RNA–Protein interactions for RNA: ENST00000470824.1

PRPF3-204, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 898 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-204ENST00000470824 AEBP2Q6ZN18 517 aaPredicted RBP18.35■□□□□ 0.53
PRPF3-204ENST00000470824 CHIC1Q5VXU3 224 aa17.29■□□□□ 0.36
PRPF3-204ENST00000470824 SENP3Q9H4L4 574 aaPredicted RBP15.7■□□□□ 0.1
PRPF3-204ENST00000470824 PHF23Q9BUL5 403 aaPredicted RBP15.46■□□□□ 0.07
PRPF3-204ENST00000470824 FOXD1Q16676 465 aa14.64□□□□□ -0.07
PRPF3-204ENST00000470824 PLPPR3Q6T4P5 718 aa14.22□□□□□ -0.13
PRPF3-204ENST00000470824 MSH5O43196 834 aa13.76□□□□□ -0.21
PRPF3-204ENST00000470824 PIAS4Q8N2W9 510 aaPredicted RBP13.71□□□□□ -0.21
PRPF3-204ENST00000470824 POTEDQ86YR6 584 aa13.67□□□□□ -0.22
PRPF3-204ENST00000470824 PPP6R1Q9UPN7 881 aa13.57□□□□□ -0.24
PRPF3-204ENST00000470824 ADRA2BP18089 450 aa13.56□□□□□ -0.24
PRPF3-204ENST00000470824 KCNA4P22459 653 aa12.72□□□□□ -0.37
PRPF3-204ENST00000470824 PPP4R3CPQ6ZMV5 832 aa12.57□□□□□ -0.4
PRPF3-204ENST00000470824 MAPK8IP2Q13387 824 aaPredicted RBP12.48□□□□□ -0.41
PRPF3-204ENST00000470824 DMRT2Q9Y5R5 561 aa12.41□□□□□ -0.42
PRPF3-204ENST00000470824 NCBP3Q53F19 620 aaKnown RBP12.4□□□□□ -0.42
PRPF3-204ENST00000470824 SCAF1Q9H7N4 1312 aaKnown RBP12.39□□□□□ -0.43
PRPF3-204ENST00000470824 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
PRPF3-204ENST00000470824 SLC4A1APQ9BWU0 796 aaKnown RBP12.21□□□□□ -0.45
PRPF3-204ENST00000470824 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
PRPF3-204ENST00000470824 CNKSR2Q8WXI2 1034 aa12.14□□□□□ -0.47
PRPF3-204ENST00000470824 DCAF8L1A6NGE4 600 aa12.04□□□□□ -0.48
PRPF3-204ENST00000470824 CSRNP3Q8WYN3 585 aa11.98□□□□□ -0.49
PRPF3-204ENST00000470824 CACNB1Q02641 598 aaPredicted RBP11.94□□□□□ -0.5
PRPF3-204ENST00000470824 HOXD11P31277 338 aaPredicted RBP11.87□□□□□ -0.51
PRPF3-204ENST00000470824 RNF216Q9NWF9 866 aaPredicted RBP11.8□□□□□ -0.52
PRPF3-204ENST00000470824 DNAJC5BQ9UF47 199 aa11.77□□□□□ -0.53
PRPF3-204ENST00000470824 RNF39Q9H2S5 420 aa11.71□□□□□ -0.53
PRPF3-204ENST00000470824 ZBTB22O15209 634 aa11.68□□□□□ -0.54
PRPF3-204ENST00000470824 FOXD4L1Q9NU39 408 aa11.61□□□□□ -0.55
PRPF3-204ENST00000470824 C1QBPQ07021 282 aaKnown RBP11.53□□□□□ -0.56
PRPF3-204ENST00000470824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.585e-7■□□□□ 10.5
PRPF3-204ENST00000470824 SLC4A2P04920 1241 aa11.38□□□□□ -0.59
PRPF3-204ENST00000470824 MYCNP04198 464 aaPredicted RBP11.25□□□□□ -0.61
PRPF3-204ENST00000470824 ATXN8OSP0DMR3 200 aa11.19□□□□□ -0.62
PRPF3-204ENST00000470824 U3KPZ7 1027 aaPredicted RBP11.1□□□□□ -0.63
PRPF3-204ENST00000470824 CAPN15O75808 1086 aa11.04□□□□□ -0.64
PRPF3-204ENST00000470824 SPINK5Q9NQ38 1064 aaPredicted RBP11.01□□□□□ -0.65
PRPF3-204ENST00000470824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11□□□□□ -0.65
PRPF3-204ENST00000470824 HNRNPUL2Q1KMD3 747 aaKnown RBP11□□□□□ -0.65
PRPF3-204ENST00000470824 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
PRPF3-204ENST00000470824 DSG3P32926 999 aa10.93□□□□□ -0.66
PRPF3-204ENST00000470824 ATF5Q9Y2D1 282 aaPredicted RBP10.87□□□□□ -0.67
PRPF3-204ENST00000470824 TRHP20396 242 aaPredicted RBP10.83□□□□□ -0.68
PRPF3-204ENST00000470824 FKBP8Q14318 412 aa10.82□□□□□ -0.68
PRPF3-204ENST00000470824 APLP2Q06481 763 aa10.8□□□□□ -0.68
PRPF3-204ENST00000470824 ABCB7O75027 752 aa10.78□□□□□ -0.68
PRPF3-204ENST00000470824 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
PRPF3-204ENST00000470824 POTEHQ6S545 545 aa10.7□□□□□ -0.7
PRPF3-204ENST00000470824 AMER1Q5JTC6 1135 aaPredicted RBP10.59□□□□□ -0.71
PRPF3-204ENST00000470824 RTN4Q9NQC3 1192 aaKnown RBP10.53□□□□□ -0.72
PRPF3-204ENST00000470824 POLA2Q14181 598 aa10.47□□□□□ -0.73
PRPF3-204ENST00000470824 FBLN2P98095 1184 aa10.46□□□□□ -0.73
PRPF3-204ENST00000470824 RBM42Q9BTD8 480 aaKnown RBP10.46□□□□□ -0.73
PRPF3-204ENST00000470824 MKRN4PQ13434 485 aaPredicted RBP10.44□□□□□ -0.74
PRPF3-204ENST00000470824 SPDYE4A6NLX3 237 aa10.43□□□□□ -0.74
PRPF3-204ENST00000470824 FBXO3Q9UK99 471 aa10.36□□□□□ -0.75
PRPF3-204ENST00000470824 ZBTB12Q9Y330 459 aaPredicted RBP10.33□□□□□ -0.76
PRPF3-204ENST00000470824 CHRDL2Q6WN34 429 aa10.29□□□□□ -0.76
PRPF3-204ENST00000470824 PROM2Q8N271 834 aa10.29□□□□□ -0.76
PRPF3-204ENST00000470824 SLC24A1O60721 1099 aa10.2□□□□□ -0.78
PRPF3-204ENST00000470824 VASPP50552 380 aaPredicted RBP10.17□□□□□ -0.78
PRPF3-204ENST00000470824 OSCARQ8IYS5 282 aa10.17□□□□□ -0.78
PRPF3-204ENST00000470824 AKT1S1Q96B36 256 aa10.16□□□□□ -0.78
PRPF3-204ENST00000470824 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
PRPF3-204ENST00000470824 SPDYE2BA6NHP3 402 aa10.08□□□□□ -0.8
PRPF3-204ENST00000470824 SPDYE6P0CI01 402 aa10.08□□□□□ -0.8
PRPF3-204ENST00000470824 SPDYE2Q495Y8 402 aa10.08□□□□□ -0.8
PRPF3-204ENST00000470824 REM2Q8IYK8 340 aaPredicted RBP10.08□□□□□ -0.8
PRPF3-204ENST00000470824 IFNLR1Q8IU57 520 aaPredicted RBP10.05□□□□□ -0.8
PRPF3-204ENST00000470824 SSUH2Q9Y2M2 353 aa10.01□□□□□ -0.81
PRPF3-204ENST00000470824 PITPNM1O00562 1244 aa10□□□□□ -0.81
PRPF3-204ENST00000470824 PIP4P2Q8N4L2 257 aa10□□□□□ -0.81
PRPF3-204ENST00000470824 STAG3Q9UJ98 1225 aa10□□□□□ -0.81
PRPF3-204ENST00000470824 PABPN1Q86U42 306 aaKnown RBP eCLIP9.97□□□□□ -0.81
PRPF3-204ENST00000470824 SP7Q8TDD2 431 aaPredicted RBP9.96□□□□□ -0.82
PRPF3-204ENST00000470824 KLHL34Q8N239 644 aa9.94□□□□□ -0.82
PRPF3-204ENST00000470824 HAX1O00165 279 aa9.9□□□□□ -0.82
PRPF3-204ENST00000470824 PLCD3Q8N3E9 789 aa9.9□□□□□ -0.82
PRPF3-204ENST00000470824 SPOCK2Q92563 424 aa9.9□□□□□ -0.82
PRPF3-204ENST00000470824 FXR2P51116 673 aaKnown RBP eCLIP9.88□□□□□ -0.83
PRPF3-204ENST00000470824 PKD2Q13563 968 aa9.87□□□□□ -0.83
PRPF3-204ENST00000470824 MIER1Q8N108 512 aa9.87□□□□□ -0.83
PRPF3-204ENST00000470824 DCAF8L2P0C7V8 631 aa9.84□□□□□ -0.83
PRPF3-204ENST00000470824 CLEC11AQ9Y240 323 aa9.83□□□□□ -0.84
PRPF3-204ENST00000470824 PLEKHG5O94827 1062 aa9.81□□□□□ -0.84
PRPF3-204ENST00000470824 SPDYE1Q8NFV5 336 aaPredicted RBP9.78□□□□□ -0.84
PRPF3-204ENST00000470824 ZBTB47Q9UFB7 747 aaPredicted RBP9.78□□□□□ -0.84
PRPF3-204ENST00000470824 ECM2O94769 699 aaPredicted RBP9.76□□□□□ -0.85
PRPF3-204ENST00000470824 PRKAR2AP13861 404 aaKnown RBP9.76□□□□□ -0.85
PRPF3-204ENST00000470824 PLCB2Q00722 1185 aa9.76□□□□□ -0.85
PRPF3-204ENST00000470824 EVX2Q03828 476 aa9.71□□□□□ -0.86
PRPF3-204ENST00000470824 CIZ1Q9ULV3 898 aaPredicted RBP9.68□□□□□ -0.86
PRPF3-204ENST00000470824 HAP1P54257 671 aaPredicted RBP9.63□□□□□ -0.87
PRPF3-204ENST00000470824 CHADLQ6NUI6 762 aa9.63□□□□□ -0.87
PRPF3-204ENST00000470824 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.63□□□□□ -0.87
PRPF3-204ENST00000470824 RGL2O15211 777 aa9.62□□□□□ -0.87
PRPF3-204ENST00000470824 TRIM41Q8WV44 630 aa9.62□□□□□ -0.87
PRPF3-204ENST00000470824 BBXQ8WY36 941 aaPredicted RBP9.62□□□□□ -0.87
PRPF3-204ENST00000470824 PRR29P0C7W0 189 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms