RNA–Protein interactions for RNA: ENST00000453553.1

USP25-206, Transcript of ubiquitin specific peptidase 25, humanhuman

TSL 3

Gene USP25, Length 611 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP25-206ENST00000453553 AEBP2Q6ZN18 517 aaPredicted RBP26.04■■□□□ 1.76
USP25-206ENST00000453553 CHIC1Q5VXU3 224 aa24.36■■□□□ 1.49
USP25-206ENST00000453553 SENP3Q9H4L4 574 aaPredicted RBP22.14■■□□□ 1.13
USP25-206ENST00000453553 PHF23Q9BUL5 403 aaPredicted RBP21.87■■□□□ 1.09
USP25-206ENST00000453553 FOXD1Q16676 465 aa20.76■□□□□ 0.91
USP25-206ENST00000453553 POTEDQ86YR6 584 aa19.6■□□□□ 0.73
USP25-206ENST00000453553 MSH5O43196 834 aa19.45■□□□□ 0.7
USP25-206ENST00000453553 PLPPR3Q6T4P5 718 aa19.27■□□□□ 0.68
USP25-206ENST00000453553 PIAS4Q8N2W9 510 aaPredicted RBP19.27■□□□□ 0.68
USP25-206ENST00000453553 PPP6R1Q9UPN7 881 aa19.22■□□□□ 0.67
USP25-206ENST00000453553 ADRA2BP18089 450 aa19.11■□□□□ 0.65
USP25-206ENST00000453553 MAPK8IP2Q13387 824 aaPredicted RBP17.67■□□□□ 0.42
USP25-206ENST00000453553 DMRT2Q9Y5R5 561 aa17.55■□□□□ 0.4
USP25-206ENST00000453553 SCAF1Q9H7N4 1312 aaKnown RBP17.35■□□□□ 0.37
USP25-206ENST00000453553 CACNB1Q02641 598 aaPredicted RBP16.9■□□□□ 0.3
USP25-206ENST00000453553 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
USP25-206ENST00000453553 DCAF8L1A6NGE4 600 aa16.81■□□□□ 0.28
USP25-206ENST00000453553 HOXD11P31277 338 aaPredicted RBP16.78■□□□□ 0.28
USP25-206ENST00000453553 RNF39Q9H2S5 420 aa16.63■□□□□ 0.25
USP25-206ENST00000453553 CNKSR2Q8WXI2 1034 aa16.62■□□□□ 0.25
USP25-206ENST00000453553 RNF216Q9NWF9 866 aaPredicted RBP16.55■□□□□ 0.24
USP25-206ENST00000453553 KCNA4P22459 653 aa16.53■□□□□ 0.24
USP25-206ENST00000453553 NCBP3Q53F19 620 aaKnown RBP16.33■□□□□ 0.2
USP25-206ENST00000453553 C1QBPQ07021 282 aaKnown RBP16.31■□□□□ 0.2
USP25-206ENST00000453553 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
USP25-206ENST00000453553 NPM3O75607 178 aaKnown RBP16.08■□□□□ 0.16
USP25-206ENST00000453553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.95■□□□□ 0.147e-9■■■□□ 15.8
USP25-206ENST00000453553 SLC4A1APQ9BWU0 796 aaKnown RBP15.78■□□□□ 0.12
USP25-206ENST00000453553 U3KPZ7 1027 aaPredicted RBP15.64■□□□□ 0.09
USP25-206ENST00000453553 EHMT2Q96KQ7 1210 aa15.53■□□□□ 0.08
USP25-206ENST00000453553 SPINK5Q9NQ38 1064 aaPredicted RBP15.53■□□□□ 0.08
USP25-206ENST00000453553 DSG3P32926 999 aa15.48■□□□□ 0.07
USP25-206ENST00000453553 CAPN15O75808 1086 aa15.45■□□□□ 0.06
USP25-206ENST00000453553 SLC4A2P04920 1241 aa15.33■□□□□ 0.04
USP25-206ENST00000453553 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
USP25-206ENST00000453553 POTEHQ6S545 545 aa15.27■□□□□ 0.04
USP25-206ENST00000453553 ZBTB22O15209 634 aa15.2■□□□□ 0.02
USP25-206ENST00000453553 FOXD4L1Q9NU39 408 aa15.16■□□□□ 0.02
USP25-206ENST00000453553 TRHP20396 242 aaPredicted RBP15.14■□□□□ 0.01
USP25-206ENST00000453553 ABCB7O75027 752 aa15.1■□□□□ 0.01
USP25-206ENST00000453553 ZNF219Q9P2Y4 722 aaPredicted RBP15.05■□□□□ -0
USP25-206ENST00000453553 APLP2Q06481 763 aa15.02■□□□□ -0
USP25-206ENST00000453553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
USP25-206ENST00000453553 HNRNPUL2Q1KMD3 747 aaKnown RBP14.97□□□□□ -0.01
USP25-206ENST00000453553 SAMD1Q6SPF0 538 aaPredicted RBP14.89□□□□□ -0.03
USP25-206ENST00000453553 MYCNP04198 464 aaPredicted RBP14.85□□□□□ -0.03
USP25-206ENST00000453553 POLA2Q14181 598 aa14.68□□□□□ -0.06
USP25-206ENST00000453553 RBM42Q9BTD8 480 aaKnown RBP14.67□□□□□ -0.06
USP25-206ENST00000453553 ATXN8OSP0DMR3 200 aa14.63□□□□□ -0.07
USP25-206ENST00000453553 CHRDL2Q6WN34 429 aa14.54□□□□□ -0.08
USP25-206ENST00000453553 ATF5Q9Y2D1 282 aaPredicted RBP14.49□□□□□ -0.09
USP25-206ENST00000453553 AKT1S1Q96B36 256 aa14.31□□□□□ -0.12
USP25-206ENST00000453553 ZBTB12Q9Y330 459 aaPredicted RBP14.25□□□□□ -0.13
USP25-206ENST00000453553 REM2Q8IYK8 340 aaPredicted RBP14.22□□□□□ -0.13
USP25-206ENST00000453553 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
USP25-206ENST00000453553 PIP4P2Q8N4L2 257 aa14.16□□□□□ -0.14
USP25-206ENST00000453553 SP7Q8TDD2 431 aaPredicted RBP14.16□□□□□ -0.14
USP25-206ENST00000453553 PITPNM1O00562 1244 aa14.08□□□□□ -0.16
USP25-206ENST00000453553 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP25-206ENST00000453553 HAX1O00165 279 aa13.95□□□□□ -0.18
USP25-206ENST00000453553 EVX2Q03828 476 aa13.86□□□□□ -0.19
USP25-206ENST00000453553 SPDYE2BA6NHP3 402 aa13.84□□□□□ -0.19
USP25-206ENST00000453553 SPDYE6P0CI01 402 aa13.84□□□□□ -0.19
USP25-206ENST00000453553 SPDYE2Q495Y8 402 aa13.84□□□□□ -0.19
USP25-206ENST00000453553 MKRN4PQ13434 485 aaPredicted RBP13.83□□□□□ -0.2
USP25-206ENST00000453553 FBLN2P98095 1184 aa13.82□□□□□ -0.2
USP25-206ENST00000453553 FKBP8Q14318 412 aa13.81□□□□□ -0.2
USP25-206ENST00000453553 PRKAR2AP13861 404 aaKnown RBP13.69□□□□□ -0.22
USP25-206ENST00000453553 CLEC11AQ9Y240 323 aa13.69□□□□□ -0.22
USP25-206ENST00000453553 SPDYE1Q8NFV5 336 aaPredicted RBP13.66□□□□□ -0.22
USP25-206ENST00000453553 SSUH2Q9Y2M2 353 aa13.66□□□□□ -0.22
USP25-206ENST00000453553 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
USP25-206ENST00000453553 SPDYE4A6NLX3 237 aa13.61□□□□□ -0.23
USP25-206ENST00000453553 C19orf67A6NJJ6 358 aa13.58□□□□□ -0.24
USP25-206ENST00000453553 CHADLQ6NUI6 762 aa13.51□□□□□ -0.25
USP25-206ENST00000453553 GABBR2O75899 941 aa13.47□□□□□ -0.25
USP25-206ENST00000453553 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
USP25-206ENST00000453553 PROM2Q8N271 834 aa13.42□□□□□ -0.26
USP25-206ENST00000453553 PRR29P0C7W0 189 aa13.41□□□□□ -0.26
USP25-206ENST00000453553 LHX8Q68G74 356 aa13.28□□□□□ -0.28
USP25-206ENST00000453553 FBXO3Q9UK99 471 aa13.28□□□□□ -0.28
USP25-206ENST00000453553 FARP1Q9Y4F1 1045 aaPredicted RBP13.24□□□□□ -0.29
USP25-206ENST00000453553 POTEIP0CG38 1075 aa13.23□□□□□ -0.29
USP25-206ENST00000453553 CD44P16070 742 aaKnown RBP13.22□□□□□ -0.29
USP25-206ENST00000453553 STAG3Q9UJ98 1225 aa13.09□□□□□ -0.31
USP25-206ENST00000453553 VASPP50552 380 aaPredicted RBP13.07□□□□□ -0.32
USP25-206ENST00000453553 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
USP25-206ENST00000453553 CLCN6P51797 869 aa13.03□□□□□ -0.32
USP25-206ENST00000453553 ZNF579Q8NAF0 562 aaKnown RBP13.01□□□□□ -0.33
USP25-206ENST00000453553 ZRANB1Q9UGI0 708 aa13□□□□□ -0.33
USP25-206ENST00000453553 DCBLD2Q96PD2 775 aa12.97□□□□□ -0.33
USP25-206ENST00000453553 AMER1Q5JTC6 1135 aaPredicted RBP12.93□□□□□ -0.34
USP25-206ENST00000453553 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
USP25-206ENST00000453553 IFNLR1Q8IU57 520 aaPredicted RBP12.92□□□□□ -0.34
USP25-206ENST00000453553 MIER1Q8N108 512 aa12.9□□□□□ -0.34
USP25-206ENST00000453553 PLCD3Q8N3E9 789 aa12.89□□□□□ -0.35
USP25-206ENST00000453553 RTN4Q9NQC3 1192 aaKnown RBP12.89□□□□□ -0.35
USP25-206ENST00000453553 PHF12Q96QT6 1004 aa12.83□□□□□ -0.36
USP25-206ENST00000453553 MNX1P50219 401 aaPredicted RBP12.82□□□□□ -0.36
USP25-206ENST00000453553 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms