RNA–Protein interactions for RNA: ENST00000477583.1

CACUL1-202, Transcript of CDK2 associated cullin domain 1, humanhuman

TSL 1 (best)

Gene CACUL1, Length 432 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACUL1-202ENST00000477583 AEBP2Q6ZN18 517 aaPredicted RBP17.47■□□□□ 0.39
CACUL1-202ENST00000477583 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
CACUL1-202ENST00000477583 SENP3Q9H4L4 574 aaPredicted RBP14.94□□□□□ -0.02
CACUL1-202ENST00000477583 PHF23Q9BUL5 403 aaPredicted RBP14.71□□□□□ -0.05
CACUL1-202ENST00000477583 FOXD1Q16676 465 aa13.9□□□□□ -0.18
CACUL1-202ENST00000477583 PLPPR3Q6T4P5 718 aa13.29□□□□□ -0.28
CACUL1-202ENST00000477583 MSH5O43196 834 aa13.03□□□□□ -0.32
CACUL1-202ENST00000477583 PIAS4Q8N2W9 510 aaPredicted RBP13.02□□□□□ -0.33
CACUL1-202ENST00000477583 PPP6R1Q9UPN7 881 aa12.97□□□□□ -0.33
CACUL1-202ENST00000477583 ADRA2BP18089 450 aa12.95□□□□□ -0.34
CACUL1-202ENST00000477583 POTEDQ86YR6 584 aa12.86□□□□□ -0.35
CACUL1-202ENST00000477583 SCAF1Q9H7N4 1312 aaKnown RBP11.88□□□□□ -0.51
CACUL1-202ENST00000477583 MAPK8IP2Q13387 824 aaPredicted RBP11.88□□□□□ -0.51
CACUL1-202ENST00000477583 DMRT2Q9Y5R5 561 aa11.84□□□□□ -0.51
CACUL1-202ENST00000477583 PPP4R3CPQ6ZMV5 832 aa11.64□□□□□ -0.55
CACUL1-202ENST00000477583 CNKSR2Q8WXI2 1034 aa11.42□□□□□ -0.58
CACUL1-202ENST00000477583 HOXD11P31277 338 aaPredicted RBP11.39□□□□□ -0.59
CACUL1-202ENST00000477583 DCAF8L1A6NGE4 600 aa11.38□□□□□ -0.59
CACUL1-202ENST00000477583 RNF216Q9NWF9 866 aaPredicted RBP11.31□□□□□ -0.6
CACUL1-202ENST00000477583 NCBP3Q53F19 620 aaKnown RBP11.21□□□□□ -0.61
CACUL1-202ENST00000477583 CACNB1Q02641 598 aaPredicted RBP11.18□□□□□ -0.62
CACUL1-202ENST00000477583 RNF39Q9H2S5 420 aa11.1□□□□□ -0.63
CACUL1-202ENST00000477583 NPM3O75607 178 aaKnown RBP11.03□□□□□ -0.64
CACUL1-202ENST00000477583 DNAJC5BQ9UF47 199 aa10.99□□□□□ -0.65
CACUL1-202ENST00000477583 C1QBPQ07021 282 aaKnown RBP10.95□□□□□ -0.66
CACUL1-202ENST00000477583 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.87□□□□□ -0.67
CACUL1-202ENST00000477583 KCNA4P22459 653 aa10.81□□□□□ -0.68
CACUL1-202ENST00000477583 U3KPZ7 1027 aaPredicted RBP10.64□□□□□ -0.71
CACUL1-202ENST00000477583 SLC4A2P04920 1241 aa10.52□□□□□ -0.73
CACUL1-202ENST00000477583 CAPN15O75808 1086 aa10.48□□□□□ -0.73
CACUL1-202ENST00000477583 SPINK5Q9NQ38 1064 aaPredicted RBP10.48□□□□□ -0.73
CACUL1-202ENST00000477583 DSG3P32926 999 aa10.4□□□□□ -0.74
CACUL1-202ENST00000477583 APLP2Q06481 763 aa10.38□□□□□ -0.75
CACUL1-202ENST00000477583 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.36□□□□□ -0.75
CACUL1-202ENST00000477583 HNRNPUL2Q1KMD3 747 aaKnown RBP10.36□□□□□ -0.75
CACUL1-202ENST00000477583 TRHP20396 242 aaPredicted RBP10.32□□□□□ -0.76
CACUL1-202ENST00000477583 ZNF219Q9P2Y4 722 aaPredicted RBP10.3□□□□□ -0.76
CACUL1-202ENST00000477583 SAMD1Q6SPF0 538 aaPredicted RBP10.29□□□□□ -0.76
CACUL1-202ENST00000477583 ABCB7O75027 752 aa10.24□□□□□ -0.77
CACUL1-202ENST00000477583 MYCNP04198 464 aaPredicted RBP10.23□□□□□ -0.77
CACUL1-202ENST00000477583 SLC4A1APQ9BWU0 796 aaKnown RBP10.22□□□□□ -0.77
CACUL1-202ENST00000477583 FOXD4L1Q9NU39 408 aa10.1□□□□□ -0.79
CACUL1-202ENST00000477583 POLA2Q14181 598 aa10.02□□□□□ -0.81
CACUL1-202ENST00000477583 POTEHQ6S545 545 aa9.96□□□□□ -0.82
CACUL1-202ENST00000477583 RBM42Q9BTD8 480 aaKnown RBP9.96□□□□□ -0.82
CACUL1-202ENST00000477583 ATF5Q9Y2D1 282 aaPredicted RBP9.95□□□□□ -0.82
CACUL1-202ENST00000477583 ZBTB22O15209 634 aa9.93□□□□□ -0.82
CACUL1-202ENST00000477583 ZBTB12Q9Y330 459 aaPredicted RBP9.85□□□□□ -0.83
CACUL1-202ENST00000477583 ATXN8OSP0DMR3 200 aa9.79□□□□□ -0.84
CACUL1-202ENST00000477583 OSCARQ8IYS5 282 aa9.72□□□□□ -0.85
CACUL1-202ENST00000477583 CHRDL2Q6WN34 429 aa9.71□□□□□ -0.86
CACUL1-202ENST00000477583 AKT1S1Q96B36 256 aa9.71□□□□□ -0.86
CACUL1-202ENST00000477583 FBLN2P98095 1184 aa9.6□□□□□ -0.87
CACUL1-202ENST00000477583 REM2Q8IYK8 340 aaPredicted RBP9.6□□□□□ -0.87
CACUL1-202ENST00000477583 SPDYE2BA6NHP3 402 aa9.52□□□□□ -0.89
CACUL1-202ENST00000477583 PITPNM1O00562 1244 aa9.52□□□□□ -0.89
CACUL1-202ENST00000477583 SPDYE6P0CI01 402 aa9.52□□□□□ -0.89
CACUL1-202ENST00000477583 SPDYE2Q495Y8 402 aa9.52□□□□□ -0.89
CACUL1-202ENST00000477583 MKRN4PQ13434 485 aaPredicted RBP9.49□□□□□ -0.89
CACUL1-202ENST00000477583 PIP4P2Q8N4L2 257 aa9.48□□□□□ -0.89
CACUL1-202ENST00000477583 CSRNP3Q8WYN3 585 aa9.47□□□□□ -0.89
CACUL1-202ENST00000477583 FXR2P51116 673 aaKnown RBP eCLIP9.41□□□□□ -0.9
CACUL1-202ENST00000477583 ZNF692Q9BU19 519 aaPredicted RBP9.41□□□□□ -0.9
CACUL1-202ENST00000477583 SSUH2Q9Y2M2 353 aa9.39□□□□□ -0.91
CACUL1-202ENST00000477583 EHMT2Q96KQ7 1210 aa9.38□□□□□ -0.91
CACUL1-202ENST00000477583 SPDYE1Q8NFV5 336 aaPredicted RBP9.37□□□□□ -0.91
CACUL1-202ENST00000477583 CLEC11AQ9Y240 323 aa9.36□□□□□ -0.91
CACUL1-202ENST00000477583 SP7Q8TDD2 431 aaPredicted RBP9.35□□□□□ -0.91
CACUL1-202ENST00000477583 HAX1O00165 279 aa9.32□□□□□ -0.92
CACUL1-202ENST00000477583 PRKAR2AP13861 404 aaKnown RBP9.28□□□□□ -0.92
CACUL1-202ENST00000477583 PABPN1Q86U42 306 aaKnown RBP eCLIP9.27□□□□□ -0.93
CACUL1-202ENST00000477583 PRR29P0C7W0 189 aa9.19□□□□□ -0.94
CACUL1-202ENST00000477583 EVX2Q03828 476 aa9.17□□□□□ -0.94
CACUL1-202ENST00000477583 CHADLQ6NUI6 762 aa9.16□□□□□ -0.94
CACUL1-202ENST00000477583 C19orf67A6NJJ6 358 aa9.12□□□□□ -0.95
CACUL1-202ENST00000477583 SPDYE4A6NLX3 237 aa9.07□□□□□ -0.96
CACUL1-202ENST00000477583 STAG3Q9UJ98 1225 aa9.02□□□□□ -0.97
CACUL1-202ENST00000477583 FARP1Q9Y4F1 1045 aaPredicted RBP9.02□□□□□ -0.97
CACUL1-202ENST00000477583 CD44P16070 742 aaKnown RBP8.99□□□□□ -0.97
CACUL1-202ENST00000477583 GABBR2O75899 941 aa8.98□□□□□ -0.97
CACUL1-202ENST00000477583 CREBZFQ9NS37 354 aa8.94□□□□□ -0.98
CACUL1-202ENST00000477583 CLCN6P51797 869 aa8.86□□□□□ -0.99
CACUL1-202ENST00000477583 ZRANB1Q9UGI0 708 aa8.85□□□□□ -0.99
CACUL1-202ENST00000477583 ZNF579Q8NAF0 562 aaKnown RBP8.84□□□□□ -0.99
CACUL1-202ENST00000477583 PROM2Q8N271 834 aa8.82□□□□□ -1
CACUL1-202ENST00000477583 PAK3O75914 559 aaPredicted RBP8.81□□□□□ -1
CACUL1-202ENST00000477583 NPM1P06748 294 aaKnown RBP eCLIP8.81□□□□□ -1
CACUL1-202ENST00000477583 POTEIP0CG38 1075 aa8.78□□□□□ -1
CACUL1-202ENST00000477583 MNX1P50219 401 aaPredicted RBP8.78□□□□□ -1
CACUL1-202ENST00000477583 LHX8Q68G74 356 aa8.76□□□□□ -1.01
CACUL1-202ENST00000477583 DCBLD2Q96PD2 775 aa8.76□□□□□ -1.01
CACUL1-202ENST00000477583 PHF12Q96QT6 1004 aa8.73□□□□□ -1.01
CACUL1-202ENST00000477583 GALR2O43603 387 aaPredicted RBP8.72□□□□□ -1.01
CACUL1-202ENST00000477583 PLEKHG5O94827 1062 aa8.68□□□□□ -1.02
CACUL1-202ENST00000477583 MIER1Q8N108 512 aa8.65□□□□□ -1.02
CACUL1-202ENST00000477583 TSPYL2Q9H2G4 693 aaPredicted RBP8.65□□□□□ -1.02
CACUL1-202ENST00000477583 FKBP8Q14318 412 aa8.62□□□□□ -1.03
CACUL1-202ENST00000477583 MS4A3Q96HJ5 214 aa8.62□□□□□ -1.03
CACUL1-202ENST00000477583 PLCD3Q8N3E9 789 aa8.6□□□□□ -1.03
CACUL1-202ENST00000477583 CCDC61Q9Y6R9 512 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms