RNA–Protein interactions for RNA: ENST00000460469.1

NMD3-202, Transcript of NMD3 ribosome export adaptor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NMD3, Length 3,061 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NMD3-202ENST00000460469 NISCHQ9Y2I1 1504 aa35.23■■■■□ 3.23
NMD3-202ENST00000460469 SHROOM4Q9ULL8 1493 aa30.96■■■□□ 2.55
NMD3-202ENST00000460469 SUPT5HO00267 1087 aaKnown RBP30.42■■■□□ 2.46
NMD3-202ENST00000460469 DCAF8L2P0C7V8 631 aa30.07■■■□□ 2.4
NMD3-202ENST00000460469 ZCCHC6Q5VYS8 1495 aaKnown RBP29.76■■■□□ 2.35
NMD3-202ENST00000460469 CCDC180Q9P1Z9 1646 aa29.46■■■□□ 2.31
NMD3-202ENST00000460469 CHIC1Q5VXU3 224 aa29.33■■■□□ 2.29
NMD3-202ENST00000460469 MYO15BQ96JP2 1530 aa29.31■■■□□ 2.28
NMD3-202ENST00000460469 PCGF6Q9BYE7 350 aa28.87■■■□□ 2.21
NMD3-202ENST00000460469 LOC105371045A0A1W2PR82 267 aa28.81■■■□□ 2.2
NMD3-202ENST00000460469 HRCP23327 699 aa28.65■■■□□ 2.18
NMD3-202ENST00000460469 PPARGC1BQ86YN6 1023 aaKnown RBP28.52■■■□□ 2.16
NMD3-202ENST00000460469 DCAF1Q9Y4B6 1507 aa28.51■■■□□ 2.15
NMD3-202ENST00000460469 EHMT2Q96KQ7 1210 aa28.31■■■□□ 2.12
NMD3-202ENST00000460469 SCRIBQ14160 1630 aa28.27■■■□□ 2.12
NMD3-202ENST00000460469 FAM9AQ8IZU1 332 aaPredicted RBP28.23■■■□□ 2.11
NMD3-202ENST00000460469 RSF1Q96T23 1441 aaPredicted RBP28.11■■■□□ 2.09
NMD3-202ENST00000460469 ABCC9O60706 1549 aa28.07■■■□□ 2.08
NMD3-202ENST00000460469 TRIM41Q8WV44 630 aa28.05■■■□□ 2.08
NMD3-202ENST00000460469 TRIM26Q12899 539 aaPredicted RBP27.9■■■□□ 2.06
NMD3-202ENST00000460469 RB1CC1Q8TDY2 1594 aa27.88■■■□□ 2.05
NMD3-202ENST00000460469 CECR2Q9BXF3 1484 aa27.8■■■□□ 2.04
NMD3-202ENST00000460469 MROH2BQ7Z745 1585 aa27.59■■■□□ 2.01
NMD3-202ENST00000460469 WIZO95785 1651 aa27.44■■□□□ 1.98
NMD3-202ENST00000460469 NACADO15069 1562 aa27.36■■□□□ 1.97
NMD3-202ENST00000460469 TTBK1Q5TCY1 1321 aaPredicted RBP27.35■■□□□ 1.97
NMD3-202ENST00000460469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.15■■□□□ 1.94
NMD3-202ENST00000460469 ZEB1P37275 1124 aaPredicted RBP27.11■■□□□ 1.93
NMD3-202ENST00000460469 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
NMD3-202ENST00000460469 PABPN1Q86U42 306 aaKnown RBP eCLIP27.04■■□□□ 1.92
NMD3-202ENST00000460469 BAZ1AQ9NRL2 1556 aaPredicted RBP26.98■■□□□ 1.91
NMD3-202ENST00000460469 CCDC88BA6NC98 1476 aa26.97■■□□□ 1.91
NMD3-202ENST00000460469 CCER1Q8TC90 406 aaPredicted RBP26.92■■□□□ 1.9
NMD3-202ENST00000460469 SOGA1O94964 1423 aa26.87■■□□□ 1.89
NMD3-202ENST00000460469 EIF4G1Q04637 1599 aaKnown RBP26.84■■□□□ 1.89
NMD3-202ENST00000460469 UBTFP17480 764 aaKnown RBP26.8■■□□□ 1.88
NMD3-202ENST00000460469 RUSC2Q8N2Y8 1516 aa26.78■■□□□ 1.88
NMD3-202ENST00000460469 SMARCA4P51532 1647 aa26.76■■□□□ 1.87
NMD3-202ENST00000460469 TOP2AP11388 1531 aaKnown RBP26.75■■□□□ 1.87
NMD3-202ENST00000460469 SMARCA2P51531 1590 aa26.71■■□□□ 1.87
NMD3-202ENST00000460469 SCAF1Q9H7N4 1312 aaKnown RBP26.7■■□□□ 1.86
NMD3-202ENST00000460469 CEP162Q5TB80 1403 aa26.68■■□□□ 1.86
NMD3-202ENST00000460469 RANGAP1P46060 587 aaPredicted RBP26.66■■□□□ 1.86
NMD3-202ENST00000460469 CSRNP3Q8WYN3 585 aa26.65■■□□□ 1.86
NMD3-202ENST00000460469 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
NMD3-202ENST00000460469 TNIKQ9UKE5 1360 aa26.46■■□□□ 1.83
NMD3-202ENST00000460469 HNRNPUL2Q1KMD3 747 aaKnown RBP26.43■■□□□ 1.82
NMD3-202ENST00000460469 DIEXFQ68CQ4 756 aaKnown RBP26.42■■□□□ 1.82
NMD3-202ENST00000460469 WRNQ14191 1432 aaPredicted RBP eCLIP26.4■■□□□ 1.82
NMD3-202ENST00000460469 NEUROD1Q13562 356 aa26.37■■□□□ 1.81
NMD3-202ENST00000460469 BICRAQ9NZM4 1560 aa26.37■■□□□ 1.81
NMD3-202ENST00000460469 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
NMD3-202ENST00000460469 SYNJ1O43426 1573 aa26.25■■□□□ 1.79
NMD3-202ENST00000460469 ACIN1Q9UKV3 1341 aaKnown RBP26.22■■□□□ 1.79
NMD3-202ENST00000460469 EEA1Q15075 1411 aa26.21■■□□□ 1.79
NMD3-202ENST00000460469 YTHDC1Q96MU7 727 aaKnown RBP26.16■■□□□ 1.78
NMD3-202ENST00000460469 CLIP1P30622 1438 aa26.14■■□□□ 1.78
NMD3-202ENST00000460469 ATAD2BQ9ULI0 1458 aa26.14■■□□□ 1.78
NMD3-202ENST00000460469 RAPGEF2Q9Y4G8 1499 aa26.12■■□□□ 1.77
NMD3-202ENST00000460469 GTF3C3Q9Y5Q9 886 aa26.11■■□□□ 1.77
NMD3-202ENST00000460469 BAZ1BQ9UIG0 1483 aaKnown RBP26.11■■□□□ 1.77
NMD3-202ENST00000460469 CEP164Q9UPV0 1460 aa26.07■■□□□ 1.76
NMD3-202ENST00000460469 APLP2Q06481 763 aa26.07■■□□□ 1.76
NMD3-202ENST00000460469 ZNF316A6NFI3 1004 aaPredicted RBP26.06■■□□□ 1.76
NMD3-202ENST00000460469 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
NMD3-202ENST00000460469 MIER1Q8N108 512 aa25.94■■□□□ 1.74
NMD3-202ENST00000460469 CENPBP07199 599 aaPredicted RBP25.93■■□□□ 1.74
NMD3-202ENST00000460469 VPS8Q8N3P4 1428 aa25.93■■□□□ 1.74
NMD3-202ENST00000460469 KIF21BO75037 1637 aa25.88■■□□□ 1.73
NMD3-202ENST00000460469 KANK4Q5T7N3 995 aaPredicted RBP25.88■■□□□ 1.73
NMD3-202ENST00000460469 ITGAEP38570 1179 aa25.79■■□□□ 1.72
NMD3-202ENST00000460469 PELP1Q8IZL8 1130 aaKnown RBP25.71■■□□□ 1.71
NMD3-202ENST00000460469 TOP2BQ02880 1626 aa25.71■■□□□ 1.71
NMD3-202ENST00000460469 ARAP1Q96P48 1450 aa25.63■■□□□ 1.69
NMD3-202ENST00000460469 CUX1P39880 1505 aa25.61■■□□□ 1.69
NMD3-202ENST00000460469 PRXQ9BXM0 1461 aa25.61■■□□□ 1.69
NMD3-202ENST00000460469 DHX57Q6P158 1386 aaKnown RBP25.55■■□□□ 1.68
NMD3-202ENST00000460469 P3H3Q8IVL6 736 aa25.51■■□□□ 1.67
NMD3-202ENST00000460469 KIF27Q86VH2 1401 aa25.5■■□□□ 1.67
NMD3-202ENST00000460469 BIVM-ERCC5R4GMW8 1640 aa25.5■■□□□ 1.67
NMD3-202ENST00000460469 ATP1B4Q9UN42 357 aaPredicted RBP25.47■■□□□ 1.67
NMD3-202ENST00000460469 NCAPD3P42695 1498 aa25.47■■□□□ 1.67
NMD3-202ENST00000460469 ERICH3Q5RHP9 1530 aa25.42■■□□□ 1.66
NMD3-202ENST00000460469 ARHGAP35Q9NRY4 1499 aa25.41■■□□□ 1.66
NMD3-202ENST00000460469 CFTRP13569 1480 aa25.38■■□□□ 1.65
NMD3-202ENST00000460469 CUX2O14529 1486 aa25.37■■□□□ 1.65
NMD3-202ENST00000460469 CCNB3Q8WWL7 1395 aa25.34■■□□□ 1.65
NMD3-202ENST00000460469 IGF1RP08069 1367 aa25.33■■□□□ 1.65
NMD3-202ENST00000460469 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
NMD3-202ENST00000460469 FAM50AQ14320 339 aaKnown RBP25.3■■□□□ 1.64
NMD3-202ENST00000460469 KCNH8Q96L42 1107 aa25.29■■□□□ 1.64
NMD3-202ENST00000460469 RRBP1Q9P2E9 1410 aaKnown RBP25.28■■□□□ 1.64
NMD3-202ENST00000460469 SIN3AQ96ST3 1273 aa25.24■■□□□ 1.63
NMD3-202ENST00000460469 CARMIL1Q5VZK9 1371 aa25.23■■□□□ 1.63
NMD3-202ENST00000460469 RAB3GAP2Q9H2M9 1393 aa25.23■■□□□ 1.63
NMD3-202ENST00000460469 HIRIP3Q9BW71 556 aaPredicted RBP25.22■■□□□ 1.63
NMD3-202ENST00000460469 CLSPNQ9HAW4 1339 aa25.21■■□□□ 1.63
NMD3-202ENST00000460469 FGD5Q6ZNL6 1462 aa25.17■■□□□ 1.62
NMD3-202ENST00000460469 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
NMD3-202ENST00000460469 PHLDB1Q86UU1 1377 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms