RNA–Protein interactions for RNA: ENST00000486837.1

LMBR1-218, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 576 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-218ENST00000486837 AEBP2Q6ZN18 517 aaPredicted RBP23.5■■□□□ 1.35
LMBR1-218ENST00000486837 CHIC1Q5VXU3 224 aa23.29■■□□□ 1.32
LMBR1-218ENST00000486837 PHF23Q9BUL5 403 aaPredicted RBP20.48■□□□□ 0.87
LMBR1-218ENST00000486837 SENP3Q9H4L4 574 aaPredicted RBP19.96■□□□□ 0.79
LMBR1-218ENST00000486837 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
LMBR1-218ENST00000486837 FOXD1Q16676 465 aa18.44■□□□□ 0.54
LMBR1-218ENST00000486837 PPP6R1Q9UPN7 881 aa17.95■□□□□ 0.46
LMBR1-218ENST00000486837 ADRA2BP18089 450 aa17.94■□□□□ 0.46
LMBR1-218ENST00000486837 PIAS4Q8N2W9 510 aaPredicted RBP17.47■□□□□ 0.39
LMBR1-218ENST00000486837 MSH5O43196 834 aa16.95■□□□□ 0.3
LMBR1-218ENST00000486837 PPP4R3CPQ6ZMV5 832 aa16.81■□□□□ 0.28
LMBR1-218ENST00000486837 KCNA4P22459 653 aa16.72■□□□□ 0.27
LMBR1-218ENST00000486837 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
LMBR1-218ENST00000486837 NCBP3Q53F19 620 aaKnown RBP16.49■□□□□ 0.23
LMBR1-218ENST00000486837 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
LMBR1-218ENST00000486837 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
LMBR1-218ENST00000486837 MAPK8IP2Q13387 824 aaPredicted RBP16.18■□□□□ 0.18
LMBR1-218ENST00000486837 SLC4A1APQ9BWU0 796 aaKnown RBP16■□□□□ 0.15
LMBR1-218ENST00000486837 DMRT2Q9Y5R5 561 aa15.97■□□□□ 0.15
LMBR1-218ENST00000486837 RNF216Q9NWF9 866 aaPredicted RBP15.92■□□□□ 0.14
LMBR1-218ENST00000486837 POTEDQ86YR6 584 aa15.9■□□□□ 0.14
LMBR1-218ENST00000486837 EHMT2Q96KQ7 1210 aa15.83■□□□□ 0.12
LMBR1-218ENST00000486837 DNAJC5BQ9UF47 199 aa15.8■□□□□ 0.12
LMBR1-218ENST00000486837 HOXD11P31277 338 aaPredicted RBP15.77■□□□□ 0.12
LMBR1-218ENST00000486837 CSRNP3Q8WYN3 585 aa15.56■□□□□ 0.08
LMBR1-218ENST00000486837 ZBTB22O15209 634 aa15.37■□□□□ 0.05
LMBR1-218ENST00000486837 FOXD4L1Q9NU39 408 aa15.36■□□□□ 0.05
LMBR1-218ENST00000486837 SLC4A2P04920 1241 aa15.22■□□□□ 0.03
LMBR1-218ENST00000486837 DCAF8L1A6NGE4 600 aa15.19■□□□□ 0.02
LMBR1-218ENST00000486837 MYCNP04198 464 aaPredicted RBP15□□□□□ -0.01
LMBR1-218ENST00000486837 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.99□□□□□ -0.01
LMBR1-218ENST00000486837 ATXN8OSP0DMR3 200 aa14.83□□□□□ -0.04
LMBR1-218ENST00000486837 U3KPZ7 1027 aaPredicted RBP14.79□□□□□ -0.04
LMBR1-218ENST00000486837 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.77□□□□□ -0.05
LMBR1-218ENST00000486837 HNRNPUL2Q1KMD3 747 aaKnown RBP14.77□□□□□ -0.05
LMBR1-218ENST00000486837 SAMD1Q6SPF0 538 aaPredicted RBP14.71□□□□□ -0.05
LMBR1-218ENST00000486837 APLP2Q06481 763 aa14.55□□□□□ -0.08
LMBR1-218ENST00000486837 RNF39Q9H2S5 420 aa14.52□□□□□ -0.09
LMBR1-218ENST00000486837 ATF5Q9Y2D1 282 aaPredicted RBP14.5□□□□□ -0.09
LMBR1-218ENST00000486837 C1QBPQ07021 282 aaKnown RBP14.4□□□□□ -0.1
LMBR1-218ENST00000486837 ZNF219Q9P2Y4 722 aaPredicted RBP14.29□□□□□ -0.12
LMBR1-218ENST00000486837 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
LMBR1-218ENST00000486837 CAPN15O75808 1086 aa14.2□□□□□ -0.14
LMBR1-218ENST00000486837 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
LMBR1-218ENST00000486837 POLA2Q14181 598 aa14.04□□□□□ -0.16
LMBR1-218ENST00000486837 FKBP8Q14318 412 aa14.04□□□□□ -0.16
LMBR1-218ENST00000486837 FBLN2P98095 1184 aa13.95□□□□□ -0.18
LMBR1-218ENST00000486837 ABCB7O75027 752 aa13.92□□□□□ -0.18
LMBR1-218ENST00000486837 DSG3P32926 999 aa13.91□□□□□ -0.18
LMBR1-218ENST00000486837 MKRN4PQ13434 485 aaPredicted RBP13.91□□□□□ -0.18
LMBR1-218ENST00000486837 ZBTB12Q9Y330 459 aaPredicted RBP13.91□□□□□ -0.18
LMBR1-218ENST00000486837 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
LMBR1-218ENST00000486837 SPDYE4A6NLX3 237 aa13.77□□□□□ -0.21
LMBR1-218ENST00000486837 PROM2Q8N271 834 aa13.62□□□□□ -0.23
LMBR1-218ENST00000486837 OSCARQ8IYS5 282 aa13.55□□□□□ -0.24
LMBR1-218ENST00000486837 SPDYE2BA6NHP3 402 aa13.54□□□□□ -0.24
LMBR1-218ENST00000486837 SPDYE6P0CI01 402 aa13.54□□□□□ -0.24
LMBR1-218ENST00000486837 SPDYE2Q495Y8 402 aa13.54□□□□□ -0.24
LMBR1-218ENST00000486837 FBXO3Q9UK99 471 aa13.53□□□□□ -0.24
LMBR1-218ENST00000486837 ZNF692Q9BU19 519 aaPredicted RBP13.49□□□□□ -0.25
LMBR1-218ENST00000486837 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
LMBR1-218ENST00000486837 AMER1Q5JTC6 1135 aaPredicted RBP13.37□□□□□ -0.27
LMBR1-218ENST00000486837 PABPN1Q86U42 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
LMBR1-218ENST00000486837 RBM42Q9BTD8 480 aaKnown RBP13.3□□□□□ -0.28
LMBR1-218ENST00000486837 VASPP50552 380 aaPredicted RBP13.29□□□□□ -0.28
LMBR1-218ENST00000486837 RTN4Q9NQC3 1192 aaKnown RBP13.27□□□□□ -0.29
LMBR1-218ENST00000486837 STAG3Q9UJ98 1225 aa13.25□□□□□ -0.29
LMBR1-218ENST00000486837 AKT1S1Q96B36 256 aa13.19□□□□□ -0.3
LMBR1-218ENST00000486837 IFNLR1Q8IU57 520 aaPredicted RBP13.11□□□□□ -0.31
LMBR1-218ENST00000486837 SPDYE1Q8NFV5 336 aaPredicted RBP13.06□□□□□ -0.32
LMBR1-218ENST00000486837 PLCD3Q8N3E9 789 aa13.03□□□□□ -0.32
LMBR1-218ENST00000486837 REM2Q8IYK8 340 aaPredicted RBP13.02□□□□□ -0.33
LMBR1-218ENST00000486837 MIER1Q8N108 512 aa13□□□□□ -0.33
LMBR1-218ENST00000486837 PLEKHG5O94827 1062 aa12.98□□□□□ -0.33
LMBR1-218ENST00000486837 KLHL34Q8N239 644 aa12.98□□□□□ -0.33
LMBR1-218ENST00000486837 SPOCK2Q92563 424 aa12.95□□□□□ -0.34
LMBR1-218ENST00000486837 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
LMBR1-218ENST00000486837 CLEC11AQ9Y240 323 aa12.93□□□□□ -0.34
LMBR1-218ENST00000486837 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
LMBR1-218ENST00000486837 PITPNM1O00562 1244 aa12.86□□□□□ -0.35
LMBR1-218ENST00000486837 PKD2Q13563 968 aa12.79□□□□□ -0.36
LMBR1-218ENST00000486837 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
LMBR1-218ENST00000486837 MNX1P50219 401 aaPredicted RBP12.69□□□□□ -0.38
LMBR1-218ENST00000486837 ECM2O94769 699 aaPredicted RBP12.67□□□□□ -0.38
LMBR1-218ENST00000486837 NUBP1P53384 320 aa12.66□□□□□ -0.38
LMBR1-218ENST00000486837 CIZ1Q9ULV3 898 aaPredicted RBP12.66□□□□□ -0.38
LMBR1-218ENST00000486837 GSE1Q14687 1217 aa12.64□□□□□ -0.39
LMBR1-218ENST00000486837 TRIM41Q8WV44 630 aa12.64□□□□□ -0.39
LMBR1-218ENST00000486837 NPM1P06748 294 aaKnown RBP eCLIP12.63□□□□□ -0.39
LMBR1-218ENST00000486837 FXR2P51116 673 aaKnown RBP eCLIP12.59□□□□□ -0.39
LMBR1-218ENST00000486837 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
LMBR1-218ENST00000486837 FAM212AQ96EL1 285 aa12.57□□□□□ -0.4
LMBR1-218ENST00000486837 DCAF8L2P0C7V8 631 aa12.56□□□□□ -0.4
LMBR1-218ENST00000486837 DCAF8Q5TAQ9 597 aa12.56□□□□□ -0.4
LMBR1-218ENST00000486837 CHADLQ6NUI6 762 aa12.56□□□□□ -0.4
LMBR1-218ENST00000486837 PRKAR2AP13861 404 aaKnown RBP12.54□□□□□ -0.4
LMBR1-218ENST00000486837 FARP1Q9Y4F1 1045 aaPredicted RBP12.53□□□□□ -0.4
LMBR1-218ENST00000486837 RGL2O15211 777 aa12.52□□□□□ -0.41
LMBR1-218ENST00000486837 RASEFQ8IZ41 740 aa12.52□□□□□ -0.41
LMBR1-218ENST00000486837 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms