RNA–Protein interactions for RNA: ENST00000476932.5

LIMS2-214, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,269 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-214ENST00000476932 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
LIMS2-214ENST00000476932 CCDC180Q9P1Z9 1646 aa38.03■■■■□ 3.68
LIMS2-214ENST00000476932 ZCCHC6Q5VYS8 1495 aaKnown RBP37.63■■■■□ 3.61
LIMS2-214ENST00000476932 SHROOM4Q9ULL8 1493 aa37.5■■■■□ 3.59
LIMS2-214ENST00000476932 SUPT5HO00267 1087 aaKnown RBP36.65■■■■□ 3.46
LIMS2-214ENST00000476932 DCAF1Q9Y4B6 1507 aa36.6■■■■□ 3.45
LIMS2-214ENST00000476932 DCAF8L2P0C7V8 631 aa36.41■■■■□ 3.42
LIMS2-214ENST00000476932 CHIC1Q5VXU3 224 aa35.74■■■■□ 3.31
LIMS2-214ENST00000476932 MYO15BQ96JP2 1530 aa35.7■■■■□ 3.31
LIMS2-214ENST00000476932 ABCC9O60706 1549 aa35.53■■■■□ 3.28
LIMS2-214ENST00000476932 SCRIBQ14160 1630 aa35.42■■■■□ 3.26
LIMS2-214ENST00000476932 NACADO15069 1562 aa35.07■■■■□ 3.2
LIMS2-214ENST00000476932 RSF1Q96T23 1441 aaPredicted RBP35.07■■■■□ 3.2
LIMS2-214ENST00000476932 RB1CC1Q8TDY2 1594 aa34.76■■■■□ 3.15
LIMS2-214ENST00000476932 CECR2Q9BXF3 1484 aa34.6■■■■□ 3.13
LIMS2-214ENST00000476932 LOC105371045A0A1W2PR82 267 aa34.56■■■■□ 3.12
LIMS2-214ENST00000476932 MROH2BQ7Z745 1585 aa34.53■■■■□ 3.12
LIMS2-214ENST00000476932 HRCP23327 699 aa34.41■■■■□ 3.1
LIMS2-214ENST00000476932 WIZO95785 1651 aa34.37■■■■□ 3.09
LIMS2-214ENST00000476932 PCGF6Q9BYE7 350 aa34.36■■■■□ 3.09
LIMS2-214ENST00000476932 BAZ1AQ9NRL2 1556 aaPredicted RBP34.22■■■■□ 3.07
LIMS2-214ENST00000476932 TRIM41Q8WV44 630 aa34.21■■■■□ 3.07
LIMS2-214ENST00000476932 UNC13AQ9UPW8 1703 aa34.15■■■■□ 3.06
LIMS2-214ENST00000476932 EIF4G1Q04637 1599 aaKnown RBP34.03■■■■□ 3.04
LIMS2-214ENST00000476932 SMARCA4P51532 1647 aa33.93■■■■□ 3.02
LIMS2-214ENST00000476932 TOP2AP11388 1531 aaKnown RBP33.86■■■■□ 3.01
LIMS2-214ENST00000476932 TRIM26Q12899 539 aaPredicted RBP33.83■■■■□ 3.01
LIMS2-214ENST00000476932 FAM9AQ8IZU1 332 aaPredicted RBP33.83■■■■□ 3.01
LIMS2-214ENST00000476932 SMARCA2P51531 1590 aa33.68■■■□□ 2.98
LIMS2-214ENST00000476932 BICRAQ9NZM4 1560 aa33.63■■■□□ 2.97
LIMS2-214ENST00000476932 PPARGC1BQ86YN6 1023 aaKnown RBP33.62■■■□□ 2.97
LIMS2-214ENST00000476932 CCDC88BA6NC98 1476 aa33.62■■■□□ 2.97
LIMS2-214ENST00000476932 ABCC8Q09428 1581 aa33.49■■■□□ 2.95
LIMS2-214ENST00000476932 EHMT2Q96KQ7 1210 aa33.44■■■□□ 2.94
LIMS2-214ENST00000476932 PEG3Q9GZU2 1588 aa33.36■■■□□ 2.93
LIMS2-214ENST00000476932 PABPN1Q86U42 306 aaKnown RBP eCLIP33.32■■■□□ 2.93
LIMS2-214ENST00000476932 SOGA1O94964 1423 aa33.09■■■□□ 2.89
LIMS2-214ENST00000476932 ZEB1P37275 1124 aaPredicted RBP33.03■■■□□ 2.88
LIMS2-214ENST00000476932 ATAD2BQ9ULI0 1458 aa33■■■□□ 2.87
LIMS2-214ENST00000476932 EEA1Q15075 1411 aa32.99■■■□□ 2.87
LIMS2-214ENST00000476932 RUSC2Q8N2Y8 1516 aa32.95■■■□□ 2.87
LIMS2-214ENST00000476932 WRNQ14191 1432 aaPredicted RBP eCLIP32.92■■■□□ 2.86
LIMS2-214ENST00000476932 CEP162Q5TB80 1403 aa32.9■■■□□ 2.86
LIMS2-214ENST00000476932 BAZ1BQ9UIG0 1483 aaKnown RBP32.88■■■□□ 2.85
LIMS2-214ENST00000476932 TNIKQ9UKE5 1360 aa32.88■■■□□ 2.85
LIMS2-214ENST00000476932 SYNJ1O43426 1573 aa32.87■■■□□ 2.85
LIMS2-214ENST00000476932 CSRNP3Q8WYN3 585 aa32.81■■■□□ 2.84
LIMS2-214ENST00000476932 GOLGA3Q08378 1498 aa32.73■■■□□ 2.83
LIMS2-214ENST00000476932 KIF21BO75037 1637 aa32.65■■■□□ 2.82
LIMS2-214ENST00000476932 CEP164Q9UPV0 1460 aa32.57■■■□□ 2.8
LIMS2-214ENST00000476932 UBTFP17480 764 aaKnown RBP32.56■■■□□ 2.8
LIMS2-214ENST00000476932 TOP2BQ02880 1626 aa32.5■■■□□ 2.79
LIMS2-214ENST00000476932 HMGXB3Q12766 1538 aa32.48■■■□□ 2.79
LIMS2-214ENST00000476932 BIVM-ERCC5R4GMW8 1640 aa32.45■■■□□ 2.79
LIMS2-214ENST00000476932 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.44■■■□□ 2.78
LIMS2-214ENST00000476932 NCAPD3P42695 1498 aa32.4■■■□□ 2.78
LIMS2-214ENST00000476932 TTBK1Q5TCY1 1321 aaPredicted RBP32.37■■■□□ 2.77
LIMS2-214ENST00000476932 RAPGEF2Q9Y4G8 1499 aa32.33■■■□□ 2.77
LIMS2-214ENST00000476932 CCER1Q8TC90 406 aaPredicted RBP32.32■■■□□ 2.76
LIMS2-214ENST00000476932 CLIP1P30622 1438 aa32.3■■■□□ 2.76
LIMS2-214ENST00000476932 VPS8Q8N3P4 1428 aa32.2■■■□□ 2.74
LIMS2-214ENST00000476932 CUX1P39880 1505 aa32.17■■■□□ 2.74
LIMS2-214ENST00000476932 ERICH3Q5RHP9 1530 aa32.13■■■□□ 2.73
LIMS2-214ENST00000476932 CFTRP13569 1480 aa32.11■■■□□ 2.73
LIMS2-214ENST00000476932 PRXQ9BXM0 1461 aa32.09■■■□□ 2.73
LIMS2-214ENST00000476932 PRDM2Q13029 1718 aa32.08■■■□□ 2.73
LIMS2-214ENST00000476932 ARAP1Q96P48 1450 aa31.9■■■□□ 2.7
LIMS2-214ENST00000476932 KIF27Q86VH2 1401 aa31.89■■■□□ 2.7
LIMS2-214ENST00000476932 RANGAP1P46060 587 aaPredicted RBP31.83■■■□□ 2.69
LIMS2-214ENST00000476932 APLP2Q06481 763 aa31.78■■■□□ 2.68
LIMS2-214ENST00000476932 HNRNPUL2Q1KMD3 747 aaKnown RBP31.75■■■□□ 2.67
LIMS2-214ENST00000476932 CADPSQ9ULU8 1353 aa31.7■■■□□ 2.66
LIMS2-214ENST00000476932 CC2D2AQ9P2K1 1620 aa31.66■■■□□ 2.66
LIMS2-214ENST00000476932 DIEXFQ68CQ4 756 aaKnown RBP31.65■■■□□ 2.66
LIMS2-214ENST00000476932 ARHGAP35Q9NRY4 1499 aa31.62■■■□□ 2.65
LIMS2-214ENST00000476932 CUX2O14529 1486 aa31.61■■■□□ 2.65
LIMS2-214ENST00000476932 SCAF1Q9H7N4 1312 aaKnown RBP31.58■■■□□ 2.65
LIMS2-214ENST00000476932 FGD5Q6ZNL6 1462 aa31.57■■■□□ 2.64
LIMS2-214ENST00000476932 IGF1RP08069 1367 aa31.54■■■□□ 2.64
LIMS2-214ENST00000476932 KANK4Q5T7N3 995 aaPredicted RBP31.54■■■□□ 2.64
LIMS2-214ENST00000476932 ZNF316A6NFI3 1004 aaPredicted RBP31.5■■■□□ 2.63
LIMS2-214ENST00000476932 RRBP1Q9P2E9 1410 aaKnown RBP31.46■■■□□ 2.63
LIMS2-214ENST00000476932 FANCD2Q9BXW9 1451 aa31.42■■■□□ 2.62
LIMS2-214ENST00000476932 CARMIL1Q5VZK9 1371 aa31.38■■■□□ 2.61
LIMS2-214ENST00000476932 DNMBPQ6XZF7 1577 aa31.35■■■□□ 2.61
LIMS2-214ENST00000476932 ACIN1Q9UKV3 1341 aaKnown RBP31.34■■■□□ 2.61
LIMS2-214ENST00000476932 DHX57Q6P158 1386 aaKnown RBP31.32■■■□□ 2.6
LIMS2-214ENST00000476932 TIAM1Q13009 1591 aa31.3■■■□□ 2.6
LIMS2-214ENST00000476932 MAP3K1Q13233 1512 aa31.3■■■□□ 2.6
LIMS2-214ENST00000476932 NEUROD1Q13562 356 aa31.29■■■□□ 2.6
LIMS2-214ENST00000476932 CLSPNQ9HAW4 1339 aa31.27■■■□□ 2.6
LIMS2-214ENST00000476932 ABCA10Q8WWZ4 1543 aa31.24■■■□□ 2.59
LIMS2-214ENST00000476932 TOPBP1Q92547 1522 aa31.24■■■□□ 2.59
LIMS2-214ENST00000476932 CCNB3Q8WWL7 1395 aa31.24■■■□□ 2.59
LIMS2-214ENST00000476932 POLA1P09884 1462 aaPredicted RBP31.22■■■□□ 2.59
LIMS2-214ENST00000476932 NESP48681 1621 aa31.22■■■□□ 2.59
LIMS2-214ENST00000476932 RAD54L2Q9Y4B4 1467 aa31.21■■■□□ 2.59
LIMS2-214ENST00000476932 CFAP43Q8NDM7 1665 aa31.18■■■□□ 2.58
LIMS2-214ENST00000476932 PCF11O94913 1555 aaKnown RBP31.14■■■□□ 2.58
LIMS2-214ENST00000476932 CUL7Q14999 1698 aa31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms