RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 NISCHQ9Y2I1 1504 aa15.93■□□□□ 0.14
HPS4-208ENST00000464362 DCAF8L2P0C7V8 631 aa15.88■□□□□ 0.13
HPS4-208ENST00000464362 SUPT5HO00267 1087 aaKnown RBP15.55■□□□□ 0.08
HPS4-208ENST00000464362 SHROOM4Q9ULL8 1493 aa15.43■□□□□ 0.06
HPS4-208ENST00000464362 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
HPS4-208ENST00000464362 PCGF6Q9BYE7 350 aa14.74□□□□□ -0.05
HPS4-208ENST00000464362 FAM9AQ8IZU1 332 aaPredicted RBP14.64□□□□□ -0.07
HPS4-208ENST00000464362 TTBK1Q5TCY1 1321 aaPredicted RBP14.48□□□□□ -0.09
HPS4-208ENST00000464362 PPARGC1BQ86YN6 1023 aaKnown RBP14.24□□□□□ -0.13
HPS4-208ENST00000464362 LOC105371045A0A1W2PR82 267 aa14.23□□□□□ -0.13
HPS4-208ENST00000464362 TRIM41Q8WV44 630 aa14.23□□□□□ -0.13
HPS4-208ENST00000464362 CHIC1Q5VXU3 224 aa14.17□□□□□ -0.14
HPS4-208ENST00000464362 RANGAP1P46060 587 aaPredicted RBP14.15□□□□□ -0.14
HPS4-208ENST00000464362 HRCP23327 699 aa14.13□□□□□ -0.15
HPS4-208ENST00000464362 CCER1Q8TC90 406 aaPredicted RBP14.07□□□□□ -0.16
HPS4-208ENST00000464362 APLP2Q06481 763 aa14.02□□□□□ -0.17
HPS4-208ENST00000464362 PELP1Q8IZL8 1130 aaKnown RBP14□□□□□ -0.17
HPS4-208ENST00000464362 TRIM26Q12899 539 aaPredicted RBP13.95□□□□□ -0.18
HPS4-208ENST00000464362 ZEB1P37275 1124 aaPredicted RBP13.93□□□□□ -0.18
HPS4-208ENST00000464362 UBTFP17480 764 aaKnown RBP13.92□□□□□ -0.18
HPS4-208ENST00000464362 YTHDC1Q96MU7 727 aaKnown RBP13.9□□□□□ -0.19
HPS4-208ENST00000464362 CCDC180Q9P1Z9 1646 aa13.88□□□□□ -0.19
HPS4-208ENST00000464362 MYT1Q01538 1121 aa13.83□□□□□ -0.2
HPS4-208ENST00000464362 CENPBP07199 599 aaPredicted RBP13.82□□□□□ -0.2
HPS4-208ENST00000464362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.73□□□□□ -0.21
HPS4-208ENST00000464362 ATP1B4Q9UN42 357 aaPredicted RBP13.72□□□□□ -0.21
HPS4-208ENST00000464362 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
HPS4-208ENST00000464362 ITGAEP38570 1179 aa13.59□□□□□ -0.23
HPS4-208ENST00000464362 DIEXFQ68CQ4 756 aaKnown RBP13.48□□□□□ -0.25
HPS4-208ENST00000464362 MYO15BQ96JP2 1530 aa13.4□□□□□ -0.27
HPS4-208ENST00000464362 ABCC9O60706 1549 aa13.39□□□□□ -0.27
HPS4-208ENST00000464362 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
HPS4-208ENST00000464362 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
HPS4-208ENST00000464362 ZCCHC6Q5VYS8 1495 aaKnown RBP13.33□□□□□ -0.28
HPS4-208ENST00000464362 CNGB1Q14028 1251 aaPredicted RBP13.31□□□□□ -0.28
HPS4-208ENST00000464362 NEFLP07196 543 aa13.31□□□□□ -0.28
HPS4-208ENST00000464362 ERICH6Q7L0X2 663 aa13.29□□□□□ -0.28
HPS4-208ENST00000464362 POLR3GLQ9BT43 218 aa13.2□□□□□ -0.3
HPS4-208ENST00000464362 ACIN1Q9UKV3 1341 aaKnown RBP13.17□□□□□ -0.3
HPS4-208ENST00000464362 BCANQ96GW7 911 aa13.17□□□□□ -0.3
HPS4-208ENST00000464362 NEUROD1Q13562 356 aa13.15□□□□□ -0.3
HPS4-208ENST00000464362 DCAF1Q9Y4B6 1507 aa13.14□□□□□ -0.31
HPS4-208ENST00000464362 ZNF316A6NFI3 1004 aaPredicted RBP13.14□□□□□ -0.31
HPS4-208ENST00000464362 FAM50AQ14320 339 aaKnown RBP13.13□□□□□ -0.31
HPS4-208ENST00000464362 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
HPS4-208ENST00000464362 SCAF1Q9H7N4 1312 aaKnown RBP13.1□□□□□ -0.31
HPS4-208ENST00000464362 SCRIBQ14160 1630 aa13.08□□□□□ -0.32
HPS4-208ENST00000464362 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
HPS4-208ENST00000464362 ARID3CA6NKF2 412 aa12.93□□□□□ -0.34
HPS4-208ENST00000464362 TRIM52Q96A61 297 aa12.93□□□□□ -0.34
HPS4-208ENST00000464362 RSF1Q96T23 1441 aaPredicted RBP12.92□□□□□ -0.34
HPS4-208ENST00000464362 MIER1Q8N108 512 aa12.92□□□□□ -0.34
HPS4-208ENST00000464362 ZNF326Q5BKZ1 582 aaKnown RBP12.86□□□□□ -0.35
HPS4-208ENST00000464362 HIRIP3Q9BW71 556 aaPredicted RBP12.84□□□□□ -0.35
HPS4-208ENST00000464362 ANP32CO43423 234 aa12.84□□□□□ -0.35
HPS4-208ENST00000464362 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
HPS4-208ENST00000464362 UNC13AQ9UPW8 1703 aa12.82□□□□□ -0.36
HPS4-208ENST00000464362 MYT1LQ9UL68 1186 aa12.81□□□□□ -0.36
HPS4-208ENST00000464362 NACADO15069 1562 aa12.79□□□□□ -0.36
HPS4-208ENST00000464362 FKBP8Q14318 412 aa12.78□□□□□ -0.36
HPS4-208ENST00000464362 CEP162Q5TB80 1403 aa12.74□□□□□ -0.37
HPS4-208ENST00000464362 CECR2Q9BXF3 1484 aa12.73□□□□□ -0.37
HPS4-208ENST00000464362 CLIP1P30622 1438 aa12.7□□□□□ -0.38
HPS4-208ENST00000464362 FBLN2P98095 1184 aa12.69□□□□□ -0.38
HPS4-208ENST00000464362 DAXXQ9UER7 740 aaPredicted RBP12.68□□□□□ -0.38
HPS4-208ENST00000464362 SLC4A1APQ9BWU0 796 aaKnown RBP12.67□□□□□ -0.38
HPS4-208ENST00000464362 CHIC2Q9UKJ5 165 aa12.67□□□□□ -0.38
HPS4-208ENST00000464362 HNRNPUQ00839 825 aaKnown RBP eCLIP12.67□□□□□ -0.38
HPS4-208ENST00000464362 IRX6P78412 446 aaPredicted RBP12.66□□□□□ -0.38
HPS4-208ENST00000464362 CDK11AQ9UQ88 783 aaPredicted RBP12.66□□□□□ -0.38
HPS4-208ENST00000464362 RB1CC1Q8TDY2 1594 aa12.64□□□□□ -0.39
HPS4-208ENST00000464362 SENP3-EIF4A1A0A087X0R7 540 aa12.63□□□□□ -0.39
HPS4-208ENST00000464362 ZNF777Q9ULD5 760 aaPredicted RBP12.63□□□□□ -0.39
HPS4-208ENST00000464362 FAM9BQ8IZU0 186 aa12.63□□□□□ -0.39
HPS4-208ENST00000464362 SOGA1O94964 1423 aa12.62□□□□□ -0.39
HPS4-208ENST00000464362 TONSLQ96HA7 1378 aa12.61□□□□□ -0.39
HPS4-208ENST00000464362 RTL5Q5HYW3 569 aaPredicted RBP12.61□□□□□ -0.39
HPS4-208ENST00000464362 CLSPNQ9HAW4 1339 aa12.59□□□□□ -0.39
HPS4-208ENST00000464362 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
HPS4-208ENST00000464362 BICRAQ9NZM4 1560 aa12.57□□□□□ -0.4
HPS4-208ENST00000464362 SIN3AQ96ST3 1273 aa12.56□□□□□ -0.4
HPS4-208ENST00000464362 TNIKQ9UKE5 1360 aa12.56□□□□□ -0.4
HPS4-208ENST00000464362 WRNQ14191 1432 aaPredicted RBP eCLIP12.55□□□□□ -0.49e-6■■■■■ 50.1
HPS4-208ENST00000464362 GOLGA3Q08378 1498 aa12.54□□□□□ -0.4
HPS4-208ENST00000464362 NPM2Q86SE8 214 aaKnown RBP12.53□□□□□ -0.4
HPS4-208ENST00000464362 RRP7BPQ9NSQ0 103 aa12.51□□□□□ -0.41
HPS4-208ENST00000464362 MROH2BQ7Z745 1585 aa12.51□□□□□ -0.41
HPS4-208ENST00000464362 ABCC8Q09428 1581 aa12.5□□□□□ -0.41
HPS4-208ENST00000464362 CCDC88BA6NC98 1476 aa12.49□□□□□ -0.41
HPS4-208ENST00000464362 BCL11AQ9H165 835 aa12.48□□□□□ -0.41
HPS4-208ENST00000464362 MRS2Q9HD23 443 aa12.46□□□□□ -0.41
HPS4-208ENST00000464362 KANK4Q5T7N3 995 aaPredicted RBP12.46□□□□□ -0.41
HPS4-208ENST00000464362 EEA1Q15075 1411 aa12.45□□□□□ -0.42
HPS4-208ENST00000464362 MTUS2Q5JR59 1369 aa12.44□□□□□ -0.42
HPS4-208ENST00000464362 SUPT16HQ9Y5B9 1047 aaKnown RBP12.44□□□□□ -0.42
HPS4-208ENST00000464362 KDM2AQ9Y2K7 1162 aa12.43□□□□□ -0.42
HPS4-208ENST00000464362 NBR1Q14596 966 aa12.42□□□□□ -0.42
HPS4-208ENST00000464362 CEP164Q9UPV0 1460 aa12.41□□□□□ -0.42
HPS4-208ENST00000464362 ANP32AP39687 249 aaKnown RBP12.39□□□□□ -0.43
HPS4-208ENST00000464362 TMC1Q8TDI8 760 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms