RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 AEBP2Q6ZN18 517 aaPredicted RBP26.64■■□□□ 1.86
SNRNP40-205ENST00000486941 CHIC1Q5VXU3 224 aa25.29■■□□□ 1.64
SNRNP40-205ENST00000486941 SENP3Q9H4L4 574 aaPredicted RBP22.46■■□□□ 1.19
SNRNP40-205ENST00000486941 PHF23Q9BUL5 403 aaPredicted RBP22.31■■□□□ 1.16
SNRNP40-205ENST00000486941 FOXD1Q16676 465 aa21.08■□□□□ 0.97
SNRNP40-205ENST00000486941 PLPPR3Q6T4P5 718 aa20.16■□□□□ 0.82
SNRNP40-205ENST00000486941 PPP6R1Q9UPN7 881 aa19.91■□□□□ 0.78
SNRNP40-205ENST00000486941 ADRA2BP18089 450 aa19.78■□□□□ 0.76
SNRNP40-205ENST00000486941 PIAS4Q8N2W9 510 aaPredicted RBP19.61■□□□□ 0.73
SNRNP40-205ENST00000486941 MSH5O43196 834 aa19.48■□□□□ 0.71
SNRNP40-205ENST00000486941 POTEDQ86YR6 584 aa18.96■□□□□ 0.63
SNRNP40-205ENST00000486941 MAPK8IP2Q13387 824 aaPredicted RBP18.18■□□□□ 0.5
SNRNP40-205ENST00000486941 DMRT2Q9Y5R5 561 aa17.9■□□□□ 0.46
SNRNP40-205ENST00000486941 SCAF1Q9H7N4 1312 aaKnown RBP17.84■□□□□ 0.45
SNRNP40-205ENST00000486941 PPP4R3CPQ6ZMV5 832 aa17.77■□□□□ 0.44
SNRNP40-205ENST00000486941 CNKSR2Q8WXI2 1034 aa17.34■□□□□ 0.37
SNRNP40-205ENST00000486941 HOXD11P31277 338 aaPredicted RBP17.31■□□□□ 0.36
SNRNP40-205ENST00000486941 RNF216Q9NWF9 866 aaPredicted RBP17.16■□□□□ 0.34
SNRNP40-205ENST00000486941 DCAF8L1A6NGE4 600 aa17.07■□□□□ 0.32
SNRNP40-205ENST00000486941 NCBP3Q53F19 620 aaKnown RBP16.96■□□□□ 0.31
SNRNP40-205ENST00000486941 NPM3O75607 178 aaKnown RBP16.91■□□□□ 0.3
SNRNP40-205ENST00000486941 RNF39Q9H2S5 420 aa16.76■□□□□ 0.27
SNRNP40-205ENST00000486941 KCNA4P22459 653 aa16.74■□□□□ 0.27
SNRNP40-205ENST00000486941 CACNB1Q02641 598 aaPredicted RBP16.68■□□□□ 0.26
SNRNP40-205ENST00000486941 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
SNRNP40-205ENST00000486941 C1QBPQ07021 282 aaKnown RBP16.42■□□□□ 0.22
SNRNP40-205ENST00000486941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.225e-13■■■■■ 27.2
SNRNP40-205ENST00000486941 SLC4A2P04920 1241 aa16.19■□□□□ 0.18
SNRNP40-205ENST00000486941 U3KPZ7 1027 aaPredicted RBP16.19■□□□□ 0.18
SNRNP40-205ENST00000486941 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
SNRNP40-205ENST00000486941 CAPN15O75808 1086 aa15.77■□□□□ 0.12
SNRNP40-205ENST00000486941 DSG3P32926 999 aa15.75■□□□□ 0.11
SNRNP40-205ENST00000486941 SLC4A1APQ9BWU0 796 aaKnown RBP15.72■□□□□ 0.11
SNRNP40-205ENST00000486941 TRHP20396 242 aaPredicted RBP15.58■□□□□ 0.08
SNRNP40-205ENST00000486941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.53■□□□□ 0.08
SNRNP40-205ENST00000486941 HNRNPUL2Q1KMD3 747 aaKnown RBP15.53■□□□□ 0.08
SNRNP40-205ENST00000486941 MYCNP04198 464 aaPredicted RBP15.52■□□□□ 0.08
SNRNP40-205ENST00000486941 SAMD1Q6SPF0 538 aaPredicted RBP15.52■□□□□ 0.08
SNRNP40-205ENST00000486941 ABCB7O75027 752 aa15.51■□□□□ 0.07
SNRNP40-205ENST00000486941 ZBTB22O15209 634 aa15.5■□□□□ 0.07
SNRNP40-205ENST00000486941 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
SNRNP40-205ENST00000486941 FOXD4L1Q9NU39 408 aa15.46■□□□□ 0.07
SNRNP40-205ENST00000486941 APLP2Q06481 763 aa15.44■□□□□ 0.06
SNRNP40-205ENST00000486941 ATF5Q9Y2D1 282 aaPredicted RBP15.38■□□□□ 0.05
SNRNP40-205ENST00000486941 POLA2Q14181 598 aa15.23■□□□□ 0.03
SNRNP40-205ENST00000486941 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
SNRNP40-205ENST00000486941 POTEHQ6S545 545 aa14.83□□□□□ -0.04
SNRNP40-205ENST00000486941 CSRNP3Q8WYN3 585 aa14.83□□□□□ -0.04
SNRNP40-205ENST00000486941 RBM42Q9BTD8 480 aaKnown RBP14.82□□□□□ -0.04
SNRNP40-205ENST00000486941 ZBTB12Q9Y330 459 aaPredicted RBP14.75□□□□□ -0.05
SNRNP40-205ENST00000486941 OSCARQ8IYS5 282 aa14.74□□□□□ -0.05
SNRNP40-205ENST00000486941 MKRN4PQ13434 485 aaPredicted RBP14.65□□□□□ -0.06
SNRNP40-205ENST00000486941 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
SNRNP40-205ENST00000486941 AKT1S1Q96B36 256 aa14.61□□□□□ -0.07
SNRNP40-205ENST00000486941 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
SNRNP40-205ENST00000486941 REM2Q8IYK8 340 aaPredicted RBP14.54□□□□□ -0.08
SNRNP40-205ENST00000486941 FBLN2P98095 1184 aa14.47□□□□□ -0.09
SNRNP40-205ENST00000486941 SPDYE2BA6NHP3 402 aa14.4□□□□□ -0.1
SNRNP40-205ENST00000486941 PITPNM1O00562 1244 aa14.4□□□□□ -0.1
SNRNP40-205ENST00000486941 SPDYE6P0CI01 402 aa14.4□□□□□ -0.1
SNRNP40-205ENST00000486941 SPDYE2Q495Y8 402 aa14.4□□□□□ -0.1
SNRNP40-205ENST00000486941 PIP4P2Q8N4L2 257 aa14.32□□□□□ -0.12
SNRNP40-205ENST00000486941 SSUH2Q9Y2M2 353 aa14.31□□□□□ -0.12
SNRNP40-205ENST00000486941 ZNF692Q9BU19 519 aaPredicted RBP14.27□□□□□ -0.13
SNRNP40-205ENST00000486941 FXR2P51116 673 aaKnown RBP eCLIP14.25□□□□□ -0.13
SNRNP40-205ENST00000486941 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
SNRNP40-205ENST00000486941 CLEC11AQ9Y240 323 aa14.1□□□□□ -0.15
SNRNP40-205ENST00000486941 SPDYE1Q8NFV5 336 aaPredicted RBP14.09□□□□□ -0.15
SNRNP40-205ENST00000486941 EVX2Q03828 476 aa14□□□□□ -0.17
SNRNP40-205ENST00000486941 PRKAR2AP13861 404 aaKnown RBP13.98□□□□□ -0.17
SNRNP40-205ENST00000486941 HAX1O00165 279 aa13.94□□□□□ -0.18
SNRNP40-205ENST00000486941 SP7Q8TDD2 431 aaPredicted RBP13.94□□□□□ -0.18
SNRNP40-205ENST00000486941 CHADLQ6NUI6 762 aa13.93□□□□□ -0.18
SNRNP40-205ENST00000486941 SPDYE4A6NLX3 237 aa13.87□□□□□ -0.19
SNRNP40-205ENST00000486941 PRR29P0C7W0 189 aa13.86□□□□□ -0.19
SNRNP40-205ENST00000486941 C19orf67A6NJJ6 358 aa13.79□□□□□ -0.2
SNRNP40-205ENST00000486941 CREBZFQ9NS37 354 aa13.68□□□□□ -0.22
SNRNP40-205ENST00000486941 FARP1Q9Y4F1 1045 aaPredicted RBP13.67□□□□□ -0.22
SNRNP40-205ENST00000486941 PROM2Q8N271 834 aa13.66□□□□□ -0.22
SNRNP40-205ENST00000486941 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
SNRNP40-205ENST00000486941 GABBR2O75899 941 aa13.56□□□□□ -0.24
SNRNP40-205ENST00000486941 CD44P16070 742 aaKnown RBP13.53□□□□□ -0.24
SNRNP40-205ENST00000486941 MNX1P50219 401 aaPredicted RBP13.53□□□□□ -0.24
SNRNP40-205ENST00000486941 POTEIP0CG38 1075 aa13.38□□□□□ -0.27
SNRNP40-205ENST00000486941 ZRANB1Q9UGI0 708 aa13.36□□□□□ -0.27
SNRNP40-205ENST00000486941 FKBP8Q14318 412 aa13.34□□□□□ -0.27
SNRNP40-205ENST00000486941 ZNF579Q8NAF0 562 aaKnown RBP13.34□□□□□ -0.27
SNRNP40-205ENST00000486941 PHF12Q96QT6 1004 aa13.26□□□□□ -0.29
SNRNP40-205ENST00000486941 GALR2O43603 387 aaPredicted RBP13.24□□□□□ -0.29
SNRNP40-205ENST00000486941 NPM1P06748 294 aaKnown RBP eCLIP13.24□□□□□ -0.29
SNRNP40-205ENST00000486941 MIER1Q8N108 512 aa13.19□□□□□ -0.3
SNRNP40-205ENST00000486941 CLCN6P51797 869 aa13.17□□□□□ -0.3
SNRNP40-205ENST00000486941 TSPYL2Q9H2G4 693 aaPredicted RBP13.13□□□□□ -0.31
SNRNP40-205ENST00000486941 PAK3O75914 559 aaPredicted RBP13.12□□□□□ -0.31
SNRNP40-205ENST00000486941 RASEFQ8IZ41 740 aa13.12□□□□□ -0.31
SNRNP40-205ENST00000486941 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
SNRNP40-205ENST00000486941 LHX8Q68G74 356 aa13.08□□□□□ -0.32
SNRNP40-205ENST00000486941 DCBLD2Q96PD2 775 aa13.08□□□□□ -0.32
SNRNP40-205ENST00000486941 MS4A3Q96HJ5 214 aa13.07□□□□□ -0.32
SNRNP40-205ENST00000486941 PLCD3Q8N3E9 789 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 182.6 ms