RNA–Protein interactions for RNA: ENST00000483031.1

RPA3-207, Transcript of replication protein A3, humanhuman

TSL 2

Gene RPA3, Length 641 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3-207ENST00000483031 AEBP2Q6ZN18 517 aaPredicted RBP26.71■■□□□ 1.87
RPA3-207ENST00000483031 CHIC1Q5VXU3 224 aa25.31■■□□□ 1.64
RPA3-207ENST00000483031 SENP3Q9H4L4 574 aaPredicted RBP22.88■■□□□ 1.25
RPA3-207ENST00000483031 PHF23Q9BUL5 403 aaPredicted RBP22.53■■□□□ 1.2
RPA3-207ENST00000483031 FOXD1Q16676 465 aa21.29■■□□□ 1
RPA3-207ENST00000483031 PLPPR3Q6T4P5 718 aa20.2■□□□□ 0.82
RPA3-207ENST00000483031 MSH5O43196 834 aa20.02■□□□□ 0.8
RPA3-207ENST00000483031 PIAS4Q8N2W9 510 aaPredicted RBP19.91■□□□□ 0.78
RPA3-207ENST00000483031 PPP6R1Q9UPN7 881 aa19.8■□□□□ 0.76
RPA3-207ENST00000483031 ADRA2BP18089 450 aa19.75■□□□□ 0.75
RPA3-207ENST00000483031 POTEDQ86YR6 584 aa19.68■□□□□ 0.74
RPA3-207ENST00000483031 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
RPA3-207ENST00000483031 SCAF1Q9H7N4 1312 aaKnown RBP18.16■□□□□ 0.5
RPA3-207ENST00000483031 DMRT2Q9Y5R5 561 aa18.1■□□□□ 0.49
RPA3-207ENST00000483031 PPP4R3CPQ6ZMV5 832 aa17.67■□□□□ 0.42
RPA3-207ENST00000483031 DCAF8L1A6NGE4 600 aa17.4■□□□□ 0.38
RPA3-207ENST00000483031 HOXD11P31277 338 aaPredicted RBP17.39■□□□□ 0.37
RPA3-207ENST00000483031 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
RPA3-207ENST00000483031 RNF216Q9NWF9 866 aaPredicted RBP17.25■□□□□ 0.35
RPA3-207ENST00000483031 CACNB1Q02641 598 aaPredicted RBP17.24■□□□□ 0.35
RPA3-207ENST00000483031 RNF39Q9H2S5 420 aa17.04■□□□□ 0.32
RPA3-207ENST00000483031 NCBP3Q53F19 620 aaKnown RBP17.01■□□□□ 0.31
RPA3-207ENST00000483031 DNAJC5BQ9UF47 199 aa16.84■□□□□ 0.29
RPA3-207ENST00000483031 C1QBPQ07021 282 aaKnown RBP16.81■□□□□ 0.28
RPA3-207ENST00000483031 NPM3O75607 178 aaKnown RBP16.7■□□□□ 0.26
RPA3-207ENST00000483031 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.254e-11■■■■■ 40.3
RPA3-207ENST00000483031 KCNA4P22459 653 aa16.28■□□□□ 0.2
RPA3-207ENST00000483031 U3KPZ7 1027 aaPredicted RBP16.2■□□□□ 0.18
RPA3-207ENST00000483031 CAPN15O75808 1086 aa16.02■□□□□ 0.16
RPA3-207ENST00000483031 SPINK5Q9NQ38 1064 aaPredicted RBP15.99■□□□□ 0.15
RPA3-207ENST00000483031 SLC4A2P04920 1241 aa15.96■□□□□ 0.15
RPA3-207ENST00000483031 DSG3P32926 999 aa15.91■□□□□ 0.14
RPA3-207ENST00000483031 APLP2Q06481 763 aa15.84■□□□□ 0.13
RPA3-207ENST00000483031 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
RPA3-207ENST00000483031 HNRNPUL2Q1KMD3 747 aaKnown RBP15.78■□□□□ 0.12
RPA3-207ENST00000483031 TRHP20396 242 aaPredicted RBP15.73■□□□□ 0.11
RPA3-207ENST00000483031 ZNF219Q9P2Y4 722 aaPredicted RBP15.72■□□□□ 0.11
RPA3-207ENST00000483031 SAMD1Q6SPF0 538 aaPredicted RBP15.67■□□□□ 0.1
RPA3-207ENST00000483031 ABCB7O75027 752 aa15.62■□□□□ 0.09
RPA3-207ENST00000483031 MYCNP04198 464 aaPredicted RBP15.49■□□□□ 0.07
RPA3-207ENST00000483031 POTEHQ6S545 545 aa15.42■□□□□ 0.06
RPA3-207ENST00000483031 SLC4A1APQ9BWU0 796 aaKnown RBP15.39■□□□□ 0.05
RPA3-207ENST00000483031 POLA2Q14181 598 aa15.27■□□□□ 0.04
RPA3-207ENST00000483031 FOXD4L1Q9NU39 408 aa15.26■□□□□ 0.03
RPA3-207ENST00000483031 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
RPA3-207ENST00000483031 ATF5Q9Y2D1 282 aaPredicted RBP15.08■□□□□ 0
RPA3-207ENST00000483031 ZBTB12Q9Y330 459 aaPredicted RBP15.01□□□□□ -0.01
RPA3-207ENST00000483031 ZBTB22O15209 634 aa14.94□□□□□ -0.02
RPA3-207ENST00000483031 CHRDL2Q6WN34 429 aa14.93□□□□□ -0.02
RPA3-207ENST00000483031 AKT1S1Q96B36 256 aa14.85□□□□□ -0.03
RPA3-207ENST00000483031 ATXN8OSP0DMR3 200 aa14.82□□□□□ -0.04
RPA3-207ENST00000483031 OSCARQ8IYS5 282 aa14.78□□□□□ -0.04
RPA3-207ENST00000483031 REM2Q8IYK8 340 aaPredicted RBP14.69□□□□□ -0.06
RPA3-207ENST00000483031 FBLN2P98095 1184 aa14.59□□□□□ -0.07
RPA3-207ENST00000483031 PITPNM1O00562 1244 aa14.54□□□□□ -0.08
RPA3-207ENST00000483031 PIP4P2Q8N4L2 257 aa14.53□□□□□ -0.08
RPA3-207ENST00000483031 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
RPA3-207ENST00000483031 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
RPA3-207ENST00000483031 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
RPA3-207ENST00000483031 FXR2P51116 673 aaKnown RBP eCLIP14.43□□□□□ -0.1
RPA3-207ENST00000483031 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
RPA3-207ENST00000483031 MKRN4PQ13434 485 aaPredicted RBP14.38□□□□□ -0.11
RPA3-207ENST00000483031 HAX1O00165 279 aa14.33□□□□□ -0.12
RPA3-207ENST00000483031 ZNF692Q9BU19 519 aaPredicted RBP14.31□□□□□ -0.12
RPA3-207ENST00000483031 SPDYE1Q8NFV5 336 aaPredicted RBP14.28□□□□□ -0.12
RPA3-207ENST00000483031 SSUH2Q9Y2M2 353 aa14.27□□□□□ -0.13
RPA3-207ENST00000483031 CLEC11AQ9Y240 323 aa14.26□□□□□ -0.13
RPA3-207ENST00000483031 PRKAR2AP13861 404 aaKnown RBP14.17□□□□□ -0.14
RPA3-207ENST00000483031 CSRNP3Q8WYN3 585 aa14.16□□□□□ -0.14
RPA3-207ENST00000483031 PABPN1Q86U42 306 aaKnown RBP eCLIP14.09□□□□□ -0.15
RPA3-207ENST00000483031 EVX2Q03828 476 aa14.07□□□□□ -0.16
RPA3-207ENST00000483031 PRR29P0C7W0 189 aa14.02□□□□□ -0.17
RPA3-207ENST00000483031 C19orf67A6NJJ6 358 aa13.97□□□□□ -0.17
RPA3-207ENST00000483031 CHADLQ6NUI6 762 aa13.97□□□□□ -0.17
RPA3-207ENST00000483031 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
RPA3-207ENST00000483031 GABBR2O75899 941 aa13.79□□□□□ -0.2
RPA3-207ENST00000483031 FARP1Q9Y4F1 1045 aaPredicted RBP13.77□□□□□ -0.21
RPA3-207ENST00000483031 CD44P16070 742 aaKnown RBP13.72□□□□□ -0.21
RPA3-207ENST00000483031 STAG3Q9UJ98 1225 aa13.72□□□□□ -0.21
RPA3-207ENST00000483031 SPDYE4A6NLX3 237 aa13.7□□□□□ -0.22
RPA3-207ENST00000483031 CLCN6P51797 869 aa13.6□□□□□ -0.23
RPA3-207ENST00000483031 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
RPA3-207ENST00000483031 LHX8Q68G74 356 aa13.51□□□□□ -0.25
RPA3-207ENST00000483031 ZRANB1Q9UGI0 708 aa13.51□□□□□ -0.25
RPA3-207ENST00000483031 ZNF579Q8NAF0 562 aaKnown RBP13.5□□□□□ -0.25
RPA3-207ENST00000483031 POTEIP0CG38 1075 aa13.46□□□□□ -0.25
RPA3-207ENST00000483031 DCBLD2Q96PD2 775 aa13.44□□□□□ -0.26
RPA3-207ENST00000483031 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
RPA3-207ENST00000483031 NPM1P06748 294 aaKnown RBP eCLIP13.41□□□□□ -0.26
RPA3-207ENST00000483031 MNX1P50219 401 aaPredicted RBP13.34□□□□□ -0.27
RPA3-207ENST00000483031 GALR2O43603 387 aaPredicted RBP13.32□□□□□ -0.28
RPA3-207ENST00000483031 PROM2Q8N271 834 aa13.32□□□□□ -0.28
RPA3-207ENST00000483031 PHF12Q96QT6 1004 aa13.29□□□□□ -0.28
RPA3-207ENST00000483031 PLEKHG5O94827 1062 aa13.14□□□□□ -0.31
RPA3-207ENST00000483031 TSPYL2Q9H2G4 693 aaPredicted RBP13.13□□□□□ -0.31
RPA3-207ENST00000483031 MS4A3Q96HJ5 214 aa13.11□□□□□ -0.31
RPA3-207ENST00000483031 MIER1Q8N108 512 aa13.09□□□□□ -0.31
RPA3-207ENST00000483031 CCDC61Q9Y6R9 512 aa13.06□□□□□ -0.32
RPA3-207ENST00000483031 ASTLQ6HA08 431 aaPredicted RBP13.05□□□□□ -0.32
RPA3-207ENST00000483031 PELP1Q8IZL8 1130 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms