RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CHIC1Q5VXU3 224 aa12.98□□□□□ -0.33
CCDC88A-209ENST00000456975 AEBP2Q6ZN18 517 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-209ENST00000456975 PHF23Q9BUL5 403 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-209ENST00000456975 PLPPR3Q6T4P5 718 aa10.82□□□□□ -0.68
CCDC88A-209ENST00000456975 EHMT2Q96KQ7 1210 aa10.6□□□□□ -0.71
CCDC88A-209ENST00000456975 SENP3Q9H4L4 574 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-209ENST00000456975 KCNA4P22459 653 aa10.37□□□□□ -0.75
CCDC88A-209ENST00000456975 ADRA2BP18089 450 aa10.34□□□□□ -0.75
CCDC88A-209ENST00000456975 PPP6R1Q9UPN7 881 aa10.09□□□□□ -0.79
CCDC88A-209ENST00000456975 CSRNP3Q8WYN3 585 aa10.06□□□□□ -0.8
CCDC88A-209ENST00000456975 SLC4A1APQ9BWU0 796 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-209ENST00000456975 FOXD1Q16676 465 aa9.81□□□□□ -0.84
CCDC88A-209ENST00000456975 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
CCDC88A-209ENST00000456975 PPP4R3CPQ6ZMV5 832 aa9.69□□□□□ -0.86
CCDC88A-209ENST00000456975 ZBTB22O15209 634 aa9.6□□□□□ -0.87
CCDC88A-209ENST00000456975 RTN4Q9NQC3 1192 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-209ENST00000456975 NPM3O75607 178 aaKnown RBP9.54□□□□□ -0.88
CCDC88A-209ENST00000456975 NCBP3Q53F19 620 aaKnown RBP9.51□□□□□ -0.89
CCDC88A-209ENST00000456975 PIAS4Q8N2W9 510 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-209ENST00000456975 AMER1Q5JTC6 1135 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-209ENST00000456975 POTEDQ86YR6 584 aa9.3□□□□□ -0.92
CCDC88A-209ENST00000456975 NISCHQ9Y2I1 1504 aa9.2□□□□□ -0.94
CCDC88A-209ENST00000456975 FOXD4L1Q9NU39 408 aa9.2□□□□□ -0.94
CCDC88A-209ENST00000456975 CNKSR2Q8WXI2 1034 aa9.19□□□□□ -0.94
CCDC88A-209ENST00000456975 FKBP8Q14318 412 aa9.05□□□□□ -0.96
CCDC88A-209ENST00000456975 MAPK8IP2Q13387 824 aaPredicted RBP9□□□□□ -0.97
CCDC88A-209ENST00000456975 SCAF1Q9H7N4 1312 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-209ENST00000456975 DNAJC5BQ9UF47 199 aa8.89□□□□□ -0.99
CCDC88A-209ENST00000456975 SLC4A2P04920 1241 aa8.86□□□□□ -0.99
CCDC88A-209ENST00000456975 RNF216Q9NWF9 866 aaPredicted RBP8.82□□□□□ -1
CCDC88A-209ENST00000456975 MYT1Q01538 1121 aa8.8□□□□□ -1
CCDC88A-209ENST00000456975 PRKCSHP14314 528 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-209ENST00000456975 PELP1Q8IZL8 1130 aaKnown RBP8.71□□□□□ -1.02
CCDC88A-209ENST00000456975 ATXN8OSP0DMR3 200 aa8.7□□□□□ -1.02
CCDC88A-209ENST00000456975 MYCNP04198 464 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-209ENST00000456975 TTBK1Q5TCY1 1321 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-209ENST00000456975 PLCB2Q00722 1185 aa8.67□□□□□ -1.02
CCDC88A-209ENST00000456975 ABCC9O60706 1549 aa8.67□□□□□ -1.02
CCDC88A-209ENST00000456975 ATF5Q9Y2D1 282 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-209ENST00000456975 HAP1P54257 671 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-209ENST00000456975 HOXD11P31277 338 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-209ENST00000456975 MSH5O43196 834 aa8.6□□□□□ -1.03
CCDC88A-209ENST00000456975 DAXXQ9UER7 740 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-209ENST00000456975 TAOK2Q9UL54 1235 aa8.53□□□□□ -1.04
CCDC88A-209ENST00000456975 DMRT2Q9Y5R5 561 aa8.53□□□□□ -1.04
CCDC88A-209ENST00000456975 DCAF8L2P0C7V8 631 aa8.52□□□□□ -1.05
CCDC88A-209ENST00000456975 BCANQ96GW7 911 aa8.51□□□□□ -1.05
CCDC88A-209ENST00000456975 APLP2Q06481 763 aa8.49□□□□□ -1.05
CCDC88A-209ENST00000456975 TPRNQ4KMQ1 711 aa8.44□□□□□ -1.06
CCDC88A-209ENST00000456975 CCDC180Q9P1Z9 1646 aa8.43□□□□□ -1.06
CCDC88A-209ENST00000456975 ERICH6Q7L0X2 663 aa8.42□□□□□ -1.06
CCDC88A-209ENST00000456975 KDM2AQ9Y2K7 1162 aa8.37□□□□□ -1.07
CCDC88A-209ENST00000456975 FBLN2P98095 1184 aa8.36□□□□□ -1.07
CCDC88A-209ENST00000456975 VSIG10Q8N0Z9 540 aa8.35□□□□□ -1.07
CCDC88A-209ENST00000456975 IFNLR1Q8IU57 520 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-209ENST00000456975 FBXO3Q9UK99 471 aa8.35□□□□□ -1.07
CCDC88A-209ENST00000456975 VASPP50552 380 aaPredicted RBP8.33□□□□□ -1.08
CCDC88A-209ENST00000456975 PKD2Q13563 968 aa8.33□□□□□ -1.08
CCDC88A-209ENST00000456975 SPDYE4A6NLX3 237 aa8.31□□□□□ -1.08
CCDC88A-209ENST00000456975 DCAF8L1A6NGE4 600 aa8.27□□□□□ -1.08
CCDC88A-209ENST00000456975 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.27□□□□□ -1.081e-6■■■□□ 18.2
CCDC88A-209ENST00000456975 U3KPZ7 1027 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-209ENST00000456975 SAMD1Q6SPF0 538 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-209ENST00000456975 ZNF219Q9P2Y4 722 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-209ENST00000456975 PAXIP1Q6ZW49 1069 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-209ENST00000456975 CFAP44Q96MT7 982 aa8.24□□□□□ -1.09
CCDC88A-209ENST00000456975 NPM1P06748 294 aaKnown RBP eCLIP8.23□□□□□ -1.09
CCDC88A-209ENST00000456975 TIMELESSQ9UNS1 1208 aa8.22□□□□□ -1.09
CCDC88A-209ENST00000456975 MKRN4PQ13434 485 aaPredicted RBP8.21□□□□□ -1.09
CCDC88A-209ENST00000456975 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.19□□□□□ -1.1
CCDC88A-209ENST00000456975 HNRNPUL2Q1KMD3 747 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-209ENST00000456975 PROM2Q8N271 834 aa8.19□□□□□ -1.1
CCDC88A-209ENST00000456975 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-209ENST00000456975 TULP1O00294 542 aaPredicted RBP8.17□□□□□ -1.1
CCDC88A-209ENST00000456975 BBXQ8WY36 941 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-209ENST00000456975 TSHZ2Q9NRE2 1034 aa8.16□□□□□ -1.1
CCDC88A-209ENST00000456975 RB1CC1Q8TDY2 1594 aa8.14□□□□□ -1.11
CCDC88A-209ENST00000456975 ECM2O94769 699 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-209ENST00000456975 RGL2O15211 777 aa8.08□□□□□ -1.12
CCDC88A-209ENST00000456975 KLHL34Q8N239 644 aa8.06□□□□□ -1.12
CCDC88A-209ENST00000456975 UNC13AQ9UPW8 1703 aa8.06□□□□□ -1.12
CCDC88A-209ENST00000456975 SPRYD3Q8NCJ5 442 aa8.05□□□□□ -1.12
CCDC88A-209ENST00000456975 GTF3C3Q9Y5Q9 886 aa8.03□□□□□ -1.12
CCDC88A-209ENST00000456975 SPOCK2Q92563 424 aa8.01□□□□□ -1.13
CCDC88A-209ENST00000456975 NBR1Q14596 966 aa7.99□□□□□ -1.13
CCDC88A-209ENST00000456975 NACADO15069 1562 aa7.98□□□□□ -1.13
CCDC88A-209ENST00000456975 CHGAP10645 457 aaKnown RBP7.98□□□□□ -1.13
CCDC88A-209ENST00000456975 EIF5BO60841 1220 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-209ENST00000456975 PABPN1Q86U42 306 aaKnown RBP eCLIP7.95□□□□□ -1.14
CCDC88A-209ENST00000456975 ARXQ96QS3 562 aa7.95□□□□□ -1.14
CCDC88A-209ENST00000456975 POLA2Q14181 598 aa7.94□□□□□ -1.14
CCDC88A-209ENST00000456975 TRHP20396 242 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-209ENST00000456975 DNAJC5Q9H3Z4 198 aa7.89□□□□□ -1.15
CCDC88A-209ENST00000456975 SPINK5Q9NQ38 1064 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-209ENST00000456975 BICRAQ9NZM4 1560 aa7.89□□□□□ -1.15
CCDC88A-209ENST00000456975 PLCD3Q8N3E9 789 aa7.88□□□□□ -1.15
CCDC88A-209ENST00000456975 CIZ1Q9ULV3 898 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-209ENST00000456975 TMEM132AQ24JP5 1023 aa7.86□□□□□ -1.15
CCDC88A-209ENST00000456975 CC2D2AQ9P2K1 1620 aa7.85□□□□□ -1.15
CCDC88A-209ENST00000456975 BCL11AQ9H165 835 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms