RNA–Protein interactions for RNA: ENST00000477891.1

MINDY3-206, Transcript of MINDY lysine 48 deubiquitinase 3, humanhuman

TSL 1 (best)

Gene MINDY3, Length 2,307 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MINDY3-206ENST00000477891 NISCHQ9Y2I1 1504 aa22.34■■□□□ 1.17
MINDY3-206ENST00000477891 CCDC180Q9P1Z9 1646 aa19■□□□□ 0.63
MINDY3-206ENST00000477891 SHROOM4Q9ULL8 1493 aa18.93■□□□□ 0.62
MINDY3-206ENST00000477891 ZCCHC6Q5VYS8 1495 aaKnown RBP18.85■□□□□ 0.61
MINDY3-206ENST00000477891 DCAF8L2P0C7V8 631 aa18.62■□□□□ 0.57
MINDY3-206ENST00000477891 SUPT5HO00267 1087 aaKnown RBP18.5■□□□□ 0.55
MINDY3-206ENST00000477891 DCAF1Q9Y4B6 1507 aa18.31■□□□□ 0.52
MINDY3-206ENST00000477891 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
MINDY3-206ENST00000477891 MYO15BQ96JP2 1530 aa17.85■□□□□ 0.45
MINDY3-206ENST00000477891 ABCC9O60706 1549 aa17.82■□□□□ 0.44
MINDY3-206ENST00000477891 SCRIBQ14160 1630 aa17.82■□□□□ 0.44
MINDY3-206ENST00000477891 NACADO15069 1562 aa17.65■□□□□ 0.42
MINDY3-206ENST00000477891 RSF1Q96T23 1441 aaPredicted RBP17.63■□□□□ 0.41
MINDY3-206ENST00000477891 CECR2Q9BXF3 1484 aa17.47■□□□□ 0.39
MINDY3-206ENST00000477891 LOC105371045A0A1W2PR82 267 aa17.41■□□□□ 0.38
MINDY3-206ENST00000477891 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
MINDY3-206ENST00000477891 MROH2BQ7Z745 1585 aa17.37■□□□□ 0.37
MINDY3-206ENST00000477891 WIZO95785 1651 aa17.24■□□□□ 0.35
MINDY3-206ENST00000477891 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
MINDY3-206ENST00000477891 PCGF6Q9BYE7 350 aa17.16■□□□□ 0.34
MINDY3-206ENST00000477891 BAZ1AQ9NRL2 1556 aaPredicted RBP17.14■□□□□ 0.34
MINDY3-206ENST00000477891 UNC13AQ9UPW8 1703 aa17.12■□□□□ 0.33
MINDY3-206ENST00000477891 FAM9AQ8IZU1 332 aaPredicted RBP17.1■□□□□ 0.33
MINDY3-206ENST00000477891 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
MINDY3-206ENST00000477891 SMARCA4P51532 1647 aa17.02■□□□□ 0.31
MINDY3-206ENST00000477891 HRCP23327 699 aa17.02■□□□□ 0.31
MINDY3-206ENST00000477891 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
MINDY3-206ENST00000477891 EHMT2Q96KQ7 1210 aa16.96■□□□□ 0.31
MINDY3-206ENST00000477891 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
MINDY3-206ENST00000477891 CCDC88BA6NC98 1476 aa16.93■□□□□ 0.3
MINDY3-206ENST00000477891 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
MINDY3-206ENST00000477891 SMARCA2P51531 1590 aa16.87■□□□□ 0.29
MINDY3-206ENST00000477891 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
MINDY3-206ENST00000477891 ABCC8Q09428 1581 aa16.8■□□□□ 0.28
MINDY3-206ENST00000477891 PPARGC1BQ86YN6 1023 aaKnown RBP16.73■□□□□ 0.27
MINDY3-206ENST00000477891 PEG3Q9GZU2 1588 aa16.72■□□□□ 0.27
MINDY3-206ENST00000477891 ATAD2BQ9ULI0 1458 aa16.67■□□□□ 0.26
MINDY3-206ENST00000477891 SOGA1O94964 1423 aa16.64■□□□□ 0.25
MINDY3-206ENST00000477891 BAZ1BQ9UIG0 1483 aaKnown RBP16.58■□□□□ 0.24
MINDY3-206ENST00000477891 RUSC2Q8N2Y8 1516 aa16.58■□□□□ 0.24
MINDY3-206ENST00000477891 WRNQ14191 1432 aaPredicted RBP eCLIP16.55■□□□□ 0.24
MINDY3-206ENST00000477891 CSRNP3Q8WYN3 585 aa16.54■□□□□ 0.24
MINDY3-206ENST00000477891 EEA1Q15075 1411 aa16.47■□□□□ 0.23
MINDY3-206ENST00000477891 SYNJ1O43426 1573 aa16.46■□□□□ 0.22
MINDY3-206ENST00000477891 TNIKQ9UKE5 1360 aa16.45■□□□□ 0.22
MINDY3-206ENST00000477891 CEP162Q5TB80 1403 aa16.45■□□□□ 0.22
MINDY3-206ENST00000477891 UBTFP17480 764 aaKnown RBP16.45■□□□□ 0.22
MINDY3-206ENST00000477891 NCAPD3P42695 1498 aa16.38■□□□□ 0.21
MINDY3-206ENST00000477891 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
MINDY3-206ENST00000477891 TTBK1Q5TCY1 1321 aaPredicted RBP16.35■□□□□ 0.21
MINDY3-206ENST00000477891 GOLGA3Q08378 1498 aa16.35■□□□□ 0.21
MINDY3-206ENST00000477891 HMGXB3Q12766 1538 aa16.31■□□□□ 0.2
MINDY3-206ENST00000477891 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
MINDY3-206ENST00000477891 TOP2BQ02880 1626 aa16.26■□□□□ 0.19
MINDY3-206ENST00000477891 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.25■□□□□ 0.19
MINDY3-206ENST00000477891 KIF21BO75037 1637 aa16.24■□□□□ 0.19
MINDY3-206ENST00000477891 RAPGEF2Q9Y4G8 1499 aa16.23■□□□□ 0.19
MINDY3-206ENST00000477891 CFTRP13569 1480 aa16.19■□□□□ 0.18
MINDY3-206ENST00000477891 BIVM-ERCC5R4GMW8 1640 aa16.18■□□□□ 0.18
MINDY3-206ENST00000477891 CLIP1P30622 1438 aa16.18■□□□□ 0.18
MINDY3-206ENST00000477891 RANGAP1P46060 587 aaPredicted RBP16.18■□□□□ 0.18
MINDY3-206ENST00000477891 CCER1Q8TC90 406 aaPredicted RBP16.17■□□□□ 0.18
MINDY3-206ENST00000477891 CUX1P39880 1505 aa16.17■□□□□ 0.18
MINDY3-206ENST00000477891 PRXQ9BXM0 1461 aa16.09■□□□□ 0.17
MINDY3-206ENST00000477891 VPS8Q8N3P4 1428 aa16.08■□□□□ 0.17
MINDY3-206ENST00000477891 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
MINDY3-206ENST00000477891 KIF27Q86VH2 1401 aa16.04■□□□□ 0.16
MINDY3-206ENST00000477891 CC2D2AQ9P2K1 1620 aa16.03■□□□□ 0.16
MINDY3-206ENST00000477891 ERICH3Q5RHP9 1530 aa16.02■□□□□ 0.16
MINDY3-206ENST00000477891 APLP2Q06481 763 aa16.01■□□□□ 0.15
MINDY3-206ENST00000477891 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
MINDY3-206ENST00000477891 IGF1RP08069 1367 aa15.95■□□□□ 0.14
MINDY3-206ENST00000477891 PRDM2Q13029 1718 aa15.95■□□□□ 0.14
MINDY3-206ENST00000477891 ARAP1Q96P48 1450 aa15.94■□□□□ 0.14
MINDY3-206ENST00000477891 CUX2O14529 1486 aa15.93■□□□□ 0.14
MINDY3-206ENST00000477891 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
MINDY3-206ENST00000477891 KANK4Q5T7N3 995 aaPredicted RBP15.9■□□□□ 0.14
MINDY3-206ENST00000477891 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
MINDY3-206ENST00000477891 ARHGAP35Q9NRY4 1499 aa15.85■□□□□ 0.13
MINDY3-206ENST00000477891 NESP48681 1621 aa15.85■□□□□ 0.13
MINDY3-206ENST00000477891 CARMIL1Q5VZK9 1371 aa15.85■□□□□ 0.13
MINDY3-206ENST00000477891 DNAJC5BQ9UF47 199 aa15.8■□□□□ 0.12
MINDY3-206ENST00000477891 RAD54L2Q9Y4B4 1467 aa15.79■□□□□ 0.12
MINDY3-206ENST00000477891 TOPBP1Q92547 1522 aa15.76■□□□□ 0.11
MINDY3-206ENST00000477891 POLA1P09884 1462 aaPredicted RBP15.75■□□□□ 0.11
MINDY3-206ENST00000477891 DIEXFQ68CQ4 756 aaKnown RBP15.74■□□□□ 0.11
MINDY3-206ENST00000477891 DNMBPQ6XZF7 1577 aa15.74■□□□□ 0.11
MINDY3-206ENST00000477891 ABCA10Q8WWZ4 1543 aa15.72■□□□□ 0.11
MINDY3-206ENST00000477891 P3H3Q8IVL6 736 aa15.7■□□□□ 0.1
MINDY3-206ENST00000477891 RRBP1Q9P2E9 1410 aaKnown RBP15.69■□□□□ 0.1
MINDY3-206ENST00000477891 ZNF316A6NFI3 1004 aaPredicted RBP15.68■□□□□ 0.1
MINDY3-206ENST00000477891 URB2Q14146 1524 aaKnown RBP15.67■□□□□ 0.1
MINDY3-206ENST00000477891 LAMC3Q9Y6N6 1575 aa15.65■□□□□ 0.1
MINDY3-206ENST00000477891 CCNB3Q8WWL7 1395 aa15.64■□□□□ 0.09
MINDY3-206ENST00000477891 DHX57Q6P158 1386 aaKnown RBP15.63■□□□□ 0.09
MINDY3-206ENST00000477891 TDRD9Q8NDG6 1382 aaKnown RBP15.63■□□□□ 0.09
MINDY3-206ENST00000477891 ITGAEP38570 1179 aa15.62■□□□□ 0.09
MINDY3-206ENST00000477891 TIAM1Q13009 1591 aa15.6■□□□□ 0.09
MINDY3-206ENST00000477891 ATP1B4Q9UN42 357 aaPredicted RBP15.6■□□□□ 0.09
MINDY3-206ENST00000477891 PDS5BQ9NTI5 1447 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms