RNA–Protein interactions for RNA: ENST00000454591.6

ECHDC1-209, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2 BASIC

Gene ECHDC1, Length 1,515 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-209ENST00000454591 NISCHQ9Y2I1 1504 aa26.66■■□□□ 1.86
ECHDC1-209ENST00000454591 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
ECHDC1-209ENST00000454591 ZCCHC6Q5VYS8 1495 aaKnown RBP22.58■■□□□ 1.21
ECHDC1-209ENST00000454591 AEBP2Q6ZN18 517 aaPredicted RBP22.22■■□□□ 1.15
ECHDC1-209ENST00000454591 DCAF1Q9Y4B6 1507 aa22.15■■□□□ 1.14
ECHDC1-209ENST00000454591 SHROOM4Q9ULL8 1493 aa22.06■■□□□ 1.12
ECHDC1-209ENST00000454591 MYO15BQ96JP2 1530 aa21.61■■□□□ 1.05
ECHDC1-209ENST00000454591 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
ECHDC1-209ENST00000454591 DCAF8L2P0C7V8 631 aa21.45■■□□□ 1.02
ECHDC1-209ENST00000454591 ABCC9O60706 1549 aa21.3■■□□□ 1
ECHDC1-209ENST00000454591 CHIC1Q5VXU3 224 aa21.23■□□□□ 0.99
ECHDC1-209ENST00000454591 NACADO15069 1562 aa21.16■□□□□ 0.98
ECHDC1-209ENST00000454591 SCRIBQ14160 1630 aa21.08■□□□□ 0.96
ECHDC1-209ENST00000454591 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.94
ECHDC1-209ENST00000454591 RB1CC1Q8TDY2 1594 aa20.83■□□□□ 0.93
ECHDC1-209ENST00000454591 CECR2Q9BXF3 1484 aa20.6■□□□□ 0.89
ECHDC1-209ENST00000454591 MROH2BQ7Z745 1585 aa20.6■□□□□ 0.89
ECHDC1-209ENST00000454591 BAZ1AQ9NRL2 1556 aaPredicted RBP20.53■□□□□ 0.88
ECHDC1-209ENST00000454591 WIZO95785 1651 aa20.47■□□□□ 0.87
ECHDC1-209ENST00000454591 UNC13AQ9UPW8 1703 aa20.44■□□□□ 0.86
ECHDC1-209ENST00000454591 EIF4G1Q04637 1599 aaKnown RBP20.39■□□□□ 0.86
ECHDC1-209ENST00000454591 HRCP23327 699 aa20.38■□□□□ 0.85
ECHDC1-209ENST00000454591 SMARCA4P51532 1647 aa20.34■□□□□ 0.85
ECHDC1-209ENST00000454591 LOC105371045A0A1W2PR82 267 aa20.34■□□□□ 0.85
ECHDC1-209ENST00000454591 TOP2AP11388 1531 aaKnown RBP20.32■□□□□ 0.84
ECHDC1-209ENST00000454591 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
ECHDC1-209ENST00000454591 PCGF6Q9BYE7 350 aa20.2■□□□□ 0.82
ECHDC1-209ENST00000454591 BICRAQ9NZM4 1560 aa20.17■□□□□ 0.82
ECHDC1-209ENST00000454591 SMARCA2P51531 1590 aa20.15■□□□□ 0.82
ECHDC1-209ENST00000454591 PEG3Q9GZU2 1588 aa20.14■□□□□ 0.81
ECHDC1-209ENST00000454591 TRIM26Q12899 539 aaPredicted RBP20.12■□□□□ 0.81
ECHDC1-209ENST00000454591 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.8
ECHDC1-209ENST00000454591 EEA1Q15075 1411 aa19.88■□□□□ 0.77
ECHDC1-209ENST00000454591 ABCC8Q09428 1581 aa19.86■□□□□ 0.77
ECHDC1-209ENST00000454591 FAM9AQ8IZU1 332 aaPredicted RBP19.86■□□□□ 0.77
ECHDC1-209ENST00000454591 ATAD2BQ9ULI0 1458 aa19.79■□□□□ 0.76
ECHDC1-209ENST00000454591 ZEB1P37275 1124 aaPredicted RBP19.76■□□□□ 0.75
ECHDC1-209ENST00000454591 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
ECHDC1-209ENST00000454591 PABPN1Q86U42 306 aaKnown RBP eCLIP19.71■□□□□ 0.75
ECHDC1-209ENST00000454591 TNIKQ9UKE5 1360 aa19.68■□□□□ 0.74
ECHDC1-209ENST00000454591 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
ECHDC1-209ENST00000454591 SOGA1O94964 1423 aa19.64■□□□□ 0.74
ECHDC1-209ENST00000454591 PPARGC1BQ86YN6 1023 aaKnown RBP19.64■□□□□ 0.73
ECHDC1-209ENST00000454591 KIF21BO75037 1637 aa19.59■□□□□ 0.73
ECHDC1-209ENST00000454591 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
ECHDC1-209ENST00000454591 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
ECHDC1-209ENST00000454591 CEP162Q5TB80 1403 aa19.58■□□□□ 0.73
ECHDC1-209ENST00000454591 GOLGA3Q08378 1498 aa19.58■□□□□ 0.72
ECHDC1-209ENST00000454591 CSRNP3Q8WYN3 585 aa19.57■□□□□ 0.72
ECHDC1-209ENST00000454591 RUSC2Q8N2Y8 1516 aa19.53■□□□□ 0.72
ECHDC1-209ENST00000454591 NCAPD3P42695 1498 aa19.52■□□□□ 0.72
ECHDC1-209ENST00000454591 CEP164Q9UPV0 1460 aa19.51■□□□□ 0.71
ECHDC1-209ENST00000454591 TOP2BQ02880 1626 aa19.5■□□□□ 0.71
ECHDC1-209ENST00000454591 BIVM-ERCC5R4GMW8 1640 aa19.5■□□□□ 0.71
ECHDC1-209ENST00000454591 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
ECHDC1-209ENST00000454591 PRDM2Q13029 1718 aa19.33■□□□□ 0.68
ECHDC1-209ENST00000454591 ERICH3Q5RHP9 1530 aa19.31■□□□□ 0.68
ECHDC1-209ENST00000454591 UBTFP17480 764 aaKnown RBP19.29■□□□□ 0.68
ECHDC1-209ENST00000454591 SENP3Q9H4L4 574 aaPredicted RBP19.29■□□□□ 0.68
ECHDC1-209ENST00000454591 CFTRP13569 1480 aa19.28■□□□□ 0.68
ECHDC1-209ENST00000454591 CLIP1P30622 1438 aa19.25■□□□□ 0.67
ECHDC1-209ENST00000454591 VPS8Q8N3P4 1428 aa19.24■□□□□ 0.67
ECHDC1-209ENST00000454591 PRXQ9BXM0 1461 aa19.23■□□□□ 0.67
ECHDC1-209ENST00000454591 RAPGEF2Q9Y4G8 1499 aa19.22■□□□□ 0.67
ECHDC1-209ENST00000454591 CUX1P39880 1505 aa19.22■□□□□ 0.67
ECHDC1-209ENST00000454591 KIF27Q86VH2 1401 aa19.1■□□□□ 0.65
ECHDC1-209ENST00000454591 CCER1Q8TC90 406 aaPredicted RBP19.1■□□□□ 0.65
ECHDC1-209ENST00000454591 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.09■□□□□ 0.65
ECHDC1-209ENST00000454591 ARAP1Q96P48 1450 aa19.02■□□□□ 0.64
ECHDC1-209ENST00000454591 CADPSQ9ULU8 1353 aa19.01■□□□□ 0.63
ECHDC1-209ENST00000454591 POTEDQ86YR6 584 aa18.95■□□□□ 0.62
ECHDC1-209ENST00000454591 CC2D2AQ9P2K1 1620 aa18.94■□□□□ 0.62
ECHDC1-209ENST00000454591 APLP2Q06481 763 aa18.9■□□□□ 0.62
ECHDC1-209ENST00000454591 MAP3K1Q13233 1512 aa18.87■□□□□ 0.61
ECHDC1-209ENST00000454591 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
ECHDC1-209ENST00000454591 IGF1RP08069 1367 aa18.86■□□□□ 0.61
ECHDC1-209ENST00000454591 FGD5Q6ZNL6 1462 aa18.86■□□□□ 0.61
ECHDC1-209ENST00000454591 TTBK1Q5TCY1 1321 aaPredicted RBP18.85■□□□□ 0.61
ECHDC1-209ENST00000454591 CUX2O14529 1486 aa18.85■□□□□ 0.61
ECHDC1-209ENST00000454591 RRBP1Q9P2E9 1410 aaKnown RBP18.84■□□□□ 0.61
ECHDC1-209ENST00000454591 DNMBPQ6XZF7 1577 aa18.83■□□□□ 0.6
ECHDC1-209ENST00000454591 CLSPNQ9HAW4 1339 aa18.81■□□□□ 0.6
ECHDC1-209ENST00000454591 FANCD2Q9BXW9 1451 aa18.8■□□□□ 0.6
ECHDC1-209ENST00000454591 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
ECHDC1-209ENST00000454591 ABCA10Q8WWZ4 1543 aa18.77■□□□□ 0.6
ECHDC1-209ENST00000454591 CARMIL1Q5VZK9 1371 aa18.75■□□□□ 0.59
ECHDC1-209ENST00000454591 LAMC3Q9Y6N6 1575 aa18.73■□□□□ 0.59
ECHDC1-209ENST00000454591 CUL7Q14999 1698 aa18.72■□□□□ 0.59
ECHDC1-209ENST00000454591 TIAM1Q13009 1591 aa18.71■□□□□ 0.59
ECHDC1-209ENST00000454591 TOPBP1Q92547 1522 aa18.71■□□□□ 0.59
ECHDC1-209ENST00000454591 HNRNPUL2Q1KMD3 747 aaKnown RBP18.71■□□□□ 0.59
ECHDC1-209ENST00000454591 DIEXFQ68CQ4 756 aaKnown RBP18.71■□□□□ 0.59
ECHDC1-209ENST00000454591 ZNF316A6NFI3 1004 aaPredicted RBP18.7■□□□□ 0.58
ECHDC1-209ENST00000454591 WDR97A6NE52 1622 aa18.7■□□□□ 0.58
ECHDC1-209ENST00000454591 CFAP43Q8NDM7 1665 aa18.68■□□□□ 0.58
ECHDC1-209ENST00000454591 KANK4Q5T7N3 995 aaPredicted RBP18.67■□□□□ 0.58
ECHDC1-209ENST00000454591 POLA1P09884 1462 aaPredicted RBP18.67■□□□□ 0.58
ECHDC1-209ENST00000454591 EFCAB5A4FU69 1503 aa18.66■□□□□ 0.58
ECHDC1-209ENST00000454591 FHAD1B1AJZ9 1412 aa18.65■□□□□ 0.58
ECHDC1-209ENST00000454591 DHX57Q6P158 1386 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms