RNA–Protein interactions for RNA: ENST00000474272.1

TMEM50B-208, Transcript of transmembrane protein 50B, humanhuman

TSL 3

Gene TMEM50B, Length 518 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM50B-208ENST00000474272 AEBP2Q6ZN18 517 aaPredicted RBP26.07■■□□□ 1.76
TMEM50B-208ENST00000474272 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
TMEM50B-208ENST00000474272 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
TMEM50B-208ENST00000474272 PHF23Q9BUL5 403 aaPredicted RBP21.92■■□□□ 1.1
TMEM50B-208ENST00000474272 FOXD1Q16676 465 aa20.69■□□□□ 0.9
TMEM50B-208ENST00000474272 PLPPR3Q6T4P5 718 aa19.8■□□□□ 0.76
TMEM50B-208ENST00000474272 PPP6R1Q9UPN7 881 aa19.48■□□□□ 0.71
TMEM50B-208ENST00000474272 ADRA2BP18089 450 aa19.42■□□□□ 0.7
TMEM50B-208ENST00000474272 PIAS4Q8N2W9 510 aaPredicted RBP19.33■□□□□ 0.68
TMEM50B-208ENST00000474272 MSH5O43196 834 aa19.2■□□□□ 0.66
TMEM50B-208ENST00000474272 POTEDQ86YR6 584 aa18.68■□□□□ 0.58
TMEM50B-208ENST00000474272 MAPK8IP2Q13387 824 aaPredicted RBP17.84■□□□□ 0.45
TMEM50B-208ENST00000474272 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
TMEM50B-208ENST00000474272 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
TMEM50B-208ENST00000474272 PPP4R3CPQ6ZMV5 832 aa17.43■□□□□ 0.38
TMEM50B-208ENST00000474272 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
TMEM50B-208ENST00000474272 DCAF8L1A6NGE4 600 aa16.95■□□□□ 0.3
TMEM50B-208ENST00000474272 HOXD11P31277 338 aaPredicted RBP16.93■□□□□ 0.3
TMEM50B-208ENST00000474272 RNF216Q9NWF9 866 aaPredicted RBP16.83■□□□□ 0.28
TMEM50B-208ENST00000474272 NCBP3Q53F19 620 aaKnown RBP16.71■□□□□ 0.27
TMEM50B-208ENST00000474272 NPM3O75607 178 aaKnown RBP16.55■□□□□ 0.24
TMEM50B-208ENST00000474272 CACNB1Q02641 598 aaPredicted RBP16.51■□□□□ 0.23
TMEM50B-208ENST00000474272 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
TMEM50B-208ENST00000474272 KCNA4P22459 653 aa16.37■□□□□ 0.21
TMEM50B-208ENST00000474272 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.2■□□□□ 0.18
TMEM50B-208ENST00000474272 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
TMEM50B-208ENST00000474272 C1QBPQ07021 282 aaKnown RBP16.16■□□□□ 0.18
TMEM50B-208ENST00000474272 U3KPZ7 1027 aaPredicted RBP15.87■□□□□ 0.13
TMEM50B-208ENST00000474272 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
TMEM50B-208ENST00000474272 SPINK5Q9NQ38 1064 aaPredicted RBP15.67■□□□□ 0.1
TMEM50B-208ENST00000474272 CAPN15O75808 1086 aa15.6■□□□□ 0.09
TMEM50B-208ENST00000474272 DSG3P32926 999 aa15.46■□□□□ 0.07
TMEM50B-208ENST00000474272 SLC4A1APQ9BWU0 796 aaKnown RBP15.43■□□□□ 0.06
TMEM50B-208ENST00000474272 TRHP20396 242 aaPredicted RBP15.4■□□□□ 0.06
TMEM50B-208ENST00000474272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.33■□□□□ 0.04
TMEM50B-208ENST00000474272 HNRNPUL2Q1KMD3 747 aaKnown RBP15.33■□□□□ 0.04
TMEM50B-208ENST00000474272 ABCB7O75027 752 aa15.3■□□□□ 0.04
TMEM50B-208ENST00000474272 APLP2Q06481 763 aa15.28■□□□□ 0.04
TMEM50B-208ENST00000474272 SAMD1Q6SPF0 538 aaPredicted RBP15.28■□□□□ 0.04
TMEM50B-208ENST00000474272 ZNF219Q9P2Y4 722 aaPredicted RBP15.25■□□□□ 0.03
TMEM50B-208ENST00000474272 MYCNP04198 464 aaPredicted RBP15.24■□□□□ 0.03
TMEM50B-208ENST00000474272 FOXD4L1Q9NU39 408 aa15.15■□□□□ 0.02
TMEM50B-208ENST00000474272 ZBTB22O15209 634 aa15.06■□□□□ 0
TMEM50B-208ENST00000474272 ATF5Q9Y2D1 282 aaPredicted RBP15.02■□□□□ -0
TMEM50B-208ENST00000474272 POLA2Q14181 598 aa14.99□□□□□ -0.01
TMEM50B-208ENST00000474272 POTEHQ6S545 545 aa14.65□□□□□ -0.06
TMEM50B-208ENST00000474272 RBM42Q9BTD8 480 aaKnown RBP14.65□□□□□ -0.06
TMEM50B-208ENST00000474272 ATXN8OSP0DMR3 200 aa14.61□□□□□ -0.07
TMEM50B-208ENST00000474272 ZBTB12Q9Y330 459 aaPredicted RBP14.55□□□□□ -0.08
TMEM50B-208ENST00000474272 OSCARQ8IYS5 282 aa14.51□□□□□ -0.09
TMEM50B-208ENST00000474272 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
TMEM50B-208ENST00000474272 CHRDL2Q6WN34 429 aa14.38□□□□□ -0.11
TMEM50B-208ENST00000474272 AKT1S1Q96B36 256 aa14.37□□□□□ -0.11
TMEM50B-208ENST00000474272 EHMT2Q96KQ7 1210 aa14.37□□□□□ -0.11
TMEM50B-208ENST00000474272 REM2Q8IYK8 340 aaPredicted RBP14.31□□□□□ -0.12
TMEM50B-208ENST00000474272 FBLN2P98095 1184 aa14.3□□□□□ -0.12
TMEM50B-208ENST00000474272 MKRN4PQ13434 485 aaPredicted RBP14.29□□□□□ -0.12
TMEM50B-208ENST00000474272 PITPNM1O00562 1244 aa14.16□□□□□ -0.14
TMEM50B-208ENST00000474272 SPDYE2BA6NHP3 402 aa14.15□□□□□ -0.14
TMEM50B-208ENST00000474272 SPDYE6P0CI01 402 aa14.15□□□□□ -0.14
TMEM50B-208ENST00000474272 SPDYE2Q495Y8 402 aa14.15□□□□□ -0.14
TMEM50B-208ENST00000474272 PIP4P2Q8N4L2 257 aa14.08□□□□□ -0.16
TMEM50B-208ENST00000474272 ZNF692Q9BU19 519 aaPredicted RBP14.07□□□□□ -0.16
TMEM50B-208ENST00000474272 SSUH2Q9Y2M2 353 aa13.99□□□□□ -0.17
TMEM50B-208ENST00000474272 FXR2P51116 673 aaKnown RBP eCLIP13.98□□□□□ -0.17
TMEM50B-208ENST00000474272 CLEC11AQ9Y240 323 aa13.97□□□□□ -0.17
TMEM50B-208ENST00000474272 SPDYE1Q8NFV5 336 aaPredicted RBP13.9□□□□□ -0.18
TMEM50B-208ENST00000474272 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
TMEM50B-208ENST00000474272 HAX1O00165 279 aa13.83□□□□□ -0.2
TMEM50B-208ENST00000474272 PRKAR2AP13861 404 aaKnown RBP13.8□□□□□ -0.2
TMEM50B-208ENST00000474272 SP7Q8TDD2 431 aaPredicted RBP13.75□□□□□ -0.21
TMEM50B-208ENST00000474272 CHADLQ6NUI6 762 aa13.73□□□□□ -0.21
TMEM50B-208ENST00000474272 EVX2Q03828 476 aa13.72□□□□□ -0.21
TMEM50B-208ENST00000474272 PRR29P0C7W0 189 aa13.7□□□□□ -0.22
TMEM50B-208ENST00000474272 SPDYE4A6NLX3 237 aa13.64□□□□□ -0.23
TMEM50B-208ENST00000474272 C19orf67A6NJJ6 358 aa13.52□□□□□ -0.25
TMEM50B-208ENST00000474272 FARP1Q9Y4F1 1045 aaPredicted RBP13.45□□□□□ -0.26
TMEM50B-208ENST00000474272 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
TMEM50B-208ENST00000474272 CREBZFQ9NS37 354 aa13.4□□□□□ -0.26
TMEM50B-208ENST00000474272 CD44P16070 742 aaKnown RBP13.35□□□□□ -0.27
TMEM50B-208ENST00000474272 GABBR2O75899 941 aa13.34□□□□□ -0.27
TMEM50B-208ENST00000474272 PROM2Q8N271 834 aa13.25□□□□□ -0.29
TMEM50B-208ENST00000474272 ZRANB1Q9UGI0 708 aa13.2□□□□□ -0.3
TMEM50B-208ENST00000474272 MNX1P50219 401 aaPredicted RBP13.17□□□□□ -0.3
TMEM50B-208ENST00000474272 FKBP8Q14318 412 aa13.1□□□□□ -0.31
TMEM50B-208ENST00000474272 NPM1P06748 294 aaKnown RBP eCLIP13.09□□□□□ -0.31
TMEM50B-208ENST00000474272 POTEIP0CG38 1075 aa13.09□□□□□ -0.31
TMEM50B-208ENST00000474272 ZNF579Q8NAF0 562 aaKnown RBP13.09□□□□□ -0.31
TMEM50B-208ENST00000474272 PHF12Q96QT6 1004 aa13.06□□□□□ -0.32
TMEM50B-208ENST00000474272 GALR2O43603 387 aaPredicted RBP13.03□□□□□ -0.32
TMEM50B-208ENST00000474272 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
TMEM50B-208ENST00000474272 MIER1Q8N108 512 aa13.03□□□□□ -0.32
TMEM50B-208ENST00000474272 CLCN6P51797 869 aa12.98□□□□□ -0.33
TMEM50B-208ENST00000474272 DCBLD2Q96PD2 775 aa12.98□□□□□ -0.33
TMEM50B-208ENST00000474272 TSPYL2Q9H2G4 693 aaPredicted RBP12.98□□□□□ -0.33
TMEM50B-208ENST00000474272 LHX8Q68G74 356 aa12.93□□□□□ -0.34
TMEM50B-208ENST00000474272 PLCD3Q8N3E9 789 aa12.92□□□□□ -0.34
TMEM50B-208ENST00000474272 PLEKHG5O94827 1062 aa12.9□□□□□ -0.34
TMEM50B-208ENST00000474272 MS4A3Q96HJ5 214 aa12.86□□□□□ -0.35
TMEM50B-208ENST00000474272 RASEFQ8IZ41 740 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms