RNA–Protein interactions for RNA: ENST00000467062.5

SNAPC3-205, Transcript of small nuclear RNA activating complex polypeptide 3, humanhuman

TSL 1 (best)

Gene SNAPC3, Length 2,574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNAPC3-205ENST00000467062 NISCHQ9Y2I1 1504 aa36.81■■■■□ 3.48
SNAPC3-205ENST00000467062 SHROOM4Q9ULL8 1493 aa31.73■■■□□ 2.67
SNAPC3-205ENST00000467062 DCAF8L2P0C7V8 631 aa31.14■■■□□ 2.58
SNAPC3-205ENST00000467062 CCDC180Q9P1Z9 1646 aa31.07■■■□□ 2.56
SNAPC3-205ENST00000467062 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
SNAPC3-205ENST00000467062 ZCCHC6Q5VYS8 1495 aaKnown RBP31.05■■■□□ 2.56
SNAPC3-205ENST00000467062 HRCP23327 699 aa30.18■■■□□ 2.42
SNAPC3-205ENST00000467062 PELP1Q8IZL8 1130 aaKnown RBP30.18■■■□□ 2.42
SNAPC3-205ENST00000467062 DCAF1Q9Y4B6 1507 aa29.97■■■□□ 2.39
SNAPC3-205ENST00000467062 CHIC1Q5VXU3 224 aa29.94■■■□□ 2.38
SNAPC3-205ENST00000467062 MYO15BQ96JP2 1530 aa29.75■■■□□ 2.35
SNAPC3-205ENST00000467062 SCRIBQ14160 1630 aa29.48■■■□□ 2.31
SNAPC3-205ENST00000467062 ABCC9O60706 1549 aa29.44■■■□□ 2.3
SNAPC3-205ENST00000467062 MYT1Q01538 1121 aa29.28■■■□□ 2.28
SNAPC3-205ENST00000467062 PPARGC1BQ86YN6 1023 aaKnown RBP29.27■■■□□ 2.28
SNAPC3-205ENST00000467062 LOC105371045A0A1W2PR82 267 aa29.25■■■□□ 2.27
SNAPC3-205ENST00000467062 RSF1Q96T23 1441 aaPredicted RBP29.19■■■□□ 2.26
SNAPC3-205ENST00000467062 PCGF6Q9BYE7 350 aa29.16■■■□□ 2.26
SNAPC3-205ENST00000467062 CECR2Q9BXF3 1484 aa28.92■■■□□ 2.22
SNAPC3-205ENST00000467062 NACADO15069 1562 aa28.9■■■□□ 2.22
SNAPC3-205ENST00000467062 RB1CC1Q8TDY2 1594 aa28.81■■■□□ 2.2
SNAPC3-205ENST00000467062 TRIM41Q8WV44 630 aa28.81■■■□□ 2.2
SNAPC3-205ENST00000467062 FAM9AQ8IZU1 332 aaPredicted RBP28.78■■■□□ 2.2
SNAPC3-205ENST00000467062 SCAF1Q9H7N4 1312 aaKnown RBP28.74■■■□□ 2.19
SNAPC3-205ENST00000467062 EHMT2Q96KQ7 1210 aa28.72■■■□□ 2.19
SNAPC3-205ENST00000467062 MROH2BQ7Z745 1585 aa28.72■■■□□ 2.19
SNAPC3-205ENST00000467062 WIZO95785 1651 aa28.51■■■□□ 2.15
SNAPC3-205ENST00000467062 ZEB1P37275 1124 aaPredicted RBP28.38■■■□□ 2.13
SNAPC3-205ENST00000467062 PABPN1Q86U42 306 aaKnown RBP eCLIP28.32■■■□□ 2.12
SNAPC3-205ENST00000467062 TRIM26Q12899 539 aaPredicted RBP28.28■■■□□ 2.12
SNAPC3-205ENST00000467062 BAZ1AQ9NRL2 1556 aaPredicted RBP28.22■■■□□ 2.11
SNAPC3-205ENST00000467062 UNC13AQ9UPW8 1703 aa28.03■■■□□ 2.08
SNAPC3-205ENST00000467062 SMARCA4P51532 1647 aa28.01■■■□□ 2.07
SNAPC3-205ENST00000467062 ACIN1Q9UKV3 1341 aaKnown RBP27.99■■■□□ 2.07
SNAPC3-205ENST00000467062 CCDC88BA6NC98 1476 aa27.99■■■□□ 2.07
SNAPC3-205ENST00000467062 TOP2AP11388 1531 aaKnown RBP27.93■■■□□ 2.06
SNAPC3-205ENST00000467062 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
SNAPC3-205ENST00000467062 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
SNAPC3-205ENST00000467062 SMARCA2P51531 1590 aa27.83■■■□□ 2.05
SNAPC3-205ENST00000467062 BICRAQ9NZM4 1560 aa27.81■■■□□ 2.04
SNAPC3-205ENST00000467062 NEUROD1Q13562 356 aa27.77■■■□□ 2.04
SNAPC3-205ENST00000467062 GTF3C3Q9Y5Q9 886 aa27.71■■■□□ 2.03
SNAPC3-205ENST00000467062 SOGA1O94964 1423 aa27.7■■■□□ 2.02
SNAPC3-205ENST00000467062 TTBK1Q5TCY1 1321 aaPredicted RBP27.69■■■□□ 2.02
SNAPC3-205ENST00000467062 CENPBP07199 599 aaPredicted RBP27.66■■■□□ 2.02
SNAPC3-205ENST00000467062 RUSC2Q8N2Y8 1516 aa27.59■■■□□ 2.01
SNAPC3-205ENST00000467062 UBTFP17480 764 aaKnown RBP27.52■■■□□ 2
SNAPC3-205ENST00000467062 CSRNP3Q8WYN3 585 aa27.51■■□□□ 1.99
SNAPC3-205ENST00000467062 ATAD2BQ9ULI0 1458 aa27.44■■□□□ 1.98
SNAPC3-205ENST00000467062 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
SNAPC3-205ENST00000467062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.41■■□□□ 1.98
SNAPC3-205ENST00000467062 CEP162Q5TB80 1403 aa27.39■■□□□ 1.98
SNAPC3-205ENST00000467062 BAZ1BQ9UIG0 1483 aaKnown RBP27.36■■□□□ 1.97
SNAPC3-205ENST00000467062 PEG3Q9GZU2 1588 aa27.36■■□□□ 1.97
SNAPC3-205ENST00000467062 TNIKQ9UKE5 1360 aa27.29■■□□□ 1.96
SNAPC3-205ENST00000467062 RANGAP1P46060 587 aaPredicted RBP27.26■■□□□ 1.95
SNAPC3-205ENST00000467062 SYNJ1O43426 1573 aa27.23■■□□□ 1.95
SNAPC3-205ENST00000467062 CCER1Q8TC90 406 aaPredicted RBP27.23■■□□□ 1.95
SNAPC3-205ENST00000467062 DIEXFQ68CQ4 756 aaKnown RBP27.2■■□□□ 1.95
SNAPC3-205ENST00000467062 EEA1Q15075 1411 aa27.2■■□□□ 1.95
SNAPC3-205ENST00000467062 GOLGA3Q08378 1498 aa27.13■■□□□ 1.93
SNAPC3-205ENST00000467062 CEP164Q9UPV0 1460 aa26.98■■□□□ 1.91
SNAPC3-205ENST00000467062 RAPGEF2Q9Y4G8 1499 aa26.96■■□□□ 1.91
SNAPC3-205ENST00000467062 BCL11AQ9H165 835 aa26.95■■□□□ 1.9
SNAPC3-205ENST00000467062 CLIP1P30622 1438 aa26.93■■□□□ 1.9
SNAPC3-205ENST00000467062 HNRNPUL2Q1KMD3 747 aaKnown RBP26.88■■□□□ 1.89
SNAPC3-205ENST00000467062 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
SNAPC3-205ENST00000467062 KIF21BO75037 1637 aa26.81■■□□□ 1.88
SNAPC3-205ENST00000467062 TOP2BQ02880 1626 aa26.8■■□□□ 1.88
SNAPC3-205ENST00000467062 APLP2Q06481 763 aa26.77■■□□□ 1.88
SNAPC3-205ENST00000467062 ANP32EQ9BTT0 268 aa26.72■■□□□ 1.87
SNAPC3-205ENST00000467062 HMGXB3Q12766 1538 aa26.72■■□□□ 1.87
SNAPC3-205ENST00000467062 VPS8Q8N3P4 1428 aa26.71■■□□□ 1.87
SNAPC3-205ENST00000467062 CUX1P39880 1505 aa26.7■■□□□ 1.86
SNAPC3-205ENST00000467062 YTHDC1Q96MU7 727 aaKnown RBP26.65■■□□□ 1.86
SNAPC3-205ENST00000467062 CFTRP13569 1480 aa26.64■■□□□ 1.86
SNAPC3-205ENST00000467062 BIVM-ERCC5R4GMW8 1640 aa26.62■■□□□ 1.85
SNAPC3-205ENST00000467062 ZNF316A6NFI3 1004 aaPredicted RBP26.6■■□□□ 1.85
SNAPC3-205ENST00000467062 PRXQ9BXM0 1461 aa26.59■■□□□ 1.85
SNAPC3-205ENST00000467062 KIF27Q86VH2 1401 aa26.55■■□□□ 1.84
SNAPC3-205ENST00000467062 KANK4Q5T7N3 995 aaPredicted RBP26.54■■□□□ 1.84
SNAPC3-205ENST00000467062 CLSPNQ9HAW4 1339 aa26.53■■□□□ 1.84
SNAPC3-205ENST00000467062 ARAP1Q96P48 1450 aa26.45■■□□□ 1.82
SNAPC3-205ENST00000467062 CADPSQ9ULU8 1353 aa26.45■■□□□ 1.82
SNAPC3-205ENST00000467062 ERICH3Q5RHP9 1530 aa26.42■■□□□ 1.82
SNAPC3-205ENST00000467062 CUX2O14529 1486 aa26.4■■□□□ 1.82
SNAPC3-205ENST00000467062 MIER1Q8N108 512 aa26.38■■□□□ 1.81
SNAPC3-205ENST00000467062 IGF1RP08069 1367 aa26.37■■□□□ 1.81
SNAPC3-205ENST00000467062 CC2D2AQ9P2K1 1620 aa26.32■■□□□ 1.8
SNAPC3-205ENST00000467062 ITGAEP38570 1179 aa26.31■■□□□ 1.8
SNAPC3-205ENST00000467062 TSHZ2Q9NRE2 1034 aa26.31■■□□□ 1.8
SNAPC3-205ENST00000467062 P3H3Q8IVL6 736 aa26.28■■□□□ 1.8
SNAPC3-205ENST00000467062 SUPT16HQ9Y5B9 1047 aaKnown RBP26.28■■□□□ 1.8
SNAPC3-205ENST00000467062 ARHGAP35Q9NRY4 1499 aa26.28■■□□□ 1.8
SNAPC3-205ENST00000467062 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
SNAPC3-205ENST00000467062 CARMIL1Q5VZK9 1371 aa26.25■■□□□ 1.79
SNAPC3-205ENST00000467062 PRKCSHP14314 528 aaPredicted RBP26.21■■□□□ 1.79
SNAPC3-205ENST00000467062 NESP48681 1621 aa26.19■■□□□ 1.78
SNAPC3-205ENST00000467062 ATP1B4Q9UN42 357 aaPredicted RBP26.19■■□□□ 1.78
SNAPC3-205ENST00000467062 FANCD2Q9BXW9 1451 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms