RNA–Protein interactions for RNA: ENST00000484252.5

LIMS2-215, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,099 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-215ENST00000484252 NISCHQ9Y2I1 1504 aa40.99■■■■■ 4.15
LIMS2-215ENST00000484252 CCDC180Q9P1Z9 1646 aa35.01■■■■□ 3.19
LIMS2-215ENST00000484252 ZCCHC6Q5VYS8 1495 aaKnown RBP34.7■■■■□ 3.15
LIMS2-215ENST00000484252 SHROOM4Q9ULL8 1493 aa34.57■■■■□ 3.12
LIMS2-215ENST00000484252 SUPT5HO00267 1087 aaKnown RBP33.94■■■■□ 3.02
LIMS2-215ENST00000484252 DCAF1Q9Y4B6 1507 aa33.82■■■■□ 3.01
LIMS2-215ENST00000484252 DCAF8L2P0C7V8 631 aa33.59■■■□□ 2.97
LIMS2-215ENST00000484252 CHIC1Q5VXU3 224 aa33.16■■■□□ 2.9
LIMS2-215ENST00000484252 MYO15BQ96JP2 1530 aa32.96■■■□□ 2.87
LIMS2-215ENST00000484252 ABCC9O60706 1549 aa32.75■■■□□ 2.83
LIMS2-215ENST00000484252 SCRIBQ14160 1630 aa32.53■■■□□ 2.8
LIMS2-215ENST00000484252 RSF1Q96T23 1441 aaPredicted RBP32.37■■■□□ 2.77
LIMS2-215ENST00000484252 NACADO15069 1562 aa32.32■■■□□ 2.76
LIMS2-215ENST00000484252 HRCP23327 699 aa32.19■■■□□ 2.74
LIMS2-215ENST00000484252 RB1CC1Q8TDY2 1594 aa32.12■■■□□ 2.73
LIMS2-215ENST00000484252 PCGF6Q9BYE7 350 aa32.01■■■□□ 2.72
LIMS2-215ENST00000484252 LOC105371045A0A1W2PR82 267 aa32.01■■■□□ 2.71
LIMS2-215ENST00000484252 CECR2Q9BXF3 1484 aa31.8■■■□□ 2.68
LIMS2-215ENST00000484252 TRIM41Q8WV44 630 aa31.77■■■□□ 2.68
LIMS2-215ENST00000484252 MROH2BQ7Z745 1585 aa31.76■■■□□ 2.67
LIMS2-215ENST00000484252 TRIM26Q12899 539 aaPredicted RBP31.61■■■□□ 2.65
LIMS2-215ENST00000484252 WIZO95785 1651 aa31.58■■■□□ 2.65
LIMS2-215ENST00000484252 BAZ1AQ9NRL2 1556 aaPredicted RBP31.54■■■□□ 2.64
LIMS2-215ENST00000484252 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.6
LIMS2-215ENST00000484252 FAM9AQ8IZU1 332 aaPredicted RBP31.29■■■□□ 2.6
LIMS2-215ENST00000484252 EIF4G1Q04637 1599 aaKnown RBP31.29■■■□□ 2.6
LIMS2-215ENST00000484252 PPARGC1BQ86YN6 1023 aaKnown RBP31.25■■■□□ 2.59
LIMS2-215ENST00000484252 TOP2AP11388 1531 aaKnown RBP31.23■■■□□ 2.59
LIMS2-215ENST00000484252 SMARCA4P51532 1647 aa31.21■■■□□ 2.59
LIMS2-215ENST00000484252 ZEB1P37275 1124 aaPredicted RBP31.07■■■□□ 2.56
LIMS2-215ENST00000484252 SMARCA2P51531 1590 aa31■■■□□ 2.55
LIMS2-215ENST00000484252 CCDC88BA6NC98 1476 aa30.99■■■□□ 2.55
LIMS2-215ENST00000484252 BICRAQ9NZM4 1560 aa30.93■■■□□ 2.54
LIMS2-215ENST00000484252 EHMT2Q96KQ7 1210 aa30.86■■■□□ 2.53
LIMS2-215ENST00000484252 ABCC8Q09428 1581 aa30.81■■■□□ 2.52
LIMS2-215ENST00000484252 PABPN1Q86U42 306 aaKnown RBP eCLIP30.75■■■□□ 2.51
LIMS2-215ENST00000484252 PEG3Q9GZU2 1588 aa30.73■■■□□ 2.51
LIMS2-215ENST00000484252 EEA1Q15075 1411 aa30.68■■■□□ 2.5
LIMS2-215ENST00000484252 WRNQ14191 1432 aaPredicted RBP eCLIP30.6■■■□□ 2.49
LIMS2-215ENST00000484252 SOGA1O94964 1423 aa30.53■■■□□ 2.48
LIMS2-215ENST00000484252 TNIKQ9UKE5 1360 aa30.53■■■□□ 2.48
LIMS2-215ENST00000484252 CEP162Q5TB80 1403 aa30.49■■■□□ 2.47
LIMS2-215ENST00000484252 PELP1Q8IZL8 1130 aaKnown RBP30.46■■■□□ 2.47
LIMS2-215ENST00000484252 CSRNP3Q8WYN3 585 aa30.45■■■□□ 2.46
LIMS2-215ENST00000484252 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
LIMS2-215ENST00000484252 GOLGA3Q08378 1498 aa30.35■■■□□ 2.45
LIMS2-215ENST00000484252 RUSC2Q8N2Y8 1516 aa30.34■■■□□ 2.45
LIMS2-215ENST00000484252 BAZ1BQ9UIG0 1483 aaKnown RBP30.3■■■□□ 2.44
LIMS2-215ENST00000484252 SYNJ1O43426 1573 aa30.24■■■□□ 2.43
LIMS2-215ENST00000484252 UBTFP17480 764 aaKnown RBP30.22■■■□□ 2.43
LIMS2-215ENST00000484252 KIF21BO75037 1637 aa30.2■■■□□ 2.43
LIMS2-215ENST00000484252 CEP164Q9UPV0 1460 aa30.2■■■□□ 2.42
LIMS2-215ENST00000484252 CCER1Q8TC90 406 aaPredicted RBP30.17■■■□□ 2.42
LIMS2-215ENST00000484252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.14■■■□□ 2.42
LIMS2-215ENST00000484252 TOP2BQ02880 1626 aa29.97■■■□□ 2.39
LIMS2-215ENST00000484252 CLIP1P30622 1438 aa29.93■■■□□ 2.38
LIMS2-215ENST00000484252 TTBK1Q5TCY1 1321 aaPredicted RBP29.92■■■□□ 2.38
LIMS2-215ENST00000484252 HMGXB3Q12766 1538 aa29.9■■■□□ 2.38
LIMS2-215ENST00000484252 BIVM-ERCC5R4GMW8 1640 aa29.9■■■□□ 2.38
LIMS2-215ENST00000484252 NCAPD3P42695 1498 aa29.86■■■□□ 2.37
LIMS2-215ENST00000484252 VPS8Q8N3P4 1428 aa29.85■■■□□ 2.37
LIMS2-215ENST00000484252 RAPGEF2Q9Y4G8 1499 aa29.83■■■□□ 2.37
LIMS2-215ENST00000484252 ERICH3Q5RHP9 1530 aa29.74■■■□□ 2.35
LIMS2-215ENST00000484252 PRXQ9BXM0 1461 aa29.66■■■□□ 2.34
LIMS2-215ENST00000484252 APLP2Q06481 763 aa29.65■■■□□ 2.34
LIMS2-215ENST00000484252 CUX1P39880 1505 aa29.6■■■□□ 2.33
LIMS2-215ENST00000484252 DIEXFQ68CQ4 756 aaKnown RBP29.59■■■□□ 2.33
LIMS2-215ENST00000484252 CFTRP13569 1480 aa29.59■■■□□ 2.33
LIMS2-215ENST00000484252 KIF27Q86VH2 1401 aa29.53■■■□□ 2.32
LIMS2-215ENST00000484252 SCAF1Q9H7N4 1312 aaKnown RBP29.53■■■□□ 2.32
LIMS2-215ENST00000484252 HNRNPUL2Q1KMD3 747 aaKnown RBP29.48■■■□□ 2.31
LIMS2-215ENST00000484252 ARAP1Q96P48 1450 aa29.45■■■□□ 2.31
LIMS2-215ENST00000484252 ZNF316A6NFI3 1004 aaPredicted RBP29.45■■■□□ 2.31
LIMS2-215ENST00000484252 PRDM2Q13029 1718 aa29.45■■■□□ 2.3
LIMS2-215ENST00000484252 MYT1Q01538 1121 aa29.39■■■□□ 2.3
LIMS2-215ENST00000484252 RANGAP1P46060 587 aaPredicted RBP29.38■■■□□ 2.29
LIMS2-215ENST00000484252 ACIN1Q9UKV3 1341 aaKnown RBP29.38■■■□□ 2.29
LIMS2-215ENST00000484252 CENPBP07199 599 aaPredicted RBP29.31■■■□□ 2.28
LIMS2-215ENST00000484252 CLSPNQ9HAW4 1339 aa29.24■■■□□ 2.27
LIMS2-215ENST00000484252 NEUROD1Q13562 356 aa29.23■■■□□ 2.27
LIMS2-215ENST00000484252 CADPSQ9ULU8 1353 aa29.22■■■□□ 2.27
LIMS2-215ENST00000484252 CC2D2AQ9P2K1 1620 aa29.21■■■□□ 2.27
LIMS2-215ENST00000484252 ARHGAP35Q9NRY4 1499 aa29.2■■■□□ 2.26
LIMS2-215ENST00000484252 RRBP1Q9P2E9 1410 aaKnown RBP29.19■■■□□ 2.26
LIMS2-215ENST00000484252 CUX2O14529 1486 aa29.16■■■□□ 2.26
LIMS2-215ENST00000484252 KANK4Q5T7N3 995 aaPredicted RBP29.15■■■□□ 2.26
LIMS2-215ENST00000484252 IGF1RP08069 1367 aa29.14■■■□□ 2.26
LIMS2-215ENST00000484252 DHX57Q6P158 1386 aaKnown RBP29.08■■■□□ 2.25
LIMS2-215ENST00000484252 FGD5Q6ZNL6 1462 aa29.06■■■□□ 2.24
LIMS2-215ENST00000484252 MAP3K1Q13233 1512 aa29.06■■■□□ 2.24
LIMS2-215ENST00000484252 CARMIL1Q5VZK9 1371 aa29.02■■■□□ 2.24
LIMS2-215ENST00000484252 CCNB3Q8WWL7 1395 aa29.01■■■□□ 2.23
LIMS2-215ENST00000484252 GTF3C3Q9Y5Q9 886 aa28.94■■■□□ 2.22
LIMS2-215ENST00000484252 TIAM1Q13009 1591 aa28.94■■■□□ 2.22
LIMS2-215ENST00000484252 FANCD2Q9BXW9 1451 aa28.92■■■□□ 2.22
LIMS2-215ENST00000484252 MIER1Q8N108 512 aa28.9■■■□□ 2.22
LIMS2-215ENST00000484252 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
LIMS2-215ENST00000484252 FHAD1B1AJZ9 1412 aa28.86■■■□□ 2.21
LIMS2-215ENST00000484252 ABCA10Q8WWZ4 1543 aa28.81■■■□□ 2.2
LIMS2-215ENST00000484252 LRRC9Q6ZRR7 1453 aa28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms