12.05□□□□□ -0.48
ECHDC1-217ENST00000488087 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.9□□□□□ -0.5
ECHDC1-217ENST00000488087 HNRNPUL2Q1KMD3 747 aaKnown RBP11.9□□□□□ -0.5
ECHDC1-217ENST00000488087 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
ECHDC1-217ENST00000488087 ATXN8OSP0DMR3 200 aa11.85□□□□□ -0.51
ECHDC1-217ENST00000488087 APLP2Q06481 763 aa11.84□□□□□ -0.51
ECHDC1-217ENST00000488087 TRHP20396 242 aaPredicted RBP11.81□□□□□ -0.52
ECHDC1-217ENST00000488087 ZNF219Q9P2Y4 722 aaPredicted RBP11.79□□□□□ -0.52
ECHDC1-217ENST00000488087 ABCB7O75027 752 aa11.77□□□□□ -0.53
ECHDC1-217ENST00000488087 ATF5Q9Y2D1 282 aaPredicted RBP11.7□□□□□ -0.54
ECHDC1-217ENST00000488087 RBM42Q9BTD8 480 aaKnown RBP11.67□□□□□ -0.54
ECHDC1-217ENST00000488087 CHRDL2Q6WN34 429 aa11.54□□□□□ -0.56
ECHDC1-217ENST00000488087 SP7Q8TDD2 431 aaPredicted RBP11.39□□□□□ -0.59
ECHDC1-217ENST00000488087 POLA2Q14181 598 aa11.38□□□□□ -0.59
ECHDC1-217ENST00000488087 FKBP8Q14318 412 aa11.27□□□□□ -0.61
ECHDC1-217ENST00000488087 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
ECHDC1-217ENST00000488087 FBLN2P98095 1184 aa11.25□□□□□ -0.61
ECHDC1-217ENST00000488087 ZBTB12Q9Y330 459 aaPredicted RBP11.21□□□□□ -0.61
ECHDC1-217ENST00000488087 MKRN4PQ13434 485 aaPredicted RBP11.19□□□□□ -0.62
ECHDC1-217ENST00000488087 PIP4P2Q8N4L2 257 aa11.15□□□□□ -0.62
ECHDC1-217ENST00000488087 HAX1O00165 279 aa11.13□□□□□ -0.63
ECHDC1-217ENST00000488087 REM2Q8IYK8 340 aaPredicted RBP11.13□□□□□ -0.63
ECHDC1-217ENST00000488087 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
ECHDC1-217ENST00000488087 FXR2P51116 673 aaKnown RBP eCLIP11.01□□□□□ -0.65
ECHDC1-217ENST00000488087 PITPNM1O00562 1244 aa11□□□□□ -0.65
ECHDC1-217ENST00000488087 OSCARQ8IYS5 282 aa11□□□□□ -0.65
ECHDC1-217ENST00000488087 ZNF692Q9BU19 519 aaPredicted RBP10.93□□□□□ -0.66
ECHDC1-217ENST00000488087 SPDYE2BA6NHP3 402 aa10.91□□□□□ -0.66
ECHDC1-217ENST00000488087 SPDYE6P0CI01 402 aa10.91□□□□□ -0.66
ECHDC1-217ENST00000488087 SPDYE2Q495Y8 402 aa10.91□□□□□ -0.66
ECHDC1-217ENST00000488087 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
ECHDC1-217ENST00000488087 EVX2Q03828 476 aa10.85□□□□□ -0.67
ECHDC1-217ENST00000488087 PROM2Q8N271 834 aa10.83□□□□□ -0.68
ECHDC1-217ENST00000488087 FBXO3Q9UK99 471 aa10.82□□□□□ -0.68
ECHDC1-217ENST00000488087 SSUH2Q9Y2M2 353 aa10.81□□□□□ -0.68
ECHDC1-217ENST00000488087 PABPN1Q86U42 306 aaKnown RBP eCLIP10.78□□□□□ -0.68
ECHDC1-217ENST00000488087 PRKAR2AP13861 404 aaKnown RBP10.74□□□□□ -0.69
ECHDC1-217ENST00000488087 SPDYE1Q8NFV5 336 aaPredicted RBP10.69□□□□□ -0.7
ECHDC1-217ENST00000488087 CLEC11AQ9Y240 323 aa10.69□□□□□ -0.7
ECHDC1-217ENST00000488087 LHX8Q68G74 356 aa10.68□□□□□ -0.7
ECHDC1-217ENST00000488087 C19orf67A6NJJ6 358 aa10.67□□□□□ -0.7
ECHDC1-217ENST00000488087 GABBR2O75899 941 aa10.64□□□□□ -0.71
ECHDC1-217ENST00000488087 VASPP50552 380 aaPredicted RBP10.64□□□□□ -0.71
ECHDC1-217ENST00000488087 STAG3Q9UJ98 1225 aa10.63□□□□□ -0.71
ECHDC1-217ENST00000488087 AMER1Q5JTC6 1135 aaPredicted RBP10.55□□□□□ -0.72
ECHDC1-217ENST00000488087 PLCD3Q8N3E9 789 aa10.53□□□□□ -0.72
ECHDC1-217ENST00000488087 RTN4Q9NQC3 1192 aaKnown RBP10.52□□□□□ -0.73
ECHDC1-217ENST00000488087 IFNLR1Q8IU57 520 aaPredicted RBP10.5□□□□□ -0.73
ECHDC1-217ENST00000488087 MIER1Q8N108 512 aa10.5□□□□□ -0.73
ECHDC1-217ENST00000488087 CHADLQ6NUI6 762 aa10.48□□□□□ -0.73
ECHDC1-217ENST00000488087 KLHL34Q8N239 644 aa10.48□□□□□ -0.73
ECHDC1-217ENST00000488087 PLEKHG5O94827 1062 aa10.47□□□□□ -0.73
ECHDC1-217ENST00000488087 PRR29P0C7W0 189 aa10.46□□□□□ -0.73
ECHDC1-217ENST00000488087 CLCN6P51797 869 aa10.4□□□□□ -0.74
ECHDC1-217ENST00000488087 ZBTB47Q9UFB7 747 aaPredicted RBP10.38□□□□□ -0.75
ECHDC1-217ENST00000488087 CD44P16070 742 aaKnown RBP10.37□□□□□ -0.75
ECHDC1-217ENST00000488087 SPOCK2Q92563 424 aa10.37□□□□□ -0.75
ECHDC1-217ENST00000488087 POTEIP0CG38 1075 aa10.36□□□□□ -0.75
ECHDC1-217ENST00000488087 DCBLD2Q96PD2 775 aa10.32□□□□□ -0.76
ECHDC1-217ENST00000488087 CREBZFQ9NS37 354 aa10.31□□□□□ -0.76
ECHDC1-217ENST00000488087 FARP1Q9Y4F1 1045 aaPredicted RBP10.3□□□□□ -0.76
ECHDC1-217ENST00000488087 CIZ1Q9ULV3 898 aaPredicted RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms