RNA–Protein interactions for RNA: ENST00000486995.5

PTCD2-204, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 2

Gene PTCD2, Length 2,648 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-204ENST00000486995 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
PTCD2-204ENST00000486995 CCDC180Q9P1Z9 1646 aa22.08■■□□□ 1.12
PTCD2-204ENST00000486995 SHROOM4Q9ULL8 1493 aa21.93■■□□□ 1.1
PTCD2-204ENST00000486995 ZCCHC6Q5VYS8 1495 aaKnown RBP21.92■■□□□ 1.1
PTCD2-204ENST00000486995 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
PTCD2-204ENST00000486995 DCAF8L2P0C7V8 631 aa21.41■■□□□ 1.02
PTCD2-204ENST00000486995 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
PTCD2-204ENST00000486995 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
PTCD2-204ENST00000486995 MYO15BQ96JP2 1530 aa20.78■□□□□ 0.92
PTCD2-204ENST00000486995 ABCC9O60706 1549 aa20.64■□□□□ 0.89
PTCD2-204ENST00000486995 SCRIBQ14160 1630 aa20.62■□□□□ 0.89
PTCD2-204ENST00000486995 RSF1Q96T23 1441 aaPredicted RBP20.48■□□□□ 0.87
PTCD2-204ENST00000486995 NACADO15069 1562 aa20.44■□□□□ 0.86
PTCD2-204ENST00000486995 LOC105371045A0A1W2PR82 267 aa20.25■□□□□ 0.83
PTCD2-204ENST00000486995 RB1CC1Q8TDY2 1594 aa20.23■□□□□ 0.83
PTCD2-204ENST00000486995 CECR2Q9BXF3 1484 aa20.2■□□□□ 0.82
PTCD2-204ENST00000486995 MROH2BQ7Z745 1585 aa20.13■□□□□ 0.81
PTCD2-204ENST00000486995 PCGF6Q9BYE7 350 aa20.11■□□□□ 0.81
PTCD2-204ENST00000486995 HRCP23327 699 aa20.09■□□□□ 0.81
PTCD2-204ENST00000486995 TRIM41Q8WV44 630 aa20.05■□□□□ 0.8
PTCD2-204ENST00000486995 WIZO95785 1651 aa19.99■□□□□ 0.79
PTCD2-204ENST00000486995 BAZ1AQ9NRL2 1556 aaPredicted RBP19.91■□□□□ 0.78
PTCD2-204ENST00000486995 FAM9AQ8IZU1 332 aaPredicted RBP19.83■□□□□ 0.77
PTCD2-204ENST00000486995 TRIM26Q12899 539 aaPredicted RBP19.8■□□□□ 0.76
PTCD2-204ENST00000486995 UNC13AQ9UPW8 1703 aa19.77■□□□□ 0.76
PTCD2-204ENST00000486995 SMARCA4P51532 1647 aa19.74■□□□□ 0.75
PTCD2-204ENST00000486995 EIF4G1Q04637 1599 aaKnown RBP19.73■□□□□ 0.75
PTCD2-204ENST00000486995 TOP2AP11388 1531 aaKnown RBP19.71■□□□□ 0.75
PTCD2-204ENST00000486995 PPARGC1BQ86YN6 1023 aaKnown RBP19.64■□□□□ 0.73
PTCD2-204ENST00000486995 CCDC88BA6NC98 1476 aa19.63■□□□□ 0.73
PTCD2-204ENST00000486995 EHMT2Q96KQ7 1210 aa19.61■□□□□ 0.73
PTCD2-204ENST00000486995 SMARCA2P51531 1590 aa19.6■□□□□ 0.73
PTCD2-204ENST00000486995 BICRAQ9NZM4 1560 aa19.58■□□□□ 0.72
PTCD2-204ENST00000486995 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTCD2-204ENST00000486995 ABCC8Q09428 1581 aa19.5■□□□□ 0.71
PTCD2-204ENST00000486995 PEG3Q9GZU2 1588 aa19.41■□□□□ 0.7
PTCD2-204ENST00000486995 ZEB1P37275 1124 aaPredicted RBP19.33■□□□□ 0.69
PTCD2-204ENST00000486995 SOGA1O94964 1423 aa19.33■□□□□ 0.69
PTCD2-204ENST00000486995 ATAD2BQ9ULI0 1458 aa19.28■□□□□ 0.68
PTCD2-204ENST00000486995 EEA1Q15075 1411 aa19.25■□□□□ 0.67
PTCD2-204ENST00000486995 RUSC2Q8N2Y8 1516 aa19.24■□□□□ 0.67
PTCD2-204ENST00000486995 CSRNP3Q8WYN3 585 aa19.23■□□□□ 0.67
PTCD2-204ENST00000486995 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.67
PTCD2-204ENST00000486995 TNIKQ9UKE5 1360 aa19.21■□□□□ 0.67
PTCD2-204ENST00000486995 CEP162Q5TB80 1403 aa19.2■□□□□ 0.66
PTCD2-204ENST00000486995 BAZ1BQ9UIG0 1483 aaKnown RBP19.19■□□□□ 0.66
PTCD2-204ENST00000486995 SYNJ1O43426 1573 aa19.12■□□□□ 0.65
PTCD2-204ENST00000486995 UBTFP17480 764 aaKnown RBP19.1■□□□□ 0.65
PTCD2-204ENST00000486995 GOLGA3Q08378 1498 aa19.09■□□□□ 0.65
PTCD2-204ENST00000486995 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
PTCD2-204ENST00000486995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.99■□□□□ 0.63
PTCD2-204ENST00000486995 KIF21BO75037 1637 aa18.97■□□□□ 0.63
PTCD2-204ENST00000486995 TTBK1Q5TCY1 1321 aaPredicted RBP18.96■□□□□ 0.63
PTCD2-204ENST00000486995 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
PTCD2-204ENST00000486995 CCER1Q8TC90 406 aaPredicted RBP18.93■□□□□ 0.62
PTCD2-204ENST00000486995 TOP2BQ02880 1626 aa18.91■□□□□ 0.62
PTCD2-204ENST00000486995 HMGXB3Q12766 1538 aa18.91■□□□□ 0.62
PTCD2-204ENST00000486995 RAPGEF2Q9Y4G8 1499 aa18.86■□□□□ 0.61
PTCD2-204ENST00000486995 CLIP1P30622 1438 aa18.86■□□□□ 0.61
PTCD2-204ENST00000486995 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
PTCD2-204ENST00000486995 VPS8Q8N3P4 1428 aa18.78■□□□□ 0.6
PTCD2-204ENST00000486995 CFTRP13569 1480 aa18.75■□□□□ 0.59
PTCD2-204ENST00000486995 CUX1P39880 1505 aa18.75■□□□□ 0.59
PTCD2-204ENST00000486995 PRXQ9BXM0 1461 aa18.73■□□□□ 0.59
PTCD2-204ENST00000486995 ERICH3Q5RHP9 1530 aa18.7■□□□□ 0.58
PTCD2-204ENST00000486995 RANGAP1P46060 587 aaPredicted RBP18.68■□□□□ 0.58
PTCD2-204ENST00000486995 APLP2Q06481 763 aa18.65■□□□□ 0.58
PTCD2-204ENST00000486995 KIF27Q86VH2 1401 aa18.64■□□□□ 0.57
PTCD2-204ENST00000486995 HNRNPUL2Q1KMD3 747 aaKnown RBP18.6■□□□□ 0.57
PTCD2-204ENST00000486995 ARAP1Q96P48 1450 aa18.58■□□□□ 0.57
PTCD2-204ENST00000486995 CADPSQ9ULU8 1353 aa18.56■□□□□ 0.56
PTCD2-204ENST00000486995 PRDM2Q13029 1718 aa18.54■□□□□ 0.56
PTCD2-204ENST00000486995 DIEXFQ68CQ4 756 aaKnown RBP18.52■□□□□ 0.56
PTCD2-204ENST00000486995 IGF1RP08069 1367 aa18.48■□□□□ 0.55
PTCD2-204ENST00000486995 KANK4Q5T7N3 995 aaPredicted RBP18.47■□□□□ 0.55
PTCD2-204ENST00000486995 CUX2O14529 1486 aa18.46■□□□□ 0.55
PTCD2-204ENST00000486995 CC2D2AQ9P2K1 1620 aa18.45■□□□□ 0.54
PTCD2-204ENST00000486995 ARHGAP35Q9NRY4 1499 aa18.44■□□□□ 0.54
PTCD2-204ENST00000486995 ZNF316A6NFI3 1004 aaPredicted RBP18.43■□□□□ 0.54
PTCD2-204ENST00000486995 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
PTCD2-204ENST00000486995 FGD5Q6ZNL6 1462 aa18.41■□□□□ 0.54
PTCD2-204ENST00000486995 CARMIL1Q5VZK9 1371 aa18.37■□□□□ 0.53
PTCD2-204ENST00000486995 FANCD2Q9BXW9 1451 aa18.35■□□□□ 0.53
PTCD2-204ENST00000486995 RRBP1Q9P2E9 1410 aaKnown RBP18.35■□□□□ 0.53
PTCD2-204ENST00000486995 ACIN1Q9UKV3 1341 aaKnown RBP18.31■□□□□ 0.52
PTCD2-204ENST00000486995 DHX57Q6P158 1386 aaKnown RBP18.29■□□□□ 0.52
PTCD2-204ENST00000486995 NEUROD1Q13562 356 aa18.28■□□□□ 0.52
PTCD2-204ENST00000486995 CLSPNQ9HAW4 1339 aa18.28■□□□□ 0.52
PTCD2-204ENST00000486995 CCNB3Q8WWL7 1395 aa18.26■□□□□ 0.51
PTCD2-204ENST00000486995 DNMBPQ6XZF7 1577 aa18.26■□□□□ 0.51
PTCD2-204ENST00000486995 RAD54L2Q9Y4B4 1467 aa18.24■□□□□ 0.51
PTCD2-204ENST00000486995 MAP3K1Q13233 1512 aa18.23■□□□□ 0.51
PTCD2-204ENST00000486995 NESP48681 1621 aa18.23■□□□□ 0.51
PTCD2-204ENST00000486995 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
PTCD2-204ENST00000486995 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
PTCD2-204ENST00000486995 POLA1P09884 1462 aaPredicted RBP18.22■□□□□ 0.51
PTCD2-204ENST00000486995 TIAM1Q13009 1591 aa18.21■□□□□ 0.51
PTCD2-204ENST00000486995 CENPBP07199 599 aaPredicted RBP18.2■□□□□ 0.5
PTCD2-204ENST00000486995 LRRC9Q6ZRR7 1453 aa18.16■□□□□ 0.5
PTCD2-204ENST00000486995 FHAD1B1AJZ9 1412 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms