RNA–Protein interactions for RNA: ENST00000475401.1

TM9SF3-204, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 2

Gene TM9SF3, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-204ENST00000475401 AEBP2Q6ZN18 517 aaPredicted RBP28.44■■■□□ 2.14
TM9SF3-204ENST00000475401 CHIC1Q5VXU3 224 aa28.04■■■□□ 2.08
TM9SF3-204ENST00000475401 PHF23Q9BUL5 403 aaPredicted RBP24.58■■□□□ 1.53
TM9SF3-204ENST00000475401 SENP3Q9H4L4 574 aaPredicted RBP24.27■■□□□ 1.48
TM9SF3-204ENST00000475401 PLPPR3Q6T4P5 718 aa22.93■■□□□ 1.26
TM9SF3-204ENST00000475401 FOXD1Q16676 465 aa22.4■■□□□ 1.18
TM9SF3-204ENST00000475401 ADRA2BP18089 450 aa21.68■■□□□ 1.06
TM9SF3-204ENST00000475401 PPP6R1Q9UPN7 881 aa21.64■■□□□ 1.05
TM9SF3-204ENST00000475401 PIAS4Q8N2W9 510 aaPredicted RBP21.26■□□□□ 0.99
TM9SF3-204ENST00000475401 MSH5O43196 834 aa20.72■□□□□ 0.91
TM9SF3-204ENST00000475401 PPP4R3CPQ6ZMV5 832 aa20.18■□□□□ 0.82
TM9SF3-204ENST00000475401 SCAF1Q9H7N4 1312 aaKnown RBP20.02■□□□□ 0.8
TM9SF3-204ENST00000475401 KCNA4P22459 653 aa19.86■□□□□ 0.77
TM9SF3-204ENST00000475401 NCBP3Q53F19 620 aaKnown RBP19.82■□□□□ 0.76
TM9SF3-204ENST00000475401 CNKSR2Q8WXI2 1034 aa19.61■□□□□ 0.73
TM9SF3-204ENST00000475401 MAPK8IP2Q13387 824 aaPredicted RBP19.59■□□□□ 0.73
TM9SF3-204ENST00000475401 NPM3O75607 178 aaKnown RBP19.37■□□□□ 0.69
TM9SF3-204ENST00000475401 DMRT2Q9Y5R5 561 aa19.35■□□□□ 0.69
TM9SF3-204ENST00000475401 RNF216Q9NWF9 866 aaPredicted RBP19.17■□□□□ 0.66
TM9SF3-204ENST00000475401 SLC4A1APQ9BWU0 796 aaKnown RBP19.03■□□□□ 0.64
TM9SF3-204ENST00000475401 HOXD11P31277 338 aaPredicted RBP19■□□□□ 0.63
TM9SF3-204ENST00000475401 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
TM9SF3-204ENST00000475401 EHMT2Q96KQ7 1210 aa18.67■□□□□ 0.58
TM9SF3-204ENST00000475401 DCAF8L1A6NGE4 600 aa18.62■□□□□ 0.57
TM9SF3-204ENST00000475401 POTEDQ86YR6 584 aa18.46■□□□□ 0.55
TM9SF3-204ENST00000475401 FOXD4L1Q9NU39 408 aa18.3■□□□□ 0.52
TM9SF3-204ENST00000475401 CSRNP3Q8WYN3 585 aa18.29■□□□□ 0.52
TM9SF3-204ENST00000475401 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.22■□□□□ 0.51
TM9SF3-204ENST00000475401 ZBTB22O15209 634 aa18.2■□□□□ 0.5
TM9SF3-204ENST00000475401 SLC4A2P04920 1241 aa18.2■□□□□ 0.5
TM9SF3-204ENST00000475401 MYCNP04198 464 aaPredicted RBP17.98■□□□□ 0.47
TM9SF3-204ENST00000475401 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.84■□□□□ 0.45
TM9SF3-204ENST00000475401 HNRNPUL2Q1KMD3 747 aaKnown RBP17.84■□□□□ 0.45
TM9SF3-204ENST00000475401 U3KPZ7 1027 aaPredicted RBP17.82■□□□□ 0.44
TM9SF3-204ENST00000475401 SAMD1Q6SPF0 538 aaPredicted RBP17.74■□□□□ 0.43
TM9SF3-204ENST00000475401 RNF39Q9H2S5 420 aa17.68■□□□□ 0.42
TM9SF3-204ENST00000475401 ATXN8OSP0DMR3 200 aa17.67■□□□□ 0.42
TM9SF3-204ENST00000475401 APLP2Q06481 763 aa17.66■□□□□ 0.42
TM9SF3-204ENST00000475401 C1QBPQ07021 282 aaKnown RBP17.56■□□□□ 0.4
TM9SF3-204ENST00000475401 ATF5Q9Y2D1 282 aaPredicted RBP17.34■□□□□ 0.37
TM9SF3-204ENST00000475401 CAPN15O75808 1086 aa17.31■□□□□ 0.36
TM9SF3-204ENST00000475401 ZNF219Q9P2Y4 722 aaPredicted RBP17.29■□□□□ 0.36
TM9SF3-204ENST00000475401 SPINK5Q9NQ38 1064 aaPredicted RBP17.27■□□□□ 0.36
TM9SF3-204ENST00000475401 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
TM9SF3-204ENST00000475401 CACNB1Q02641 598 aaPredicted RBP17.19■□□□□ 0.34
TM9SF3-204ENST00000475401 POLA2Q14181 598 aa16.98■□□□□ 0.31
TM9SF3-204ENST00000475401 ABCB7O75027 752 aa16.93■□□□□ 0.3
TM9SF3-204ENST00000475401 DSG3P32926 999 aa16.88■□□□□ 0.29
TM9SF3-204ENST00000475401 FBLN2P98095 1184 aa16.82■□□□□ 0.28
TM9SF3-204ENST00000475401 ZBTB12Q9Y330 459 aaPredicted RBP16.82■□□□□ 0.28
TM9SF3-204ENST00000475401 FKBP8Q14318 412 aa16.62■□□□□ 0.25
TM9SF3-204ENST00000475401 MKRN4PQ13434 485 aaPredicted RBP16.61■□□□□ 0.25
TM9SF3-204ENST00000475401 SPDYE4A6NLX3 237 aa16.45■□□□□ 0.22
TM9SF3-204ENST00000475401 OSCARQ8IYS5 282 aa16.38■□□□□ 0.21
TM9SF3-204ENST00000475401 SPDYE2BA6NHP3 402 aa16.32■□□□□ 0.2
TM9SF3-204ENST00000475401 SPDYE6P0CI01 402 aa16.32■□□□□ 0.2
TM9SF3-204ENST00000475401 SPDYE2Q495Y8 402 aa16.32■□□□□ 0.2
TM9SF3-204ENST00000475401 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
TM9SF3-204ENST00000475401 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
TM9SF3-204ENST00000475401 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
TM9SF3-204ENST00000475401 PROM2Q8N271 834 aa16.09■□□□□ 0.17
TM9SF3-204ENST00000475401 FBXO3Q9UK99 471 aa16.08■□□□□ 0.16
TM9SF3-204ENST00000475401 PABPN1Q86U42 306 aaKnown RBP eCLIP16.05■□□□□ 0.16
TM9SF3-204ENST00000475401 AKT1S1Q96B36 256 aa16■□□□□ 0.15
TM9SF3-204ENST00000475401 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
TM9SF3-204ENST00000475401 SPDYE1Q8NFV5 336 aaPredicted RBP15.82■□□□□ 0.12
TM9SF3-204ENST00000475401 REM2Q8IYK8 340 aaPredicted RBP15.8■□□□□ 0.12
TM9SF3-204ENST00000475401 VASPP50552 380 aaPredicted RBP15.76■□□□□ 0.11
TM9SF3-204ENST00000475401 CLEC11AQ9Y240 323 aa15.74■□□□□ 0.11
TM9SF3-204ENST00000475401 PLEKHG5O94827 1062 aa15.66■□□□□ 0.1
TM9SF3-204ENST00000475401 PLCD3Q8N3E9 789 aa15.65■□□□□ 0.1
TM9SF3-204ENST00000475401 PRR29P0C7W0 189 aa15.63■□□□□ 0.09
TM9SF3-204ENST00000475401 MIER1Q8N108 512 aa15.62■□□□□ 0.09
TM9SF3-204ENST00000475401 PITPNM1O00562 1244 aa15.6■□□□□ 0.09
TM9SF3-204ENST00000475401 KLHL34Q8N239 644 aa15.55■□□□□ 0.08
TM9SF3-204ENST00000475401 ZBTB47Q9UFB7 747 aaPredicted RBP15.51■□□□□ 0.07
TM9SF3-204ENST00000475401 AMER1Q5JTC6 1135 aaPredicted RBP15.5■□□□□ 0.07
TM9SF3-204ENST00000475401 IFNLR1Q8IU57 520 aaPredicted RBP15.49■□□□□ 0.07
TM9SF3-204ENST00000475401 CHRDL2Q6WN34 429 aa15.4■□□□□ 0.06
TM9SF3-204ENST00000475401 SPOCK2Q92563 424 aa15.38■□□□□ 0.05
TM9SF3-204ENST00000475401 CREBZFQ9NS37 354 aa15.36■□□□□ 0.05
TM9SF3-204ENST00000475401 RTN4Q9NQC3 1192 aaKnown RBP15.34■□□□□ 0.05
TM9SF3-204ENST00000475401 FXR2P51116 673 aaKnown RBP eCLIP15.27■□□□□ 0.04
TM9SF3-204ENST00000475401 NPM1P06748 294 aaKnown RBP eCLIP15.25■□□□□ 0.03
TM9SF3-204ENST00000475401 PRKAR2AP13861 404 aaKnown RBP15.25■□□□□ 0.03
TM9SF3-204ENST00000475401 CHADLQ6NUI6 762 aa15.24■□□□□ 0.03
TM9SF3-204ENST00000475401 PIP4P2Q8N4L2 257 aa15.2■□□□□ 0.02
TM9SF3-204ENST00000475401 MNX1P50219 401 aaPredicted RBP15.17■□□□□ 0.02
TM9SF3-204ENST00000475401 FARP1Q9Y4F1 1045 aaPredicted RBP15.16■□□□□ 0.02
TM9SF3-204ENST00000475401 CIZ1Q9ULV3 898 aaPredicted RBP15.14■□□□□ 0.01
TM9SF3-204ENST00000475401 GSE1Q14687 1217 aa15.1■□□□□ 0.01
TM9SF3-204ENST00000475401 FAM212AQ96EL1 285 aa15.1■□□□□ 0.01
TM9SF3-204ENST00000475401 NUBP1P53384 320 aa15.09■□□□□ 0.01
TM9SF3-204ENST00000475401 DCAF8Q5TAQ9 597 aa15.08■□□□□ 0
TM9SF3-204ENST00000475401 PKD2Q13563 968 aa15.02■□□□□ -0
TM9SF3-204ENST00000475401 TRIM41Q8WV44 630 aa15.02■□□□□ -0
TM9SF3-204ENST00000475401 ECM2O94769 699 aaPredicted RBP15.01□□□□□ -0.01
TM9SF3-204ENST00000475401 RASEFQ8IZ41 740 aa15□□□□□ -0.01
TM9SF3-204ENST00000475401 PAK3O75914 559 aaPredicted RBP14.99□□□□□ -0.01
TM9SF3-204ENST00000475401 TSPYL2Q9H2G4 693 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms