RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 AEBP2Q6ZN18 517 aaPredicted RBP26.19■■□□□ 1.78
PTCD3-208ENST00000469585 CHIC1Q5VXU3 224 aa25.85■■□□□ 1.73
PTCD3-208ENST00000469585 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
PTCD3-208ENST00000469585 SENP3Q9H4L4 574 aaPredicted RBP22.12■■□□□ 1.13
PTCD3-208ENST00000469585 PLPPR3Q6T4P5 718 aa21.09■□□□□ 0.97
PTCD3-208ENST00000469585 FOXD1Q16676 465 aa20.53■□□□□ 0.88
PTCD3-208ENST00000469585 PPP6R1Q9UPN7 881 aa20.01■□□□□ 0.79
PTCD3-208ENST00000469585 ADRA2BP18089 450 aa19.98■□□□□ 0.79
PTCD3-208ENST00000469585 PIAS4Q8N2W9 510 aaPredicted RBP19.39■□□□□ 0.69
PTCD3-208ENST00000469585 MSH5O43196 834 aa18.78■□□□□ 0.6
PTCD3-208ENST00000469585 PPP4R3CPQ6ZMV5 832 aa18.64■□□□□ 0.57
PTCD3-208ENST00000469585 KCNA4P22459 653 aa18.55■□□□□ 0.56
PTCD3-208ENST00000469585 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
PTCD3-208ENST00000469585 NCBP3Q53F19 620 aaKnown RBP18.19■□□□□ 0.5
PTCD3-208ENST00000469585 MAPK8IP2Q13387 824 aaPredicted RBP18.04■□□□□ 0.48
PTCD3-208ENST00000469585 CNKSR2Q8WXI2 1034 aa18.04■□□□□ 0.48
PTCD3-208ENST00000469585 NPM3O75607 178 aaKnown RBP17.98■□□□□ 0.47
PTCD3-208ENST00000469585 DMRT2Q9Y5R5 561 aa17.73■□□□□ 0.43
PTCD3-208ENST00000469585 SLC4A1APQ9BWU0 796 aaKnown RBP17.69■□□□□ 0.42
PTCD3-208ENST00000469585 RNF216Q9NWF9 866 aaPredicted RBP17.62■□□□□ 0.41
PTCD3-208ENST00000469585 HOXD11P31277 338 aaPredicted RBP17.5■□□□□ 0.39
PTCD3-208ENST00000469585 EHMT2Q96KQ7 1210 aa17.5■□□□□ 0.39
PTCD3-208ENST00000469585 DNAJC5BQ9UF47 199 aa17.47■□□□□ 0.39
PTCD3-208ENST00000469585 POTEDQ86YR6 584 aa17.39■□□□□ 0.37
PTCD3-208ENST00000469585 CSRNP3Q8WYN3 585 aa17.23■□□□□ 0.35
PTCD3-208ENST00000469585 ZBTB22O15209 634 aa17.11■□□□□ 0.33
PTCD3-208ENST00000469585 FOXD4L1Q9NU39 408 aa16.97■□□□□ 0.31
PTCD3-208ENST00000469585 SLC4A2P04920 1241 aa16.93■□□□□ 0.3
PTCD3-208ENST00000469585 DCAF8L1A6NGE4 600 aa16.86■□□□□ 0.29
PTCD3-208ENST00000469585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.255e-7■□□□□ 10.8
PTCD3-208ENST00000469585 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
PTCD3-208ENST00000469585 U3KPZ7 1027 aaPredicted RBP16.42■□□□□ 0.22
PTCD3-208ENST00000469585 ATXN8OSP0DMR3 200 aa16.36■□□□□ 0.21
PTCD3-208ENST00000469585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
PTCD3-208ENST00000469585 HNRNPUL2Q1KMD3 747 aaKnown RBP16.26■□□□□ 0.19
PTCD3-208ENST00000469585 SAMD1Q6SPF0 538 aaPredicted RBP16.24■□□□□ 0.19
PTCD3-208ENST00000469585 ATF5Q9Y2D1 282 aaPredicted RBP16.16■□□□□ 0.18
PTCD3-208ENST00000469585 RNF39Q9H2S5 420 aa16.15■□□□□ 0.18
PTCD3-208ENST00000469585 APLP2Q06481 763 aa16■□□□□ 0.15
PTCD3-208ENST00000469585 C1QBPQ07021 282 aaKnown RBP15.95■□□□□ 0.14
PTCD3-208ENST00000469585 SPINK5Q9NQ38 1064 aaPredicted RBP15.87■□□□□ 0.13
PTCD3-208ENST00000469585 ZNF219Q9P2Y4 722 aaPredicted RBP15.84■□□□□ 0.13
PTCD3-208ENST00000469585 CAPN15O75808 1086 aa15.74■□□□□ 0.11
PTCD3-208ENST00000469585 TRHP20396 242 aaPredicted RBP15.74■□□□□ 0.11
PTCD3-208ENST00000469585 POLA2Q14181 598 aa15.58■□□□□ 0.08
PTCD3-208ENST00000469585 FKBP8Q14318 412 aa15.51■□□□□ 0.07
PTCD3-208ENST00000469585 ABCB7O75027 752 aa15.5■□□□□ 0.07
PTCD3-208ENST00000469585 MKRN4PQ13434 485 aaPredicted RBP15.48■□□□□ 0.07
PTCD3-208ENST00000469585 DSG3P32926 999 aa15.46■□□□□ 0.07
PTCD3-208ENST00000469585 CACNB1Q02641 598 aaPredicted RBP15.46■□□□□ 0.07
PTCD3-208ENST00000469585 FBLN2P98095 1184 aa15.38■□□□□ 0.05
PTCD3-208ENST00000469585 ZBTB12Q9Y330 459 aaPredicted RBP15.33■□□□□ 0.04
PTCD3-208ENST00000469585 SPDYE4A6NLX3 237 aa15.22■□□□□ 0.03
PTCD3-208ENST00000469585 PROM2Q8N271 834 aa15.09■□□□□ 0.01
PTCD3-208ENST00000469585 OSCARQ8IYS5 282 aa15.04■□□□□ -0
PTCD3-208ENST00000469585 SPDYE2BA6NHP3 402 aa14.97□□□□□ -0.01
PTCD3-208ENST00000469585 SPDYE6P0CI01 402 aa14.97□□□□□ -0.01
PTCD3-208ENST00000469585 SPDYE2Q495Y8 402 aa14.97□□□□□ -0.01
PTCD3-208ENST00000469585 ZNF692Q9BU19 519 aaPredicted RBP14.93□□□□□ -0.02
PTCD3-208ENST00000469585 SSUH2Q9Y2M2 353 aa14.92□□□□□ -0.02
PTCD3-208ENST00000469585 FBXO3Q9UK99 471 aa14.87□□□□□ -0.03
PTCD3-208ENST00000469585 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
PTCD3-208ENST00000469585 VASPP50552 380 aaPredicted RBP14.69□□□□□ -0.06
PTCD3-208ENST00000469585 RBM42Q9BTD8 480 aaKnown RBP14.68□□□□□ -0.06
PTCD3-208ENST00000469585 AMER1Q5JTC6 1135 aaPredicted RBP14.65□□□□□ -0.06
PTCD3-208ENST00000469585 RTN4Q9NQC3 1192 aaKnown RBP14.65□□□□□ -0.06
PTCD3-208ENST00000469585 AKT1S1Q96B36 256 aa14.59□□□□□ -0.07
PTCD3-208ENST00000469585 STAG3Q9UJ98 1225 aa14.58□□□□□ -0.08
PTCD3-208ENST00000469585 IFNLR1Q8IU57 520 aaPredicted RBP14.53□□□□□ -0.08
PTCD3-208ENST00000469585 REM2Q8IYK8 340 aaPredicted RBP14.46□□□□□ -0.09
PTCD3-208ENST00000469585 SPDYE1Q8NFV5 336 aaPredicted RBP14.44□□□□□ -0.1
PTCD3-208ENST00000469585 PLCD3Q8N3E9 789 aa14.39□□□□□ -0.11
PTCD3-208ENST00000469585 MIER1Q8N108 512 aa14.38□□□□□ -0.11
PTCD3-208ENST00000469585 NISCHQ9Y2I1 1504 aa14.37□□□□□ -0.11
PTCD3-208ENST00000469585 CLEC11AQ9Y240 323 aa14.33□□□□□ -0.12
PTCD3-208ENST00000469585 KLHL34Q8N239 644 aa14.31□□□□□ -0.12
PTCD3-208ENST00000469585 PITPNM1O00562 1244 aa14.29□□□□□ -0.12
PTCD3-208ENST00000469585 SPOCK2Q92563 424 aa14.27□□□□□ -0.13
PTCD3-208ENST00000469585 PRR29P0C7W0 189 aa14.25□□□□□ -0.13
PTCD3-208ENST00000469585 PLEKHG5O94827 1062 aa14.24□□□□□ -0.13
PTCD3-208ENST00000469585 ZBTB47Q9UFB7 747 aaPredicted RBP14.21□□□□□ -0.13
PTCD3-208ENST00000469585 CREBZFQ9NS37 354 aa14.2□□□□□ -0.14
PTCD3-208ENST00000469585 PKD2Q13563 968 aa14.16□□□□□ -0.14
PTCD3-208ENST00000469585 MNX1P50219 401 aaPredicted RBP14.12□□□□□ -0.15
PTCD3-208ENST00000469585 NUBP1P53384 320 aa14.04□□□□□ -0.16
PTCD3-208ENST00000469585 CHADLQ6NUI6 762 aa13.99□□□□□ -0.17
PTCD3-208ENST00000469585 FXR2P51116 673 aaKnown RBP eCLIP13.98□□□□□ -0.17
PTCD3-208ENST00000469585 ECM2O94769 699 aaPredicted RBP13.97□□□□□ -0.17
PTCD3-208ENST00000469585 CHRDL2Q6WN34 429 aa13.97□□□□□ -0.17
PTCD3-208ENST00000469585 CIZ1Q9ULV3 898 aaPredicted RBP13.97□□□□□ -0.17
PTCD3-208ENST00000469585 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTCD3-208ENST00000469585 PRKAR2AP13861 404 aaKnown RBP13.91□□□□□ -0.18
PTCD3-208ENST00000469585 GSE1Q14687 1217 aa13.91□□□□□ -0.18
PTCD3-208ENST00000469585 RASEFQ8IZ41 740 aa13.89□□□□□ -0.19
PTCD3-208ENST00000469585 FARP1Q9Y4F1 1045 aaPredicted RBP13.89□□□□□ -0.19
PTCD3-208ENST00000469585 PIP4P2Q8N4L2 257 aa13.88□□□□□ -0.19
PTCD3-208ENST00000469585 TRIM41Q8WV44 630 aa13.88□□□□□ -0.19
PTCD3-208ENST00000469585 DCAF8Q5TAQ9 597 aa13.87□□□□□ -0.19
PTCD3-208ENST00000469585 RGL2O15211 777 aa13.86□□□□□ -0.19
PTCD3-208ENST00000469585 FAM212AQ96EL1 285 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms