RNA–Protein interactions for RNA: ENST00000479555.1

CMSS1-204, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 4

Gene CMSS1, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-204ENST00000479555 AEBP2Q6ZN18 517 aaPredicted RBP26.38■■□□□ 1.81
CMSS1-204ENST00000479555 CHIC1Q5VXU3 224 aa24.97■■□□□ 1.59
CMSS1-204ENST00000479555 SENP3Q9H4L4 574 aaPredicted RBP22.33■■□□□ 1.17
CMSS1-204ENST00000479555 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
CMSS1-204ENST00000479555 FOXD1Q16676 465 aa20.92■□□□□ 0.94
CMSS1-204ENST00000479555 POTEDQ86YR6 584 aa20■□□□□ 0.79
CMSS1-204ENST00000479555 PLPPR3Q6T4P5 718 aa19.92■□□□□ 0.78
CMSS1-204ENST00000479555 PPP6R1Q9UPN7 881 aa19.65■□□□□ 0.74
CMSS1-204ENST00000479555 ADRA2BP18089 450 aa19.59■□□□□ 0.73
CMSS1-204ENST00000479555 PIAS4Q8N2W9 510 aaPredicted RBP19.54■□□□□ 0.72
CMSS1-204ENST00000479555 MSH5O43196 834 aa19.43■□□□□ 0.7
CMSS1-204ENST00000479555 MAPK8IP2Q13387 824 aaPredicted RBP18.01■□□□□ 0.47
CMSS1-204ENST00000479555 DMRT2Q9Y5R5 561 aa17.74■□□□□ 0.43
CMSS1-204ENST00000479555 SCAF1Q9H7N4 1312 aaKnown RBP17.7■□□□□ 0.42
CMSS1-204ENST00000479555 PPP4R3CPQ6ZMV5 832 aa17.53■□□□□ 0.4
CMSS1-204ENST00000479555 DCAF8L1A6NGE4 600 aa17.12■□□□□ 0.33
CMSS1-204ENST00000479555 CNKSR2Q8WXI2 1034 aa17.12■□□□□ 0.33
CMSS1-204ENST00000479555 HOXD11P31277 338 aaPredicted RBP17.08■□□□□ 0.32
CMSS1-204ENST00000479555 RNF216Q9NWF9 866 aaPredicted RBP16.95■□□□□ 0.3
CMSS1-204ENST00000479555 CACNB1Q02641 598 aaPredicted RBP16.76■□□□□ 0.27
CMSS1-204ENST00000479555 NCBP3Q53F19 620 aaKnown RBP16.76■□□□□ 0.27
CMSS1-204ENST00000479555 NPM3O75607 178 aaKnown RBP16.65■□□□□ 0.26
CMSS1-204ENST00000479555 RNF39Q9H2S5 420 aa16.65■□□□□ 0.26
CMSS1-204ENST00000479555 KCNA4P22459 653 aa16.41■□□□□ 0.22
CMSS1-204ENST00000479555 C1QBPQ07021 282 aaKnown RBP16.34■□□□□ 0.21
CMSS1-204ENST00000479555 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
CMSS1-204ENST00000479555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.33■□□□□ 0.2
CMSS1-204ENST00000479555 U3KPZ7 1027 aaPredicted RBP16.03■□□□□ 0.16
CMSS1-204ENST00000479555 SLC4A2P04920 1241 aa15.92■□□□□ 0.14
CMSS1-204ENST00000479555 SPINK5Q9NQ38 1064 aaPredicted RBP15.84■□□□□ 0.13
CMSS1-204ENST00000479555 CAPN15O75808 1086 aa15.75■□□□□ 0.11
CMSS1-204ENST00000479555 DSG3P32926 999 aa15.62■□□□□ 0.09
CMSS1-204ENST00000479555 TRHP20396 242 aaPredicted RBP15.53■□□□□ 0.08
CMSS1-204ENST00000479555 POTEHQ6S545 545 aa15.48■□□□□ 0.07
CMSS1-204ENST00000479555 ABCB7O75027 752 aa15.47■□□□□ 0.07
CMSS1-204ENST00000479555 SLC4A1APQ9BWU0 796 aaKnown RBP15.44■□□□□ 0.06
CMSS1-204ENST00000479555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.4■□□□□ 0.06
CMSS1-204ENST00000479555 HNRNPUL2Q1KMD3 747 aaKnown RBP15.4■□□□□ 0.06
CMSS1-204ENST00000479555 ZNF219Q9P2Y4 722 aaPredicted RBP15.38■□□□□ 0.05
CMSS1-204ENST00000479555 APLP2Q06481 763 aa15.37■□□□□ 0.05
CMSS1-204ENST00000479555 SAMD1Q6SPF0 538 aaPredicted RBP15.37■□□□□ 0.05
CMSS1-204ENST00000479555 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
CMSS1-204ENST00000479555 FOXD4L1Q9NU39 408 aa15.21■□□□□ 0.03
CMSS1-204ENST00000479555 ZBTB22O15209 634 aa15.14■□□□□ 0.01
CMSS1-204ENST00000479555 ATF5Q9Y2D1 282 aaPredicted RBP15.13■□□□□ 0.01
CMSS1-204ENST00000479555 POLA2Q14181 598 aa15.09■□□□□ 0.01
CMSS1-204ENST00000479555 RBM42Q9BTD8 480 aaKnown RBP14.79□□□□□ -0.04
CMSS1-204ENST00000479555 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
CMSS1-204ENST00000479555 ZBTB12Q9Y330 459 aaPredicted RBP14.64□□□□□ -0.07
CMSS1-204ENST00000479555 ATXN8OSP0DMR3 200 aa14.63□□□□□ -0.07
CMSS1-204ENST00000479555 CHRDL2Q6WN34 429 aa14.56□□□□□ -0.08
CMSS1-204ENST00000479555 AKT1S1Q96B36 256 aa14.5□□□□□ -0.09
CMSS1-204ENST00000479555 REM2Q8IYK8 340 aaPredicted RBP14.44□□□□□ -0.1
CMSS1-204ENST00000479555 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
CMSS1-204ENST00000479555 MKRN4PQ13434 485 aaPredicted RBP14.39□□□□□ -0.11
CMSS1-204ENST00000479555 FBLN2P98095 1184 aa14.36□□□□□ -0.11
CMSS1-204ENST00000479555 EHMT2Q96KQ7 1210 aa14.33□□□□□ -0.12
CMSS1-204ENST00000479555 PITPNM1O00562 1244 aa14.32□□□□□ -0.12
CMSS1-204ENST00000479555 SPDYE2BA6NHP3 402 aa14.25□□□□□ -0.13
CMSS1-204ENST00000479555 SPDYE6P0CI01 402 aa14.25□□□□□ -0.13
CMSS1-204ENST00000479555 SPDYE2Q495Y8 402 aa14.25□□□□□ -0.13
CMSS1-204ENST00000479555 PIP4P2Q8N4L2 257 aa14.25□□□□□ -0.13
CMSS1-204ENST00000479555 ZNF692Q9BU19 519 aaPredicted RBP14.14□□□□□ -0.15
CMSS1-204ENST00000479555 FXR2P51116 673 aaKnown RBP eCLIP14.12□□□□□ -0.15
CMSS1-204ENST00000479555 SSUH2Q9Y2M2 353 aa14.1□□□□□ -0.15
CMSS1-204ENST00000479555 SP7Q8TDD2 431 aaPredicted RBP14.08□□□□□ -0.16
CMSS1-204ENST00000479555 CLEC11AQ9Y240 323 aa14.08□□□□□ -0.16
CMSS1-204ENST00000479555 SPDYE1Q8NFV5 336 aaPredicted RBP14□□□□□ -0.17
CMSS1-204ENST00000479555 HAX1O00165 279 aa13.97□□□□□ -0.17
CMSS1-204ENST00000479555 PABPN1Q86U42 306 aaKnown RBP eCLIP13.97□□□□□ -0.17
CMSS1-204ENST00000479555 PRKAR2AP13861 404 aaKnown RBP13.93□□□□□ -0.18
CMSS1-204ENST00000479555 EVX2Q03828 476 aa13.9□□□□□ -0.18
CMSS1-204ENST00000479555 CHADLQ6NUI6 762 aa13.87□□□□□ -0.19
CMSS1-204ENST00000479555 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
CMSS1-204ENST00000479555 C19orf67A6NJJ6 358 aa13.67□□□□□ -0.22
CMSS1-204ENST00000479555 SPDYE4A6NLX3 237 aa13.67□□□□□ -0.22
CMSS1-204ENST00000479555 FARP1Q9Y4F1 1045 aaPredicted RBP13.56□□□□□ -0.24
CMSS1-204ENST00000479555 GABBR2O75899 941 aa13.5□□□□□ -0.25
CMSS1-204ENST00000479555 CREBZFQ9NS37 354 aa13.5□□□□□ -0.25
CMSS1-204ENST00000479555 CD44P16070 742 aaKnown RBP13.49□□□□□ -0.25
CMSS1-204ENST00000479555 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
CMSS1-204ENST00000479555 ZRANB1Q9UGI0 708 aa13.31□□□□□ -0.28
CMSS1-204ENST00000479555 PROM2Q8N271 834 aa13.3□□□□□ -0.28
CMSS1-204ENST00000479555 POTEIP0CG38 1075 aa13.27□□□□□ -0.29
CMSS1-204ENST00000479555 MNX1P50219 401 aaPredicted RBP13.27□□□□□ -0.29
CMSS1-204ENST00000479555 ZNF579Q8NAF0 562 aaKnown RBP13.23□□□□□ -0.29
CMSS1-204ENST00000479555 LHX8Q68G74 356 aa13.19□□□□□ -0.3
CMSS1-204ENST00000479555 PHF12Q96QT6 1004 aa13.19□□□□□ -0.3
CMSS1-204ENST00000479555 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
CMSS1-204ENST00000479555 NPM1P06748 294 aaKnown RBP eCLIP13.14□□□□□ -0.31
CMSS1-204ENST00000479555 PLSCR2Q9NRY7 297 aa13.12□□□□□ -0.31
CMSS1-204ENST00000479555 PAK3O75914 559 aaPredicted RBP13.11□□□□□ -0.31
CMSS1-204ENST00000479555 DCBLD2Q96PD2 775 aa13.1□□□□□ -0.31
CMSS1-204ENST00000479555 FKBP8Q14318 412 aa13.08□□□□□ -0.32
CMSS1-204ENST00000479555 CLCN6P51797 869 aa13.06□□□□□ -0.32
CMSS1-204ENST00000479555 TSPYL2Q9H2G4 693 aaPredicted RBP13.05□□□□□ -0.32
CMSS1-204ENST00000479555 MIER1Q8N108 512 aa13.03□□□□□ -0.32
CMSS1-204ENST00000479555 MS4A3Q96HJ5 214 aa12.99□□□□□ -0.33
CMSS1-204ENST00000479555 RASEFQ8IZ41 740 aa12.94□□□□□ -0.34
CMSS1-204ENST00000479555 PLCD3Q8N3E9 789 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms