RNA–Protein interactions for RNA: ENST00000467263.1

SMC4-207, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 401 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-207ENST00000467263 AEBP2Q6ZN18 517 aaPredicted RBP29.32■■■□□ 2.28
SMC4-207ENST00000467263 CHIC1Q5VXU3 224 aa27.78■■■□□ 2.04
SMC4-207ENST00000467263 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
SMC4-207ENST00000467263 PHF23Q9BUL5 403 aaPredicted RBP24.58■■□□□ 1.53
SMC4-207ENST00000467263 FOXD1Q16676 465 aa23.24■■□□□ 1.31
SMC4-207ENST00000467263 PLPPR3Q6T4P5 718 aa22.15■■□□□ 1.14
SMC4-207ENST00000467263 PPP6R1Q9UPN7 881 aa21.86■■□□□ 1.09
SMC4-207ENST00000467263 ADRA2BP18089 450 aa21.76■■□□□ 1.07
SMC4-207ENST00000467263 PIAS4Q8N2W9 510 aaPredicted RBP21.67■■□□□ 1.06
SMC4-207ENST00000467263 MSH5O43196 834 aa21.55■■□□□ 1.04
SMC4-207ENST00000467263 POTEDQ86YR6 584 aa21.07■□□□□ 0.96
SMC4-207ENST00000467263 MAPK8IP2Q13387 824 aaPredicted RBP20.01■□□□□ 0.79
SMC4-207ENST00000467263 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
SMC4-207ENST00000467263 SCAF1Q9H7N4 1312 aaKnown RBP19.66■□□□□ 0.74
SMC4-207ENST00000467263 PPP4R3CPQ6ZMV5 832 aa19.5■□□□□ 0.71
SMC4-207ENST00000467263 CNKSR2Q8WXI2 1034 aa19.04■□□□□ 0.64
SMC4-207ENST00000467263 HOXD11P31277 338 aaPredicted RBP19.02■□□□□ 0.64
SMC4-207ENST00000467263 DCAF8L1A6NGE4 600 aa18.92■□□□□ 0.62
SMC4-207ENST00000467263 RNF216Q9NWF9 866 aaPredicted RBP18.87■□□□□ 0.61
SMC4-207ENST00000467263 NCBP3Q53F19 620 aaKnown RBP18.63■□□□□ 0.57
SMC4-207ENST00000467263 NPM3O75607 178 aaKnown RBP18.53■□□□□ 0.56
SMC4-207ENST00000467263 CACNB1Q02641 598 aaPredicted RBP18.52■□□□□ 0.56
SMC4-207ENST00000467263 RNF39Q9H2S5 420 aa18.49■□□□□ 0.55
SMC4-207ENST00000467263 KCNA4P22459 653 aa18.29■□□□□ 0.52
SMC4-207ENST00000467263 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
SMC4-207ENST00000467263 C1QBPQ07021 282 aaKnown RBP18.15■□□□□ 0.5
SMC4-207ENST00000467263 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.49
SMC4-207ENST00000467263 U3KPZ7 1027 aaPredicted RBP17.82■□□□□ 0.44
SMC4-207ENST00000467263 SLC4A2P04920 1241 aa17.73■□□□□ 0.43
SMC4-207ENST00000467263 SPINK5Q9NQ38 1064 aaPredicted RBP17.58■□□□□ 0.4
SMC4-207ENST00000467263 CAPN15O75808 1086 aa17.44■□□□□ 0.38
SMC4-207ENST00000467263 DSG3P32926 999 aa17.36■□□□□ 0.37
SMC4-207ENST00000467263 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.35
SMC4-207ENST00000467263 SLC4A1APQ9BWU0 796 aaKnown RBP17.19■□□□□ 0.34
SMC4-207ENST00000467263 ABCB7O75027 752 aa17.12■□□□□ 0.33
SMC4-207ENST00000467263 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.11■□□□□ 0.33
SMC4-207ENST00000467263 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
SMC4-207ENST00000467263 SAMD1Q6SPF0 538 aaPredicted RBP17.08■□□□□ 0.32
SMC4-207ENST00000467263 ZNF219Q9P2Y4 722 aaPredicted RBP17.06■□□□□ 0.32
SMC4-207ENST00000467263 APLP2Q06481 763 aa17.05■□□□□ 0.32
SMC4-207ENST00000467263 MYCNP04198 464 aaPredicted RBP17.03■□□□□ 0.32
SMC4-207ENST00000467263 FOXD4L1Q9NU39 408 aa16.93■□□□□ 0.3
SMC4-207ENST00000467263 ZBTB22O15209 634 aa16.88■□□□□ 0.29
SMC4-207ENST00000467263 ATF5Q9Y2D1 282 aaPredicted RBP16.83■□□□□ 0.28
SMC4-207ENST00000467263 POLA2Q14181 598 aa16.76■□□□□ 0.27
SMC4-207ENST00000467263 POTEHQ6S545 545 aa16.48■□□□□ 0.23
SMC4-207ENST00000467263 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
SMC4-207ENST00000467263 ATXN8OSP0DMR3 200 aa16.32■□□□□ 0.2
SMC4-207ENST00000467263 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
SMC4-207ENST00000467263 ZBTB12Q9Y330 459 aaPredicted RBP16.25■□□□□ 0.19
SMC4-207ENST00000467263 CHRDL2Q6WN34 429 aa16.14■□□□□ 0.17
SMC4-207ENST00000467263 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
SMC4-207ENST00000467263 AKT1S1Q96B36 256 aa16.11■□□□□ 0.17
SMC4-207ENST00000467263 MKRN4PQ13434 485 aaPredicted RBP16.03■□□□□ 0.16
SMC4-207ENST00000467263 REM2Q8IYK8 340 aaPredicted RBP16.03■□□□□ 0.16
SMC4-207ENST00000467263 FBLN2P98095 1184 aa15.94■□□□□ 0.14
SMC4-207ENST00000467263 EHMT2Q96KQ7 1210 aa15.93■□□□□ 0.14
SMC4-207ENST00000467263 PITPNM1O00562 1244 aa15.88■□□□□ 0.13
SMC4-207ENST00000467263 SPDYE2BA6NHP3 402 aa15.84■□□□□ 0.13
SMC4-207ENST00000467263 SPDYE6P0CI01 402 aa15.84■□□□□ 0.13
SMC4-207ENST00000467263 SPDYE2Q495Y8 402 aa15.84■□□□□ 0.13
SMC4-207ENST00000467263 PIP4P2Q8N4L2 257 aa15.81■□□□□ 0.12
SMC4-207ENST00000467263 FXR2P51116 673 aaKnown RBP eCLIP15.7■□□□□ 0.1
SMC4-207ENST00000467263 ZNF692Q9BU19 519 aaPredicted RBP15.7■□□□□ 0.1
SMC4-207ENST00000467263 SSUH2Q9Y2M2 353 aa15.7■□□□□ 0.1
SMC4-207ENST00000467263 CLEC11AQ9Y240 323 aa15.59■□□□□ 0.09
SMC4-207ENST00000467263 SPDYE1Q8NFV5 336 aaPredicted RBP15.54■□□□□ 0.08
SMC4-207ENST00000467263 PABPN1Q86U42 306 aaKnown RBP eCLIP15.51■□□□□ 0.07
SMC4-207ENST00000467263 SP7Q8TDD2 431 aaPredicted RBP15.47■□□□□ 0.07
SMC4-207ENST00000467263 HAX1O00165 279 aa15.46■□□□□ 0.07
SMC4-207ENST00000467263 PRKAR2AP13861 404 aaKnown RBP15.44■□□□□ 0.06
SMC4-207ENST00000467263 EVX2Q03828 476 aa15.44■□□□□ 0.06
SMC4-207ENST00000467263 CHADLQ6NUI6 762 aa15.37■□□□□ 0.05
SMC4-207ENST00000467263 PRR29P0C7W0 189 aa15.29■□□□□ 0.04
SMC4-207ENST00000467263 SPDYE4A6NLX3 237 aa15.2■□□□□ 0.02
SMC4-207ENST00000467263 C19orf67A6NJJ6 358 aa15.19■□□□□ 0.02
SMC4-207ENST00000467263 FARP1Q9Y4F1 1045 aaPredicted RBP15.06■□□□□ 0
SMC4-207ENST00000467263 CREBZFQ9NS37 354 aa15.02■□□□□ -0
SMC4-207ENST00000467263 GABBR2O75899 941 aa14.98□□□□□ -0.01
SMC4-207ENST00000467263 STAG3Q9UJ98 1225 aa14.95□□□□□ -0.02
SMC4-207ENST00000467263 CD44P16070 742 aaKnown RBP14.94□□□□□ -0.02
SMC4-207ENST00000467263 PROM2Q8N271 834 aa14.86□□□□□ -0.03
SMC4-207ENST00000467263 MNX1P50219 401 aaPredicted RBP14.79□□□□□ -0.04
SMC4-207ENST00000467263 ZRANB1Q9UGI0 708 aa14.75□□□□□ -0.05
SMC4-207ENST00000467263 POTEIP0CG38 1075 aa14.74□□□□□ -0.05
SMC4-207ENST00000467263 ZNF579Q8NAF0 562 aaKnown RBP14.7□□□□□ -0.06
SMC4-207ENST00000467263 PHF12Q96QT6 1004 aa14.63□□□□□ -0.07
SMC4-207ENST00000467263 GALR2O43603 387 aaPredicted RBP14.6□□□□□ -0.07
SMC4-207ENST00000467263 NPM1P06748 294 aaKnown RBP eCLIP14.59□□□□□ -0.07
SMC4-207ENST00000467263 FKBP8Q14318 412 aa14.56□□□□□ -0.08
SMC4-207ENST00000467263 CLCN6P51797 869 aa14.53□□□□□ -0.08
SMC4-207ENST00000467263 LHX8Q68G74 356 aa14.52□□□□□ -0.09
SMC4-207ENST00000467263 PAK3O75914 559 aaPredicted RBP14.51□□□□□ -0.09
SMC4-207ENST00000467263 DCBLD2Q96PD2 775 aa14.51□□□□□ -0.09
SMC4-207ENST00000467263 MIER1Q8N108 512 aa14.48□□□□□ -0.09
SMC4-207ENST00000467263 TSPYL2Q9H2G4 693 aaPredicted RBP14.47□□□□□ -0.09
SMC4-207ENST00000467263 MS4A3Q96HJ5 214 aa14.41□□□□□ -0.1
SMC4-207ENST00000467263 RASEFQ8IZ41 740 aa14.39□□□□□ -0.11
SMC4-207ENST00000467263 CCDC61Q9Y6R9 512 aa14.39□□□□□ -0.11
SMC4-207ENST00000467263 PELP1Q8IZL8 1130 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms