RNA–Protein interactions for RNA: ENST00000483684.1

COMMD3-213, Transcript of COMM domain containing 3, humanhuman

TSL 5

Gene COMMD3, Length 722 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-213ENST00000483684 AEBP2Q6ZN18 517 aaPredicted RBP31.97■■■□□ 2.71
COMMD3-213ENST00000483684 CHIC1Q5VXU3 224 aa30.31■■■□□ 2.44
COMMD3-213ENST00000483684 SENP3Q9H4L4 574 aaPredicted RBP27.23■■□□□ 1.95
COMMD3-213ENST00000483684 PHF23Q9BUL5 403 aaPredicted RBP26.89■■□□□ 1.9
COMMD3-213ENST00000483684 FOXD1Q16676 465 aa25.41■■□□□ 1.66
COMMD3-213ENST00000483684 POTEDQ86YR6 584 aa24.42■■□□□ 1.5
COMMD3-213ENST00000483684 PLPPR3Q6T4P5 718 aa24.17■■□□□ 1.46
COMMD3-213ENST00000483684 MSH5O43196 834 aa23.78■■□□□ 1.4
COMMD3-213ENST00000483684 PPP6R1Q9UPN7 881 aa23.74■■□□□ 1.39
COMMD3-213ENST00000483684 PIAS4Q8N2W9 510 aaPredicted RBP23.69■■□□□ 1.38
COMMD3-213ENST00000483684 ADRA2BP18089 450 aa23.63■■□□□ 1.37
COMMD3-213ENST00000483684 MAPK8IP2Q13387 824 aaPredicted RBP21.73■■□□□ 1.07
COMMD3-213ENST00000483684 DMRT2Q9Y5R5 561 aa21.62■■□□□ 1.05
COMMD3-213ENST00000483684 SCAF1Q9H7N4 1312 aaKnown RBP21.59■■□□□ 1.05
COMMD3-213ENST00000483684 PPP4R3CPQ6ZMV5 832 aa21.19■□□□□ 0.98
COMMD3-213ENST00000483684 HOXD11P31277 338 aaPredicted RBP20.83■□□□□ 0.93
COMMD3-213ENST00000483684 CNKSR2Q8WXI2 1034 aa20.81■□□□□ 0.92
COMMD3-213ENST00000483684 CACNB1Q02641 598 aaPredicted RBP20.79■□□□□ 0.92
COMMD3-213ENST00000483684 RNF216Q9NWF9 866 aaPredicted RBP20.64■□□□□ 0.89
COMMD3-213ENST00000483684 DCAF8L1A6NGE4 600 aa20.61■□□□□ 0.89
COMMD3-213ENST00000483684 NCBP3Q53F19 620 aaKnown RBP20.32■□□□□ 0.84
COMMD3-213ENST00000483684 RNF39Q9H2S5 420 aa20.31■□□□□ 0.84
COMMD3-213ENST00000483684 DNAJC5BQ9UF47 199 aa20.15■□□□□ 0.82
COMMD3-213ENST00000483684 NPM3O75607 178 aaKnown RBP20.08■□□□□ 0.81
COMMD3-213ENST00000483684 C1QBPQ07021 282 aaKnown RBP20■□□□□ 0.79
COMMD3-213ENST00000483684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.75■□□□□ 0.75
COMMD3-213ENST00000483684 KCNA4P22459 653 aa19.64■□□□□ 0.73
COMMD3-213ENST00000483684 U3KPZ7 1027 aaPredicted RBP19.4■□□□□ 0.7
COMMD3-213ENST00000483684 SLC4A2P04920 1241 aa19.21■□□□□ 0.67
COMMD3-213ENST00000483684 SPINK5Q9NQ38 1064 aaPredicted RBP19.11■□□□□ 0.65
COMMD3-213ENST00000483684 CAPN15O75808 1086 aa19.03■□□□□ 0.64
COMMD3-213ENST00000483684 DSG3P32926 999 aa19■□□□□ 0.63
COMMD3-213ENST00000483684 POTEHQ6S545 545 aa18.96■□□□□ 0.63
COMMD3-213ENST00000483684 APLP2Q06481 763 aa18.79■□□□□ 0.6
COMMD3-213ENST00000483684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.78■□□□□ 0.6
COMMD3-213ENST00000483684 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
COMMD3-213ENST00000483684 TRHP20396 242 aaPredicted RBP18.71■□□□□ 0.59
COMMD3-213ENST00000483684 ZNF219Q9P2Y4 722 aaPredicted RBP18.71■□□□□ 0.59
COMMD3-213ENST00000483684 SAMD1Q6SPF0 538 aaPredicted RBP18.68■□□□□ 0.58
COMMD3-213ENST00000483684 ABCB7O75027 752 aa18.59■□□□□ 0.57
COMMD3-213ENST00000483684 MYCNP04198 464 aaPredicted RBP18.56■□□□□ 0.56
COMMD3-213ENST00000483684 SLC4A1APQ9BWU0 796 aaKnown RBP18.5■□□□□ 0.55
COMMD3-213ENST00000483684 FOXD4L1Q9NU39 408 aa18.34■□□□□ 0.53
COMMD3-213ENST00000483684 POLA2Q14181 598 aa18.23■□□□□ 0.51
COMMD3-213ENST00000483684 ATF5Q9Y2D1 282 aaPredicted RBP18.16■□□□□ 0.5
COMMD3-213ENST00000483684 RBM42Q9BTD8 480 aaKnown RBP18.09■□□□□ 0.49
COMMD3-213ENST00000483684 ZBTB22O15209 634 aa18.08■□□□□ 0.48
COMMD3-213ENST00000483684 ZBTB12Q9Y330 459 aaPredicted RBP17.85■□□□□ 0.45
COMMD3-213ENST00000483684 ATXN8OSP0DMR3 200 aa17.81■□□□□ 0.44
COMMD3-213ENST00000483684 CHRDL2Q6WN34 429 aa17.71■□□□□ 0.43
COMMD3-213ENST00000483684 AKT1S1Q96B36 256 aa17.69■□□□□ 0.42
COMMD3-213ENST00000483684 OSCARQ8IYS5 282 aa17.65■□□□□ 0.42
COMMD3-213ENST00000483684 REM2Q8IYK8 340 aaPredicted RBP17.52■□□□□ 0.4
COMMD3-213ENST00000483684 SP7Q8TDD2 431 aaPredicted RBP17.43■□□□□ 0.38
COMMD3-213ENST00000483684 FBLN2P98095 1184 aa17.38■□□□□ 0.37
COMMD3-213ENST00000483684 PITPNM1O00562 1244 aa17.33■□□□□ 0.36
COMMD3-213ENST00000483684 MKRN4PQ13434 485 aaPredicted RBP17.33■□□□□ 0.36
COMMD3-213ENST00000483684 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
COMMD3-213ENST00000483684 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
COMMD3-213ENST00000483684 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
COMMD3-213ENST00000483684 PIP4P2Q8N4L2 257 aa17.31■□□□□ 0.36
COMMD3-213ENST00000483684 FXR2P51116 673 aaKnown RBP eCLIP17.23■□□□□ 0.35
COMMD3-213ENST00000483684 CSRNP3Q8WYN3 585 aa17.21■□□□□ 0.35
COMMD3-213ENST00000483684 SSUH2Q9Y2M2 353 aa17.12■□□□□ 0.33
COMMD3-213ENST00000483684 ZNF692Q9BU19 519 aaPredicted RBP17.08■□□□□ 0.32
COMMD3-213ENST00000483684 HAX1O00165 279 aa17.02■□□□□ 0.32
COMMD3-213ENST00000483684 SPDYE1Q8NFV5 336 aaPredicted RBP17.01■□□□□ 0.31
COMMD3-213ENST00000483684 CLEC11AQ9Y240 323 aa16.95■□□□□ 0.3
COMMD3-213ENST00000483684 EVX2Q03828 476 aa16.89■□□□□ 0.29
COMMD3-213ENST00000483684 EHMT2Q96KQ7 1210 aa16.87■□□□□ 0.29
COMMD3-213ENST00000483684 PRKAR2AP13861 404 aaKnown RBP16.86■□□□□ 0.29
COMMD3-213ENST00000483684 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
COMMD3-213ENST00000483684 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
COMMD3-213ENST00000483684 C19orf67A6NJJ6 358 aa16.67■□□□□ 0.26
COMMD3-213ENST00000483684 CHADLQ6NUI6 762 aa16.67■□□□□ 0.26
COMMD3-213ENST00000483684 SPDYE4A6NLX3 237 aa16.43■□□□□ 0.22
COMMD3-213ENST00000483684 FARP1Q9Y4F1 1045 aaPredicted RBP16.43■□□□□ 0.22
COMMD3-213ENST00000483684 GABBR2O75899 941 aa16.41■□□□□ 0.22
COMMD3-213ENST00000483684 STAG3Q9UJ98 1225 aa16.37■□□□□ 0.21
COMMD3-213ENST00000483684 LHX8Q68G74 356 aa16.34■□□□□ 0.21
COMMD3-213ENST00000483684 CD44P16070 742 aaKnown RBP16.32■□□□□ 0.2
COMMD3-213ENST00000483684 CREBZFQ9NS37 354 aa16.32■□□□□ 0.2
COMMD3-213ENST00000483684 CLCN6P51797 869 aa16.16■□□□□ 0.18
COMMD3-213ENST00000483684 PROM2Q8N271 834 aa16.12■□□□□ 0.17
COMMD3-213ENST00000483684 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
COMMD3-213ENST00000483684 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
COMMD3-213ENST00000483684 ZRANB1Q9UGI0 708 aa16.08■□□□□ 0.16
COMMD3-213ENST00000483684 MNX1P50219 401 aaPredicted RBP16.06■□□□□ 0.16
COMMD3-213ENST00000483684 NPM1P06748 294 aaKnown RBP eCLIP15.96■□□□□ 0.15
COMMD3-213ENST00000483684 PLSCR2Q9NRY7 297 aa15.92■□□□□ 0.14
COMMD3-213ENST00000483684 DCBLD2Q96PD2 775 aa15.91■□□□□ 0.14
COMMD3-213ENST00000483684 GALR2O43603 387 aaPredicted RBP15.9■□□□□ 0.14
COMMD3-213ENST00000483684 PAK3O75914 559 aaPredicted RBP15.9■□□□□ 0.14
COMMD3-213ENST00000483684 PHF12Q96QT6 1004 aa15.86■□□□□ 0.13
COMMD3-213ENST00000483684 MS4A3Q96HJ5 214 aa15.66■□□□□ 0.1
COMMD3-213ENST00000483684 CCDC61Q9Y6R9 512 aa15.66■□□□□ 0.1
COMMD3-213ENST00000483684 MIER1Q8N108 512 aa15.65■□□□□ 0.1
COMMD3-213ENST00000483684 TSPYL2Q9H2G4 693 aaPredicted RBP15.65■□□□□ 0.1
COMMD3-213ENST00000483684 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
COMMD3-213ENST00000483684 PLEKHG5O94827 1062 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms