RNA–Protein interactions for RNA: ENST00000467468.5

SMC4-208, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-208ENST00000467468 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.62□□□□□ -1.834e-98■■■■■ 943.1
SMC4-208ENST00000467468 PABPC4Q13310 644 aaKnown RBP eCLIP5.76□□□□□ -1.498e-9■■■■■ 603.5
SMC4-208ENST00000467468 RPS11P62280 158 aaKnown RBP eCLIP2.27□□□□□ -2.058e-17■■■■■ 578.9
SMC4-208ENST00000467468 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.37□□□□□ -1.712e-144■■■■■ 553.7
SMC4-208ENST00000467468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.56□□□□□ -1.22e-6■■■■■ 539.2
SMC4-208ENST00000467468 DDX3XO00571 662 aaKnown RBP eCLIP5.63□□□□□ -1.514e-78■■■■■ 527.9
SMC4-208ENST00000467468 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.3□□□□□ -0.921e-6■■■■■ 406.9
SMC4-208ENST00000467468 YWHAGP61981 247 aaKnown RBP eCLIP3.04□□□□□ -1.921e-117■■■■■ 400.8
SMC4-208ENST00000467468 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.86□□□□□ -1.795e-13■■■■■ 348.1
SMC4-208ENST00000467468 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.37□□□□□ -1.711e-147■■■■■ 345.5
SMC4-208ENST00000467468 RPS3P23396 243 aaKnown RBP eCLIP1.57□□□□□ -2.167e-64■■■■■ 337.8
SMC4-208ENST00000467468 SF3B1O75533 1304 aaKnown RBP eCLIP3.55□□□□□ -1.847e-33■■■■■ 320.9
SMC4-208ENST00000467468 AGGF1Q8N302 714 aaeCLIP6.89□□□□□ -1.312e-85■■■■■ 286.7
SMC4-208ENST00000467468 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.4□□□□□ -2.035e-47■■■■■ 274.1
SMC4-208ENST00000467468 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.52□□□□□ -2.011e-8■■■■■ 268.2
SMC4-208ENST00000467468 AARSP49588 968 aaKnown RBP eCLIP4.73□□□□□ -1.653e-49■■■■■ 252.4
SMC4-208ENST00000467468 LSM11P83369 360 aaKnown RBP eCLIP9.52□□□□□ -0.897e-97■■■■■ 245.7
SMC4-208ENST00000467468 QKIQ96PU8 341 aaKnown RBP eCLIP2.59□□□□□ -1.996e-7■■■■■ 232.7
SMC4-208ENST00000467468 RBM15Q96T37 977 aaKnown RBP eCLIP5.47□□□□□ -1.535e-67■■■■■ 212.6
SMC4-208ENST00000467468 SF3A3Q12874 501 aaKnown RBP eCLIP4.65□□□□□ -1.674e-10■■■■■ 210.9
SMC4-208ENST00000467468 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.92□□□□□ -1.142e-41■■■■■ 207.1
SMC4-208ENST00000467468 DDX21Q9NR30 783 aaKnown RBP eCLIP5.29□□□□□ -1.561e-26■■■■■ 198.7
SMC4-208ENST00000467468 GTF2F1P35269 517 aaKnown RBP eCLIP6.26□□□□□ -1.418e-49■■■■■ 172.1
SMC4-208ENST00000467468 AQRO60306 1485 aaKnown RBP eCLIP2.83□□□□□ -1.962e-8■■■■■ 155.3
SMC4-208ENST00000467468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.39□□□□□ -1.716e-65■■■■■ 143.5
SMC4-208ENST00000467468 AKAP1Q92667 903 aaKnown RBP eCLIP4.47□□□□□ -1.694e-24■■■■■ 140.6
SMC4-208ENST00000467468 G3BP1Q13283 466 aaKnown RBP eCLIP4.79□□□□□ -1.641e-39■■■■■ 140
SMC4-208ENST00000467468 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.91□□□□□ -1.627e-44■■■■■ 137.4
SMC4-208ENST00000467468 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.55□□□□□ -1.524e-34■■■■■ 131.8
SMC4-208ENST00000467468 HLTFQ14527 1009 aaKnown RBP eCLIP5.48□□□□□ -1.535e-35■■■■■ 127.1
SMC4-208ENST00000467468 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.21□□□□□ -1.422e-9■■■■■ 123.9
SMC4-208ENST00000467468 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.27□□□□□ -1.574e-9■■■■■ 118.1
SMC4-208ENST00000467468 AATFQ9NY61 560 aaKnown RBP eCLIP3.63□□□□□ -1.834e-8■■■■■ 116
SMC4-208ENST00000467468 ZC3H11AO75152 810 aaKnown RBP eCLIP4.3□□□□□ -1.724e-12■■■■■ 110
SMC4-208ENST00000467468 NONOQ15233 471 aaKnown RBP eCLIP3.83□□□□□ -1.82e-8■■■■■ 98.1
SMC4-208ENST00000467468 WDR43Q15061 677 aaKnown RBP eCLIP3.04□□□□□ -1.925e-20■■■■■ 85.2
SMC4-208ENST00000467468 NIP7Q9Y221 180 aaKnown RBP eCLIP3.46□□□□□ -1.861e-7■■■■■ 83.2
SMC4-208ENST00000467468 PPIGQ13427 754 aaKnown RBP eCLIP4.11□□□□□ -1.752e-27■■■■■ 81.9
SMC4-208ENST00000467468 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.78□□□□□ -1.83e-18■■■■■ 78.4
SMC4-208ENST00000467468 NCBP2P52298 156 aaKnown RBP eCLIP2.9□□□□□ -1.952e-17■■■■■ 76.5
SMC4-208ENST00000467468 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.88□□□□□ -1.794e-23■■■■■ 72.8
SMC4-208ENST00000467468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.22□□□□□ -1.893e-9■■■■■ 72.1
SMC4-208ENST00000467468 HNRNPUQ00839 825 aaKnown RBP eCLIP6.88□□□□□ -1.312e-22■■■■■ 68.1
SMC4-208ENST00000467468 SMNDC1O75940 238 aaKnown RBP eCLIP7.14□□□□□ -1.272e-16■■■■■ 67.6
SMC4-208ENST00000467468 RBM22Q9NW64 420 aaKnown RBP eCLIP2.57□□□□□ -25e-24■■■■■ 66.5
SMC4-208ENST00000467468 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.91□□□□□ -1.781e-13■■■■■ 65.9
SMC4-208ENST00000467468 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.15□□□□□ -2.438e-11■■■■■ 62
SMC4-208ENST00000467468 TROVE2P10155 538 aaKnown RBP eCLIP3.23□□□□□ -1.891e-12■■■■■ 61.2
SMC4-208ENST00000467468 EIF3GO75821 320 aaKnown RBP eCLIP3.02□□□□□ -1.938e-13■■■■■ 59.2
SMC4-208ENST00000467468 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.17□□□□□ -1.92e-13■■■■■ 56.3
SMC4-208ENST00000467468 EIF3DO15371 548 aaKnown RBP eCLIP3.96□□□□□ -1.782e-16■■■■■ 56.2
SMC4-208ENST00000467468 SSBP05455 408 aaKnown RBP eCLIP6.18□□□□□ -1.429e-17■■■■■ 55.5
SMC4-208ENST00000467468 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.81□□□□□ -1.482e-6■■■■■ 54.3
SMC4-208ENST00000467468 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.88□□□□□ -1.631e-8■■■■■ 54.3
SMC4-208ENST00000467468 RBFOX2O43251 390 aaKnown RBP eCLIP2.59□□□□□ -1.993e-8■■■■■ 54.1
SMC4-208ENST00000467468 GRSF1Q12849 480 aaKnown RBP eCLIP4.16□□□□□ -1.742e-14■■■■■ 48.8
SMC4-208ENST00000467468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.54□□□□□ -0.728e-8■■■■■ 47.4
SMC4-208ENST00000467468 HNRNPLP14866 589 aaKnown RBP eCLIP5.32□□□□□ -1.562e-15■■■■■ 47.4
SMC4-208ENST00000467468 NIPBLQ6KC79 2804 aaeCLIP-0.43□□□□□ -2.488e-8■■■■■ 47
SMC4-208ENST00000467468 HNRNPKP61978 463 aaKnown RBP eCLIP4.06□□□□□ -1.765e-13■■■■■ 46
SMC4-208ENST00000467468 KHSRPQ92945 711 aaKnown RBP eCLIP9.79□□□□□ -0.843e-15■■■■■ 43.1
SMC4-208ENST00000467468 ILF3Q12906 894 aaKnown RBP eCLIP3.78□□□□□ -1.88e-14■■■■■ 40.3
SMC4-208ENST00000467468 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.35□□□□□ -1.397e-12■■■■■ 38.5
SMC4-208ENST00000467468 U2AF2P26368 475 aaKnown RBP eCLIP3□□□□□ -1.931e-7■■■■■ 37.8
SMC4-208ENST00000467468 FXR2P51116 673 aaKnown RBP eCLIP11.7□□□□□ -0.542e-10■■■■■ 37.2
SMC4-208ENST00000467468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.83□□□□□ -0.22e-7■■■■■ 32.9
SMC4-208ENST00000467468 SND1Q7KZF4 910 aaKnown RBP eCLIP7.04□□□□□ -1.286e-9■■■■■ 32.8
SMC4-208ENST00000467468 NOLC1Q14978 699 aaKnown RBP eCLIP5.41□□□□□ -1.544e-16■■■■■ 30.2
SMC4-208ENST00000467468 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.1□□□□□ -1.432e-7■■■■□ 26.2
SMC4-208ENST00000467468 UPF1Q92900 1129 aaKnown RBP eCLIP9.86□□□□□ -0.831e-11■■■■□ 26.2
SMC4-208ENST00000467468 TAF15Q92804 592 aaKnown RBP eCLIP3.39□□□□□ -1.877e-26■■■■□ 25.9
SMC4-208ENST00000467468 LARP4Q71RC2 724 aaKnown RBP eCLIP5.43□□□□□ -1.544e-12■■■■□ 24.2
SMC4-208ENST00000467468 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.04□□□□□ -1.445e-7■■■■□ 23.7
SMC4-208ENST00000467468 SF3B4Q15427 424 aaKnown RBP eCLIP3.88□□□□□ -1.792e-8■■■■□ 23.1
SMC4-208ENST00000467468 PCBP1Q15365 356 aaKnown RBP eCLIP5.6□□□□□ -1.513e-12■■■■□ 20.8
SMC4-208ENST00000467468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.96□□□□□ -1.782e-6■■■□□ 18.8
SMC4-208ENST00000467468 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.08□□□□□ -2.421e-7■■■□□ 17.3
SMC4-208ENST00000467468 TIA1P31483 386 aaKnown RBP eCLIP4□□□□□ -1.771e-7■■■□□ 16.3
SMC4-208ENST00000467468 SRSF1Q07955 248 aaKnown RBP eCLIP4.35□□□□□ -1.719e-8■■□□□ 13.7
SMC4-208ENST00000467468 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.48□□□□□ -1.697e-7■■□□□ 12.7
SMC4-208ENST00000467468 EFTUD2Q15029 972 aaKnown RBP eCLIP3.6□□□□□ -1.837e-8■■□□□ 12.6
SMC4-208ENST00000467468 MATR3P43243 847 aaKnown RBP eCLIP4.14□□□□□ -1.757e-8■■□□□ 11.8
SMC4-208ENST00000467468 GPKOWQ92917 476 aaPredicted RBP eCLIP8.39□□□□□ -1.074e-13■□□□□ 10.3
SMC4-208ENST00000467468 FMR1Q06787 632 aaKnown RBP eCLIP6.92□□□□□ -1.33e-7■□□□□ 10
SMC4-208ENST00000467468 HNRNPMP52272 730 aaKnown RBP eCLIP4.75□□□□□ -1.652e-9■□□□□ 8.7
Retrieved 85 of 85 RNA–protein pairs in 309 ms