RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 AEBP2Q6ZN18 517 aaPredicted RBP24.89■■□□□ 1.58
RTF1-203ENST00000473214 CHIC1Q5VXU3 224 aa23.32■■□□□ 1.32
RTF1-203ENST00000473214 SENP3Q9H4L4 574 aaPredicted RBP21.25■□□□□ 0.99
RTF1-203ENST00000473214 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
RTF1-203ENST00000473214 FOXD1Q16676 465 aa19.87■□□□□ 0.77
RTF1-203ENST00000473214 POTEDQ86YR6 584 aa18.78■□□□□ 0.6
RTF1-203ENST00000473214 MSH5O43196 834 aa18.68■□□□□ 0.58
RTF1-203ENST00000473214 PLPPR3Q6T4P5 718 aa18.48■□□□□ 0.55
RTF1-203ENST00000473214 PIAS4Q8N2W9 510 aaPredicted RBP18.47■□□□□ 0.55
RTF1-203ENST00000473214 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
RTF1-203ENST00000473214 ADRA2BP18089 450 aa18.27■□□□□ 0.52
RTF1-203ENST00000473214 MAPK8IP2Q13387 824 aaPredicted RBP16.89■□□□□ 0.29
RTF1-203ENST00000473214 DMRT2Q9Y5R5 561 aa16.8■□□□□ 0.28
RTF1-203ENST00000473214 SCAF1Q9H7N4 1312 aaKnown RBP16.7■□□□□ 0.26
RTF1-203ENST00000473214 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
RTF1-203ENST00000473214 PPP4R3CPQ6ZMV5 832 aa16.17■□□□□ 0.18
RTF1-203ENST00000473214 DCAF8L1A6NGE4 600 aa16.13■□□□□ 0.17
RTF1-203ENST00000473214 HOXD11P31277 338 aaPredicted RBP16.08■□□□□ 0.16
RTF1-203ENST00000473214 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
RTF1-203ENST00000473214 CNKSR2Q8WXI2 1034 aa15.93■□□□□ 0.14
RTF1-203ENST00000473214 RNF216Q9NWF9 866 aaPredicted RBP15.87■□□□□ 0.13
RTF1-203ENST00000473214 C1QBPQ07021 282 aaKnown RBP15.67■□□□□ 0.1
RTF1-203ENST00000473214 DNAJC5BQ9UF47 199 aa15.58■□□□□ 0.08
RTF1-203ENST00000473214 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
RTF1-203ENST00000473214 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.3■□□□□ 0.043e-10■■■■□ 26.4
RTF1-203ENST00000473214 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
RTF1-203ENST00000473214 U3KPZ7 1027 aaPredicted RBP14.96□□□□□ -0.01
RTF1-203ENST00000473214 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
RTF1-203ENST00000473214 CAPN15O75808 1086 aa14.82□□□□□ -0.04
RTF1-203ENST00000473214 KCNA4P22459 653 aa14.82□□□□□ -0.04
RTF1-203ENST00000473214 DSG3P32926 999 aa14.82□□□□□ -0.04
RTF1-203ENST00000473214 POTEHQ6S545 545 aa14.65□□□□□ -0.06
RTF1-203ENST00000473214 SLC4A2P04920 1241 aa14.64□□□□□ -0.07
RTF1-203ENST00000473214 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.09
RTF1-203ENST00000473214 APLP2Q06481 763 aa14.47□□□□□ -0.09
RTF1-203ENST00000473214 ZNF219Q9P2Y4 722 aaPredicted RBP14.46□□□□□ -0.09
RTF1-203ENST00000473214 ABCB7O75027 752 aa14.45□□□□□ -0.1
RTF1-203ENST00000473214 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.41□□□□□ -0.1
RTF1-203ENST00000473214 HNRNPUL2Q1KMD3 747 aaKnown RBP14.41□□□□□ -0.1
RTF1-203ENST00000473214 SAMD1Q6SPF0 538 aaPredicted RBP14.31□□□□□ -0.12
RTF1-203ENST00000473214 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
RTF1-203ENST00000473214 MYCNP04198 464 aaPredicted RBP14.07□□□□□ -0.16
RTF1-203ENST00000473214 POLA2Q14181 598 aa14.06□□□□□ -0.16
RTF1-203ENST00000473214 CHRDL2Q6WN34 429 aa13.95□□□□□ -0.18
RTF1-203ENST00000473214 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
RTF1-203ENST00000473214 FOXD4L1Q9NU39 408 aa13.85□□□□□ -0.19
RTF1-203ENST00000473214 ATF5Q9Y2D1 282 aaPredicted RBP13.82□□□□□ -0.2
RTF1-203ENST00000473214 AKT1S1Q96B36 256 aa13.74□□□□□ -0.21
RTF1-203ENST00000473214 ZBTB12Q9Y330 459 aaPredicted RBP13.71□□□□□ -0.21
RTF1-203ENST00000473214 ZBTB22O15209 634 aa13.64□□□□□ -0.23
RTF1-203ENST00000473214 REM2Q8IYK8 340 aaPredicted RBP13.63□□□□□ -0.23
RTF1-203ENST00000473214 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
RTF1-203ENST00000473214 SP7Q8TDD2 431 aaPredicted RBP13.59□□□□□ -0.23
RTF1-203ENST00000473214 PIP4P2Q8N4L2 257 aa13.56□□□□□ -0.24
RTF1-203ENST00000473214 PITPNM1O00562 1244 aa13.48□□□□□ -0.25
RTF1-203ENST00000473214 ATXN8OSP0DMR3 200 aa13.47□□□□□ -0.25
RTF1-203ENST00000473214 FXR2P51116 673 aaKnown RBP eCLIP13.43□□□□□ -0.26
RTF1-203ENST00000473214 HAX1O00165 279 aa13.4□□□□□ -0.26
RTF1-203ENST00000473214 SPDYE2BA6NHP3 402 aa13.28□□□□□ -0.28
RTF1-203ENST00000473214 SPDYE6P0CI01 402 aa13.28□□□□□ -0.28
RTF1-203ENST00000473214 SPDYE2Q495Y8 402 aa13.28□□□□□ -0.28
RTF1-203ENST00000473214 FBLN2P98095 1184 aa13.26□□□□□ -0.29
RTF1-203ENST00000473214 EVX2Q03828 476 aa13.24□□□□□ -0.29
RTF1-203ENST00000473214 MKRN4PQ13434 485 aaPredicted RBP13.15□□□□□ -0.3
RTF1-203ENST00000473214 SPDYE1Q8NFV5 336 aaPredicted RBP13.13□□□□□ -0.31
RTF1-203ENST00000473214 CLEC11AQ9Y240 323 aa13.13□□□□□ -0.31
RTF1-203ENST00000473214 PRKAR2AP13861 404 aaKnown RBP13.12□□□□□ -0.31
RTF1-203ENST00000473214 ZNF692Q9BU19 519 aaPredicted RBP13.09□□□□□ -0.31
RTF1-203ENST00000473214 SSUH2Q9Y2M2 353 aa13.08□□□□□ -0.32
RTF1-203ENST00000473214 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
RTF1-203ENST00000473214 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
RTF1-203ENST00000473214 CHADLQ6NUI6 762 aa12.92□□□□□ -0.34
RTF1-203ENST00000473214 GABBR2O75899 941 aa12.91□□□□□ -0.34
RTF1-203ENST00000473214 CSRNP3Q8WYN3 585 aa12.91□□□□□ -0.34
RTF1-203ENST00000473214 PABPN1Q86U42 306 aaKnown RBP eCLIP12.88□□□□□ -0.35
RTF1-203ENST00000473214 PRR29P0C7W0 189 aa12.87□□□□□ -0.35
RTF1-203ENST00000473214 LHX8Q68G74 356 aa12.75□□□□□ -0.37
RTF1-203ENST00000473214 FARP1Q9Y4F1 1045 aaPredicted RBP12.7□□□□□ -0.38
RTF1-203ENST00000473214 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
RTF1-203ENST00000473214 EHMT2Q96KQ7 1210 aa12.68□□□□□ -0.38
RTF1-203ENST00000473214 POTEIP0CG38 1075 aa12.64□□□□□ -0.39
RTF1-203ENST00000473214 CLCN6P51797 869 aa12.58□□□□□ -0.4
RTF1-203ENST00000473214 CREBZFQ9NS37 354 aa12.49□□□□□ -0.41
RTF1-203ENST00000473214 ZNF579Q8NAF0 562 aaKnown RBP12.47□□□□□ -0.41
RTF1-203ENST00000473214 DCBLD2Q96PD2 775 aa12.47□□□□□ -0.41
RTF1-203ENST00000473214 ZRANB1Q9UGI0 708 aa12.47□□□□□ -0.41
RTF1-203ENST00000473214 STAG3Q9UJ98 1225 aa12.45□□□□□ -0.42
RTF1-203ENST00000473214 SPDYE4A6NLX3 237 aa12.43□□□□□ -0.42
RTF1-203ENST00000473214 GALR2O43603 387 aaPredicted RBP12.36□□□□□ -0.43
RTF1-203ENST00000473214 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
RTF1-203ENST00000473214 PHF12Q96QT6 1004 aa12.27□□□□□ -0.45
RTF1-203ENST00000473214 MNX1P50219 401 aaPredicted RBP12.24□□□□□ -0.45
RTF1-203ENST00000473214 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
RTF1-203ENST00000473214 OTUD5Q96G74 571 aa12.23□□□□□ -0.45
RTF1-203ENST00000473214 POTEB2H3BUK9 544 aa12.22□□□□□ -0.45
RTF1-203ENST00000473214 PELP1Q8IZL8 1130 aaKnown RBP12.17□□□□□ -0.46
RTF1-203ENST00000473214 PROM2Q8N271 834 aa12.17□□□□□ -0.46
RTF1-203ENST00000473214 PLSCR2Q9NRY7 297 aa12.17□□□□□ -0.46
RTF1-203ENST00000473214 MS4A3Q96HJ5 214 aa12.09□□□□□ -0.47
RTF1-203ENST00000473214 ASTLQ6HA08 431 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms