RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
PTCD3-214ENST00000483925 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.05
PTCD3-214ENST00000483925 SENP3Q9H4L4 574 aaPredicted RBP19.37■□□□□ 0.69
PTCD3-214ENST00000483925 PHF23Q9BUL5 403 aaPredicted RBP19.11■□□□□ 0.65
PTCD3-214ENST00000483925 FOXD1Q16676 465 aa18.02■□□□□ 0.48
PTCD3-214ENST00000483925 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
PTCD3-214ENST00000483925 MSH5O43196 834 aa16.87■□□□□ 0.29
PTCD3-214ENST00000483925 PPP6R1Q9UPN7 881 aa16.87■□□□□ 0.29
PTCD3-214ENST00000483925 PIAS4Q8N2W9 510 aaPredicted RBP16.86■□□□□ 0.29
PTCD3-214ENST00000483925 ADRA2BP18089 450 aa16.83■□□□□ 0.28
PTCD3-214ENST00000483925 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
PTCD3-214ENST00000483925 SCAF1Q9H7N4 1312 aaKnown RBP15.46■□□□□ 0.07
PTCD3-214ENST00000483925 MAPK8IP2Q13387 824 aaPredicted RBP15.44■□□□□ 0.06
PTCD3-214ENST00000483925 DMRT2Q9Y5R5 561 aa15.35■□□□□ 0.05
PTCD3-214ENST00000483925 PPP4R3CPQ6ZMV5 832 aa15.15■□□□□ 0.02
PTCD3-214ENST00000483925 CNKSR2Q8WXI2 1034 aa14.87□□□□□ -0.03
PTCD3-214ENST00000483925 HOXD11P31277 338 aaPredicted RBP14.8□□□□□ -0.04
PTCD3-214ENST00000483925 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
PTCD3-214ENST00000483925 RNF216Q9NWF9 866 aaPredicted RBP14.71□□□□□ -0.05
PTCD3-214ENST00000483925 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
PTCD3-214ENST00000483925 CACNB1Q02641 598 aaPredicted RBP14.45□□□□□ -0.1
PTCD3-214ENST00000483925 RNF39Q9H2S5 420 aa14.38□□□□□ -0.11
PTCD3-214ENST00000483925 NPM3O75607 178 aaKnown RBP14.36□□□□□ -0.11
PTCD3-214ENST00000483925 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
PTCD3-214ENST00000483925 C1QBPQ07021 282 aaKnown RBP14.2□□□□□ -0.14
PTCD3-214ENST00000483925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.13□□□□□ -0.159e-7■□□□□ 10.7
PTCD3-214ENST00000483925 KCNA4P22459 653 aa14.12□□□□□ -0.15
PTCD3-214ENST00000483925 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
PTCD3-214ENST00000483925 SLC4A2P04920 1241 aa13.69□□□□□ -0.22
PTCD3-214ENST00000483925 CAPN15O75808 1086 aa13.59□□□□□ -0.23
PTCD3-214ENST00000483925 SPINK5Q9NQ38 1064 aaPredicted RBP13.59□□□□□ -0.23
PTCD3-214ENST00000483925 DSG3P32926 999 aa13.49□□□□□ -0.25
PTCD3-214ENST00000483925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
PTCD3-214ENST00000483925 APLP2Q06481 763 aa13.48□□□□□ -0.25
PTCD3-214ENST00000483925 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
PTCD3-214ENST00000483925 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
PTCD3-214ENST00000483925 TRHP20396 242 aaPredicted RBP13.38□□□□□ -0.27
PTCD3-214ENST00000483925 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-214ENST00000483925 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
PTCD3-214ENST00000483925 MYCNP04198 464 aaPredicted RBP13.29□□□□□ -0.28
PTCD3-214ENST00000483925 ABCB7O75027 752 aa13.26□□□□□ -0.29
PTCD3-214ENST00000483925 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
PTCD3-214ENST00000483925 POLA2Q14181 598 aa13.03□□□□□ -0.32
PTCD3-214ENST00000483925 ZBTB22O15209 634 aa12.95□□□□□ -0.34
PTCD3-214ENST00000483925 ATF5Q9Y2D1 282 aaPredicted RBP12.95□□□□□ -0.34
PTCD3-214ENST00000483925 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
PTCD3-214ENST00000483925 POTEHQ6S545 545 aa12.84□□□□□ -0.35
PTCD3-214ENST00000483925 ATXN8OSP0DMR3 200 aa12.79□□□□□ -0.36
PTCD3-214ENST00000483925 ZBTB12Q9Y330 459 aaPredicted RBP12.79□□□□□ -0.36
PTCD3-214ENST00000483925 AKT1S1Q96B36 256 aa12.6□□□□□ -0.39
PTCD3-214ENST00000483925 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
PTCD3-214ENST00000483925 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
PTCD3-214ENST00000483925 FBLN2P98095 1184 aa12.5□□□□□ -0.41
PTCD3-214ENST00000483925 REM2Q8IYK8 340 aaPredicted RBP12.47□□□□□ -0.41
PTCD3-214ENST00000483925 CSRNP3Q8WYN3 585 aa12.42□□□□□ -0.42
PTCD3-214ENST00000483925 SPDYE2BA6NHP3 402 aa12.39□□□□□ -0.43
PTCD3-214ENST00000483925 SPDYE6P0CI01 402 aa12.39□□□□□ -0.43
PTCD3-214ENST00000483925 SPDYE2Q495Y8 402 aa12.39□□□□□ -0.43
PTCD3-214ENST00000483925 MKRN4PQ13434 485 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-214ENST00000483925 PITPNM1O00562 1244 aa12.32□□□□□ -0.44
PTCD3-214ENST00000483925 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
PTCD3-214ENST00000483925 PIP4P2Q8N4L2 257 aa12.27□□□□□ -0.45
PTCD3-214ENST00000483925 ZNF692Q9BU19 519 aaPredicted RBP12.26□□□□□ -0.45
PTCD3-214ENST00000483925 FXR2P51116 673 aaKnown RBP eCLIP12.22□□□□□ -0.45
PTCD3-214ENST00000483925 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
PTCD3-214ENST00000483925 SPDYE1Q8NFV5 336 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-214ENST00000483925 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
PTCD3-214ENST00000483925 HAX1O00165 279 aa12.07□□□□□ -0.48
PTCD3-214ENST00000483925 PABPN1Q86U42 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
PTCD3-214ENST00000483925 SP7Q8TDD2 431 aaPredicted RBP12.06□□□□□ -0.48
PTCD3-214ENST00000483925 PRKAR2AP13861 404 aaKnown RBP12.02□□□□□ -0.49
PTCD3-214ENST00000483925 PRR29P0C7W0 189 aa11.96□□□□□ -0.49
PTCD3-214ENST00000483925 EVX2Q03828 476 aa11.88□□□□□ -0.51
PTCD3-214ENST00000483925 CHADLQ6NUI6 762 aa11.88□□□□□ -0.51
PTCD3-214ENST00000483925 SPDYE4A6NLX3 237 aa11.83□□□□□ -0.52
PTCD3-214ENST00000483925 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
PTCD3-214ENST00000483925 STAG3Q9UJ98 1225 aa11.78□□□□□ -0.52
PTCD3-214ENST00000483925 FARP1Q9Y4F1 1045 aaPredicted RBP11.73□□□□□ -0.53
PTCD3-214ENST00000483925 GABBR2O75899 941 aa11.64□□□□□ -0.55
PTCD3-214ENST00000483925 CD44P16070 742 aaKnown RBP11.64□□□□□ -0.55
PTCD3-214ENST00000483925 CREBZFQ9NS37 354 aa11.64□□□□□ -0.55
PTCD3-214ENST00000483925 PROM2Q8N271 834 aa11.53□□□□□ -0.56
PTCD3-214ENST00000483925 CLCN6P51797 869 aa11.52□□□□□ -0.57
PTCD3-214ENST00000483925 ZRANB1Q9UGI0 708 aa11.49□□□□□ -0.57
PTCD3-214ENST00000483925 NPM1P06748 294 aaKnown RBP eCLIP11.48□□□□□ -0.57
PTCD3-214ENST00000483925 ZNF579Q8NAF0 562 aaKnown RBP11.46□□□□□ -0.57
PTCD3-214ENST00000483925 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
PTCD3-214ENST00000483925 PAK3O75914 559 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-214ENST00000483925 POTEIP0CG38 1075 aa11.37□□□□□ -0.59
PTCD3-214ENST00000483925 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
PTCD3-214ENST00000483925 LHX8Q68G74 356 aa11.33□□□□□ -0.6
PTCD3-214ENST00000483925 PLEKHG5O94827 1062 aa11.31□□□□□ -0.6
PTCD3-214ENST00000483925 MIER1Q8N108 512 aa11.31□□□□□ -0.6
PTCD3-214ENST00000483925 PHF12Q96QT6 1004 aa11.31□□□□□ -0.6
PTCD3-214ENST00000483925 GALR2O43603 387 aaPredicted RBP11.3□□□□□ -0.6
PTCD3-214ENST00000483925 FKBP8Q14318 412 aa11.28□□□□□ -0.6
PTCD3-214ENST00000483925 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
PTCD3-214ENST00000483925 PLCD3Q8N3E9 789 aa11.22□□□□□ -0.61
PTCD3-214ENST00000483925 CCDC61Q9Y6R9 512 aa11.18□□□□□ -0.62
PTCD3-214ENST00000483925 MS4A3Q96HJ5 214 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms