RNA–Protein interactions for RNA: ENST00000453091.6

RIF1-206, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 8,053 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-206ENST00000453091 DCAF8L2P0C7V8 631 aa13.78□□□□□ -0.2
RIF1-206ENST00000453091 SUPT5HO00267 1087 aaKnown RBP13.15□□□□□ -0.3
RIF1-206ENST00000453091 SHROOM4Q9ULL8 1493 aa13.05□□□□□ -0.32
RIF1-206ENST00000453091 EHMT2Q96KQ7 1210 aa13.05□□□□□ -0.32
RIF1-206ENST00000453091 NISCHQ9Y2I1 1504 aa12.77□□□□□ -0.37
RIF1-206ENST00000453091 TTBK1Q5TCY1 1321 aaPredicted RBP12.53□□□□□ -0.4
RIF1-206ENST00000453091 PCGF6Q9BYE7 350 aa12.52□□□□□ -0.41
RIF1-206ENST00000453091 FAM9AQ8IZU1 332 aaPredicted RBP12.49□□□□□ -0.41
RIF1-206ENST00000453091 RANGAP1P46060 587 aaPredicted RBP12.31□□□□□ -0.44
RIF1-206ENST00000453091 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
RIF1-206ENST00000453091 YTHDC1Q96MU7 727 aaKnown RBP12.1□□□□□ -0.47
RIF1-206ENST00000453091 CCER1Q8TC90 406 aaPredicted RBP12.01□□□□□ -0.49
RIF1-206ENST00000453091 PELP1Q8IZL8 1130 aaKnown RBP11.96□□□□□ -0.49
RIF1-206ENST00000453091 APLP2Q06481 763 aa11.96□□□□□ -0.49
RIF1-206ENST00000453091 TRIM41Q8WV44 630 aa11.93□□□□□ -0.5
RIF1-206ENST00000453091 ATP1B4Q9UN42 357 aaPredicted RBP11.93□□□□□ -0.5
RIF1-206ENST00000453091 LOC105371045A0A1W2PR82 267 aa11.92□□□□□ -0.5
RIF1-206ENST00000453091 HRCP23327 699 aa11.91□□□□□ -0.5
RIF1-206ENST00000453091 CENPBP07199 599 aaPredicted RBP11.9□□□□□ -0.5
RIF1-206ENST00000453091 ZEB1P37275 1124 aaPredicted RBP11.81□□□□□ -0.52
RIF1-206ENST00000453091 UBTFP17480 764 aaKnown RBP11.78□□□□□ -0.52
RIF1-206ENST00000453091 ERICH6Q7L0X2 663 aa11.77□□□□□ -0.53
RIF1-206ENST00000453091 TRIM26Q12899 539 aaPredicted RBP11.72□□□□□ -0.53
RIF1-206ENST00000453091 CHIC1Q5VXU3 224 aa11.72□□□□□ -0.53
RIF1-206ENST00000453091 ITGAEP38570 1179 aa11.65□□□□□ -0.54
RIF1-206ENST00000453091 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.64□□□□□ -0.55
RIF1-206ENST00000453091 HNRNPUL2Q1KMD3 747 aaKnown RBP11.6□□□□□ -0.55
RIF1-206ENST00000453091 CNGB1Q14028 1251 aaPredicted RBP11.59□□□□□ -0.55
RIF1-206ENST00000453091 NEFLP07196 543 aa11.53□□□□□ -0.56
RIF1-206ENST00000453091 MYT1Q01538 1121 aa11.51□□□□□ -0.57
RIF1-206ENST00000453091 PABPN1Q86U42 306 aaKnown RBP eCLIP11.47□□□□□ -0.57
RIF1-206ENST00000453091 POLR3GLQ9BT43 218 aa11.46□□□□□ -0.58
RIF1-206ENST00000453091 BCANQ96GW7 911 aa11.46□□□□□ -0.58
RIF1-206ENST00000453091 GTF3C3Q9Y5Q9 886 aa11.45□□□□□ -0.58
RIF1-206ENST00000453091 DIEXFQ68CQ4 756 aaKnown RBP11.44□□□□□ -0.58
RIF1-206ENST00000453091 MYT1LQ9UL68 1186 aa11.3□□□□□ -0.6
RIF1-206ENST00000453091 ABCC9O60706 1549 aa11.27□□□□□ -0.6
RIF1-206ENST00000453091 NEUROD1Q13562 356 aa11.23□□□□□ -0.61
RIF1-206ENST00000453091 ARID3CA6NKF2 412 aa11.23□□□□□ -0.61
RIF1-206ENST00000453091 ACIN1Q9UKV3 1341 aaKnown RBP11.21□□□□□ -0.61
RIF1-206ENST00000453091 FAM50AQ14320 339 aaKnown RBP11.19□□□□□ -0.62
RIF1-206ENST00000453091 P3H3Q8IVL6 736 aa11.16□□□□□ -0.62
RIF1-206ENST00000453091 SCAF1Q9H7N4 1312 aaKnown RBP11.14□□□□□ -0.63
RIF1-206ENST00000453091 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
RIF1-206ENST00000453091 DAXXQ9UER7 740 aaPredicted RBP11.1□□□□□ -0.63
RIF1-206ENST00000453091 SLC4A1APQ9BWU0 796 aaKnown RBP11.09□□□□□ -0.63
RIF1-206ENST00000453091 TRIM52Q96A61 297 aa11.08□□□□□ -0.64
RIF1-206ENST00000453091 ZNF326Q5BKZ1 582 aaKnown RBP11.07□□□□□ -0.64
RIF1-206ENST00000453091 FBLN2P98095 1184 aa11.04□□□□□ -0.64
RIF1-206ENST00000453091 RTL5Q5HYW3 569 aaPredicted RBP11.01□□□□□ -0.65
RIF1-206ENST00000453091 MYO15BQ96JP2 1530 aa10.99□□□□□ -0.65
RIF1-206ENST00000453091 FKBP8Q14318 412 aa10.97□□□□□ -0.65
RIF1-206ENST00000453091 CLSPNQ9HAW4 1339 aa10.96□□□□□ -0.66
RIF1-206ENST00000453091 ANP32CO43423 234 aa10.95□□□□□ -0.66
RIF1-206ENST00000453091 BCL11AQ9H165 835 aa10.95□□□□□ -0.66
RIF1-206ENST00000453091 NPM2Q86SE8 214 aaKnown RBP10.93□□□□□ -0.66
RIF1-206ENST00000453091 CDK11AQ9UQ88 783 aaPredicted RBP10.92□□□□□ -0.66
RIF1-206ENST00000453091 MIER1Q8N108 512 aa10.92□□□□□ -0.66
RIF1-206ENST00000453091 HIRIP3Q9BW71 556 aaPredicted RBP10.91□□□□□ -0.66
RIF1-206ENST00000453091 IRX6P78412 446 aaPredicted RBP10.91□□□□□ -0.66
RIF1-206ENST00000453091 ZNF777Q9ULD5 760 aaPredicted RBP10.88□□□□□ -0.67
RIF1-206ENST00000453091 SENP3-EIF4A1A0A087X0R7 540 aa10.88□□□□□ -0.67
RIF1-206ENST00000453091 DDX10Q13206 875 aaKnown RBP10.87□□□□□ -0.67
RIF1-206ENST00000453091 CSRNP3Q8WYN3 585 aa10.86□□□□□ -0.67
RIF1-206ENST00000453091 SENP3Q9H4L4 574 aaPredicted RBP10.85□□□□□ -0.67
RIF1-206ENST00000453091 SALL2Q9Y467 1007 aaPredicted RBP10.82□□□□□ -0.68
RIF1-206ENST00000453091 NBR1Q14596 966 aa10.81□□□□□ -0.68
RIF1-206ENST00000453091 PLPPR3Q6T4P5 718 aa10.81□□□□□ -0.68
RIF1-206ENST00000453091 FAM9BQ8IZU0 186 aa10.8□□□□□ -0.68
RIF1-206ENST00000453091 CHIC2Q9UKJ5 165 aa10.79□□□□□ -0.68
RIF1-206ENST00000453091 DCAF1Q9Y4B6 1507 aa10.78□□□□□ -0.68
RIF1-206ENST00000453091 HNRNPUQ00839 825 aaKnown RBP eCLIP10.78□□□□□ -0.68
RIF1-206ENST00000453091 EIF5BO60841 1220 aaKnown RBP10.74□□□□□ -0.69
RIF1-206ENST00000453091 SCRIBQ14160 1630 aa10.73□□□□□ -0.69
RIF1-206ENST00000453091 ARXQ96QS3 562 aa10.71□□□□□ -0.69
RIF1-206ENST00000453091 SLC24A1O60721 1099 aa10.7□□□□□ -0.7
RIF1-206ENST00000453091 ANP32AP39687 249 aaKnown RBP10.7□□□□□ -0.7
RIF1-206ENST00000453091 CANXP27824 592 aaKnown RBP10.68□□□□□ -0.7
RIF1-206ENST00000453091 CHGAP10645 457 aaKnown RBP10.66□□□□□ -0.7
RIF1-206ENST00000453091 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.65□□□□□ -0.717e-7■■■□□ 15.4
RIF1-206ENST00000453091 KDM2AQ9Y2K7 1162 aa10.62□□□□□ -0.71
RIF1-206ENST00000453091 TONSLQ96HA7 1378 aa10.61□□□□□ -0.71
RIF1-206ENST00000453091 PLEKHG5O94827 1062 aa10.59□□□□□ -0.71
RIF1-206ENST00000453091 RTN4Q9NQC3 1192 aaKnown RBP10.58□□□□□ -0.72
RIF1-206ENST00000453091 CCDC136Q96JN2 1154 aa10.58□□□□□ -0.72
RIF1-206ENST00000453091 MRS2Q9HD23 443 aa10.58□□□□□ -0.72
RIF1-206ENST00000453091 RRP7BPQ9NSQ0 103 aa10.58□□□□□ -0.72
RIF1-206ENST00000453091 ANP32EQ9BTT0 268 aa10.57□□□□□ -0.72
RIF1-206ENST00000453091 SUPT16HQ9Y5B9 1047 aaKnown RBP10.56□□□□□ -0.72
RIF1-206ENST00000453091 ZCCHC6Q5VYS8 1495 aaKnown RBP10.56□□□□□ -0.72
RIF1-206ENST00000453091 SIN3AQ96ST3 1273 aa10.55□□□□□ -0.72
RIF1-206ENST00000453091 ZBTB47Q9UFB7 747 aaPredicted RBP10.54□□□□□ -0.72
RIF1-206ENST00000453091 KCNH8Q96L42 1107 aa10.49□□□□□ -0.73
RIF1-206ENST00000453091 LAS1LQ9Y4W2 734 aaKnown RBP10.49□□□□□ -0.73
RIF1-206ENST00000453091 CEP162Q5TB80 1403 aa10.48□□□□□ -0.73
RIF1-206ENST00000453091 TMC1Q8TDI8 760 aa10.48□□□□□ -0.73
RIF1-206ENST00000453091 CLIP1P30622 1438 aa10.46□□□□□ -0.73
RIF1-206ENST00000453091 RGL3Q3MIN7 710 aa10.46□□□□□ -0.74
RIF1-206ENST00000453091 RSF1Q96T23 1441 aaPredicted RBP10.46□□□□□ -0.74
RIF1-206ENST00000453091 B4GALNT3Q6L9W6 998 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms