RNA–Protein interactions for RNA: ENST00000458591.6

SCFD1-203, Transcript of sec1 family domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCFD1, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-203ENST00000458591 NISCHQ9Y2I1 1504 aa28.86■■■□□ 2.21
SCFD1-203ENST00000458591 SHROOM4Q9ULL8 1493 aa25.11■■□□□ 1.61
SCFD1-203ENST00000458591 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
SCFD1-203ENST00000458591 ZCCHC6Q5VYS8 1495 aaKnown RBP24.41■■□□□ 1.5
SCFD1-203ENST00000458591 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
SCFD1-203ENST00000458591 CCDC180Q9P1Z9 1646 aa24.23■■□□□ 1.47
SCFD1-203ENST00000458591 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
SCFD1-203ENST00000458591 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
SCFD1-203ENST00000458591 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
SCFD1-203ENST00000458591 PCGF6Q9BYE7 350 aa23.45■■□□□ 1.34
SCFD1-203ENST00000458591 LOC105371045A0A1W2PR82 267 aa23.41■■□□□ 1.34
SCFD1-203ENST00000458591 HRCP23327 699 aa23.41■■□□□ 1.34
SCFD1-203ENST00000458591 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
SCFD1-203ENST00000458591 SCRIBQ14160 1630 aa23.07■■□□□ 1.28
SCFD1-203ENST00000458591 ABCC9O60706 1549 aa23.03■■□□□ 1.28
SCFD1-203ENST00000458591 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
SCFD1-203ENST00000458591 FAM9AQ8IZU1 332 aaPredicted RBP22.86■■□□□ 1.25
SCFD1-203ENST00000458591 TRIM41Q8WV44 630 aa22.82■■□□□ 1.24
SCFD1-203ENST00000458591 EHMT2Q96KQ7 1210 aa22.82■■□□□ 1.24
SCFD1-203ENST00000458591 RB1CC1Q8TDY2 1594 aa22.78■■□□□ 1.24
SCFD1-203ENST00000458591 TRIM26Q12899 539 aaPredicted RBP22.78■■□□□ 1.24
SCFD1-203ENST00000458591 CECR2Q9BXF3 1484 aa22.69■■□□□ 1.22
SCFD1-203ENST00000458591 MROH2BQ7Z745 1585 aa22.56■■□□□ 1.2
SCFD1-203ENST00000458591 NACADO15069 1562 aa22.45■■□□□ 1.18
SCFD1-203ENST00000458591 WIZO95785 1651 aa22.43■■□□□ 1.18
SCFD1-203ENST00000458591 ZEB1P37275 1124 aaPredicted RBP22.19■■□□□ 1.14
SCFD1-203ENST00000458591 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.14
SCFD1-203ENST00000458591 TTBK1Q5TCY1 1321 aaPredicted RBP22.08■■□□□ 1.13
SCFD1-203ENST00000458591 EIF4G1Q04637 1599 aaKnown RBP22.07■■□□□ 1.12
SCFD1-203ENST00000458591 ABCC8Q09428 1581 aa22.06■■□□□ 1.12
SCFD1-203ENST00000458591 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.04■■□□□ 1.12
SCFD1-203ENST00000458591 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
SCFD1-203ENST00000458591 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
SCFD1-203ENST00000458591 PABPN1Q86U42 306 aaKnown RBP eCLIP21.94■■□□□ 1.13e-6■■■■□ 24.8
SCFD1-203ENST00000458591 SMARCA4P51532 1647 aa21.92■■□□□ 1.1
SCFD1-203ENST00000458591 SOGA1O94964 1423 aa21.92■■□□□ 1.1
SCFD1-203ENST00000458591 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
SCFD1-203ENST00000458591 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
SCFD1-203ENST00000458591 RUSC2Q8N2Y8 1516 aa21.85■■□□□ 1.09
SCFD1-203ENST00000458591 UNC13AQ9UPW8 1703 aa21.82■■□□□ 1.08
SCFD1-203ENST00000458591 CEP162Q5TB80 1403 aa21.79■■□□□ 1.08
SCFD1-203ENST00000458591 SCAF1Q9H7N4 1312 aaKnown RBP21.77■■□□□ 1.08
SCFD1-203ENST00000458591 UBTFP17480 764 aaKnown RBP21.76■■□□□ 1.07
SCFD1-203ENST00000458591 CSRNP3Q8WYN3 585 aa21.74■■□□□ 1.07
SCFD1-203ENST00000458591 TNIKQ9UKE5 1360 aa21.67■■□□□ 1.06
SCFD1-203ENST00000458591 WRNQ14191 1432 aaPredicted RBP eCLIP21.67■■□□□ 1.06
SCFD1-203ENST00000458591 BICRAQ9NZM4 1560 aa21.61■■□□□ 1.05
SCFD1-203ENST00000458591 PELP1Q8IZL8 1130 aaKnown RBP21.58■■□□□ 1.05
SCFD1-203ENST00000458591 RANGAP1P46060 587 aaPredicted RBP21.52■■□□□ 1.04
SCFD1-203ENST00000458591 DIEXFQ68CQ4 756 aaKnown RBP21.51■■□□□ 1.03
SCFD1-203ENST00000458591 EEA1Q15075 1411 aa21.51■■□□□ 1.03
SCFD1-203ENST00000458591 GOLGA3Q08378 1498 aa21.5■■□□□ 1.03
SCFD1-203ENST00000458591 NEUROD1Q13562 356 aa21.48■■□□□ 1.03
SCFD1-203ENST00000458591 SYNJ1O43426 1573 aa21.47■■□□□ 1.03
SCFD1-203ENST00000458591 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
SCFD1-203ENST00000458591 ACIN1Q9UKV3 1341 aaKnown RBP21.41■■□□□ 1.02
SCFD1-203ENST00000458591 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.01
SCFD1-203ENST00000458591 PEG3Q9GZU2 1588 aa21.38■■□□□ 1.01
SCFD1-203ENST00000458591 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
SCFD1-203ENST00000458591 CLIP1P30622 1438 aa21.34■■□□□ 1.01
SCFD1-203ENST00000458591 BAZ1BQ9UIG0 1483 aaKnown RBP21.32■■□□□ 1
SCFD1-203ENST00000458591 RAPGEF2Q9Y4G8 1499 aa21.32■■□□□ 1
SCFD1-203ENST00000458591 ZNF316A6NFI3 1004 aaPredicted RBP21.28■■□□□ 1
SCFD1-203ENST00000458591 GTF3C3Q9Y5Q9 886 aa21.25■□□□□ 0.99
SCFD1-203ENST00000458591 KIF21BO75037 1637 aa21.25■□□□□ 0.99
SCFD1-203ENST00000458591 VPS8Q8N3P4 1428 aa21.21■□□□□ 0.99
SCFD1-203ENST00000458591 APLP2Q06481 763 aa21.19■□□□□ 0.98
SCFD1-203ENST00000458591 YTHDC1Q96MU7 727 aaKnown RBP21.19■□□□□ 0.98
SCFD1-203ENST00000458591 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
SCFD1-203ENST00000458591 MIER1Q8N108 512 aa21.12■□□□□ 0.97
SCFD1-203ENST00000458591 TOP2BQ02880 1626 aa21.08■□□□□ 0.96
SCFD1-203ENST00000458591 KANK4Q5T7N3 995 aaPredicted RBP21.07■□□□□ 0.96
SCFD1-203ENST00000458591 ARAP1Q96P48 1450 aa20.98■□□□□ 0.95
SCFD1-203ENST00000458591 PRXQ9BXM0 1461 aa20.98■□□□□ 0.95
SCFD1-203ENST00000458591 CUX1P39880 1505 aa20.95■□□□□ 0.94
SCFD1-203ENST00000458591 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
SCFD1-203ENST00000458591 DHX57Q6P158 1386 aaKnown RBP20.89■□□□□ 0.93
SCFD1-203ENST00000458591 ITGAEP38570 1179 aa20.88■□□□□ 0.93
SCFD1-203ENST00000458591 NCAPD3P42695 1498 aa20.87■□□□□ 0.93
SCFD1-203ENST00000458591 ERICH3Q5RHP9 1530 aa20.87■□□□□ 0.93
SCFD1-203ENST00000458591 KIF27Q86VH2 1401 aa20.84■□□□□ 0.93
SCFD1-203ENST00000458591 HMGXB3Q12766 1538 aa20.79■□□□□ 0.92
SCFD1-203ENST00000458591 CFTRP13569 1480 aa20.78■□□□□ 0.92
SCFD1-203ENST00000458591 ARHGAP35Q9NRY4 1499 aa20.78■□□□□ 0.92
SCFD1-203ENST00000458591 RRBP1Q9P2E9 1410 aaKnown RBP20.72■□□□□ 0.91
SCFD1-203ENST00000458591 IGF1RP08069 1367 aa20.7■□□□□ 0.9
SCFD1-203ENST00000458591 CUX2O14529 1486 aa20.7■□□□□ 0.9
SCFD1-203ENST00000458591 CCNB3Q8WWL7 1395 aa20.69■□□□□ 0.9
SCFD1-203ENST00000458591 P3H3Q8IVL6 736 aa20.67■□□□□ 0.9
SCFD1-203ENST00000458591 CLSPNQ9HAW4 1339 aa20.67■□□□□ 0.9
SCFD1-203ENST00000458591 MYT1Q01538 1121 aa20.64■□□□□ 0.89
SCFD1-203ENST00000458591 ATP1B4Q9UN42 357 aaPredicted RBP20.6■□□□□ 0.89
SCFD1-203ENST00000458591 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
SCFD1-203ENST00000458591 RAB3GAP2Q9H2M9 1393 aa20.58■□□□□ 0.89
SCFD1-203ENST00000458591 CADPSQ9ULU8 1353 aa20.56■□□□□ 0.88
SCFD1-203ENST00000458591 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
SCFD1-203ENST00000458591 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
SCFD1-203ENST00000458591 KCNH8Q96L42 1107 aa20.54■□□□□ 0.88
SCFD1-203ENST00000458591 PHLDB1Q86UU1 1377 aa20.53■□□□□ 0.88
SCFD1-203ENST00000458591 SIN3AQ96ST3 1273 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms