RNA–Protein interactions for RNA: ENST00000478085.5

SGSM3-209, Transcript of small G protein signaling modulator 3, humanhuman

TSL 2

Gene SGSM3, Length 4,218 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGSM3-209ENST00000478085 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.2□□□□□ -0.32e-6■■■■■ 72.5
SGSM3-209ENST00000478085 SF3B1O75533 1304 aaKnown RBP eCLIP12.25□□□□□ -0.451e-6■■■■■ 69.6
SGSM3-209ENST00000478085 WDR43Q15061 677 aaKnown RBP eCLIP15.99■□□□□ 0.155e-9■■■■■ 55.5
SGSM3-209ENST00000478085 EFTUD2Q15029 972 aaKnown RBP eCLIP12.06□□□□□ -0.489e-7■■■■■ 37.9
SGSM3-209ENST00000478085 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.59□□□□□ -0.393e-7■■■■■ 34.9
SGSM3-209ENST00000478085 PABPC4Q13310 644 aaKnown RBP eCLIP13.22□□□□□ -0.296e-8■■■■■ 34.2
SGSM3-209ENST00000478085 SF3B4Q15427 424 aaKnown RBP eCLIP10.73□□□□□ -0.691e-8■■■■■ 32.7
SGSM3-209ENST00000478085 SMNDC1O75940 238 aaKnown RBP eCLIP11.67□□□□□ -0.545e-7■■■■■ 28.1
SGSM3-209ENST00000478085 GTF2F1P35269 517 aaKnown RBP eCLIP12.85□□□□□ -0.357e-7■■■■□ 25.3
SGSM3-209ENST00000478085 AQRO60306 1485 aaKnown RBP eCLIP16.44■□□□□ 0.226e-7■■■■□ 22.4
SGSM3-209ENST00000478085 RBFOX2O43251 390 aaKnown RBP eCLIP9.75□□□□□ -0.851e-6■■■■□ 22.4
SGSM3-209ENST00000478085 PPIGQ13427 754 aaKnown RBP eCLIP12.05□□□□□ -0.488e-7■■■■□ 22
SGSM3-209ENST00000478085 PCBP1Q15365 356 aaKnown RBP eCLIP12.32□□□□□ -0.446e-7■■■■□ 21.8
SGSM3-209ENST00000478085 SF3A3Q12874 501 aaKnown RBP eCLIP12.71□□□□□ -0.372e-7■■■□□ 19.1
SGSM3-209ENST00000478085 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.23□□□□□ -0.138e-7■■■□□ 16.9
SGSM3-209ENST00000478085 DDX6P26196 483 aaKnown RBP eCLIP11.77□□□□□ -0.533e-7■■■□□ 16.7
SGSM3-209ENST00000478085 XRCC6P12956 609 aaKnown RBP eCLIP13.65□□□□□ -0.224e-7■■■□□ 15.8
SGSM3-209ENST00000478085 LSM11P83369 360 aaKnown RBP eCLIP10.8□□□□□ -0.682e-8■■■□□ 14.9
SGSM3-209ENST00000478085 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.37□□□□□ -0.598e-7■■■□□ 14.6
SGSM3-209ENST00000478085 RBM15Q96T37 977 aaKnown RBP eCLIP12.42□□□□□ -0.422e-9■■□□□ 14.5
SGSM3-209ENST00000478085 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.32□□□□□ -0.767e-9■■□□□ 13.3
SGSM3-209ENST00000478085 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.61□□□□□ -0.393e-6■■□□□ 12
SGSM3-209ENST00000478085 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.3□□□□□ -0.282e-9■□□□□ 10.5
SGSM3-209ENST00000478085 ZNF622Q969S3 477 aaKnown RBP eCLIP14.05□□□□□ -0.161e-7■□□□□ 10.4
SGSM3-209ENST00000478085 NOLC1Q14978 699 aaKnown RBP eCLIP13.3□□□□□ -0.283e-6■□□□□ 8.5
Retrieved 25 of 25 RNA–protein pairs in 7.2 ms