RNA–Protein interactions for RNA: ENST00000441915.5

SEMA3B-207, Transcript of semaphorin 3B, humanhuman

TSL 1 (best)

Gene SEMA3B, Length 2,710 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-207ENST00000441915 NISCHQ9Y2I1 1504 aa33.96■■■■□ 3.03
SEMA3B-207ENST00000441915 SHROOM4Q9ULL8 1493 aa28.94■■■□□ 2.22
SEMA3B-207ENST00000441915 CCDC180Q9P1Z9 1646 aa28.86■■■□□ 2.21
SEMA3B-207ENST00000441915 ZCCHC6Q5VYS8 1495 aaKnown RBP28.74■■■□□ 2.19
SEMA3B-207ENST00000441915 SUPT5HO00267 1087 aaKnown RBP28.46■■■□□ 2.15
SEMA3B-207ENST00000441915 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
SEMA3B-207ENST00000441915 DCAF1Q9Y4B6 1507 aa27.91■■■□□ 2.06
SEMA3B-207ENST00000441915 CHIC1Q5VXU3 224 aa27.74■■■□□ 2.03
SEMA3B-207ENST00000441915 MYO15BQ96JP2 1530 aa27.59■■■□□ 2.01
SEMA3B-207ENST00000441915 ABCC9O60706 1549 aa27.14■■□□□ 1.93
SEMA3B-207ENST00000441915 HRCP23327 699 aa27.07■■□□□ 1.92
SEMA3B-207ENST00000441915 SCRIBQ14160 1630 aa27■■□□□ 1.91
SEMA3B-207ENST00000441915 PCGF6Q9BYE7 350 aa26.97■■□□□ 1.91
SEMA3B-207ENST00000441915 RSF1Q96T23 1441 aaPredicted RBP26.89■■□□□ 1.9
SEMA3B-207ENST00000441915 LOC105371045A0A1W2PR82 267 aa26.88■■□□□ 1.89
SEMA3B-207ENST00000441915 NACADO15069 1562 aa26.67■■□□□ 1.86
SEMA3B-207ENST00000441915 RB1CC1Q8TDY2 1594 aa26.64■■□□□ 1.86
SEMA3B-207ENST00000441915 TRIM41Q8WV44 630 aa26.56■■□□□ 1.84
SEMA3B-207ENST00000441915 TRIM26Q12899 539 aaPredicted RBP26.5■■□□□ 1.83
SEMA3B-207ENST00000441915 CECR2Q9BXF3 1484 aa26.43■■□□□ 1.82
SEMA3B-207ENST00000441915 PPARGC1BQ86YN6 1023 aaKnown RBP26.4■■□□□ 1.82
SEMA3B-207ENST00000441915 MROH2BQ7Z745 1585 aa26.37■■□□□ 1.81
SEMA3B-207ENST00000441915 FAM9AQ8IZU1 332 aaPredicted RBP26.28■■□□□ 1.8
SEMA3B-207ENST00000441915 WIZO95785 1651 aa26.23■■□□□ 1.79
SEMA3B-207ENST00000441915 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
SEMA3B-207ENST00000441915 ZEB1P37275 1124 aaPredicted RBP26.02■■□□□ 1.76
SEMA3B-207ENST00000441915 EHMT2Q96KQ7 1210 aa26■■□□□ 1.75
SEMA3B-207ENST00000441915 EIF4G1Q04637 1599 aaKnown RBP25.92■■□□□ 1.74
SEMA3B-207ENST00000441915 TOP2AP11388 1531 aaKnown RBP25.86■■□□□ 1.73
SEMA3B-207ENST00000441915 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
SEMA3B-207ENST00000441915 UNC13AQ9UPW8 1703 aa25.76■■□□□ 1.71
SEMA3B-207ENST00000441915 CCDC88BA6NC98 1476 aa25.74■■□□□ 1.71
SEMA3B-207ENST00000441915 SMARCA2P51531 1590 aa25.7■■□□□ 1.71
SEMA3B-207ENST00000441915 PELP1Q8IZL8 1130 aaKnown RBP25.7■■□□□ 1.7
SEMA3B-207ENST00000441915 ABCC8Q09428 1581 aa25.67■■□□□ 1.7
SEMA3B-207ENST00000441915 SOGA1O94964 1423 aa25.46■■□□□ 1.67
SEMA3B-207ENST00000441915 WRNQ14191 1432 aaPredicted RBP eCLIP25.45■■□□□ 1.67
SEMA3B-207ENST00000441915 EEA1Q15075 1411 aa25.45■■□□□ 1.67
SEMA3B-207ENST00000441915 BICRAQ9NZM4 1560 aa25.43■■□□□ 1.66
SEMA3B-207ENST00000441915 CEP162Q5TB80 1403 aa25.42■■□□□ 1.66
SEMA3B-207ENST00000441915 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.663e-8■■■■□ 20.2
SEMA3B-207ENST00000441915 TNIKQ9UKE5 1360 aa25.41■■□□□ 1.66
SEMA3B-207ENST00000441915 CSRNP3Q8WYN3 585 aa25.38■■□□□ 1.65
SEMA3B-207ENST00000441915 PEG3Q9GZU2 1588 aa25.37■■□□□ 1.65
SEMA3B-207ENST00000441915 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.36■■□□□ 1.65
SEMA3B-207ENST00000441915 CCER1Q8TC90 406 aaPredicted RBP25.35■■□□□ 1.65
SEMA3B-207ENST00000441915 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
SEMA3B-207ENST00000441915 UBTFP17480 764 aaKnown RBP25.28■■□□□ 1.64
SEMA3B-207ENST00000441915 GOLGA3Q08378 1498 aa25.25■■□□□ 1.63
SEMA3B-207ENST00000441915 TTBK1Q5TCY1 1321 aaPredicted RBP25.2■■□□□ 1.63
SEMA3B-207ENST00000441915 ATAD2BQ9ULI0 1458 aa25.15■■□□□ 1.62
SEMA3B-207ENST00000441915 SYNJ1O43426 1573 aa25.12■■□□□ 1.61
SEMA3B-207ENST00000441915 BAZ1BQ9UIG0 1483 aaKnown RBP25.1■■□□□ 1.61
SEMA3B-207ENST00000441915 CEP164Q9UPV0 1460 aa25.1■■□□□ 1.61
SEMA3B-207ENST00000441915 KIF21BO75037 1637 aa25.05■■□□□ 1.6
SEMA3B-207ENST00000441915 SCAF1Q9H7N4 1312 aaKnown RBP24.94■■□□□ 1.58
SEMA3B-207ENST00000441915 CLIP1P30622 1438 aa24.94■■□□□ 1.58
SEMA3B-207ENST00000441915 DIEXFQ68CQ4 756 aaKnown RBP24.9■■□□□ 1.58
SEMA3B-207ENST00000441915 VPS8Q8N3P4 1428 aa24.86■■□□□ 1.57
SEMA3B-207ENST00000441915 RAPGEF2Q9Y4G8 1499 aa24.85■■□□□ 1.57
SEMA3B-207ENST00000441915 TOP2BQ02880 1626 aa24.84■■□□□ 1.57
SEMA3B-207ENST00000441915 MYT1Q01538 1121 aa24.82■■□□□ 1.56
SEMA3B-207ENST00000441915 APLP2Q06481 763 aa24.8■■□□□ 1.56
SEMA3B-207ENST00000441915 BIVM-ERCC5R4GMW8 1640 aa24.75■■□□□ 1.55
SEMA3B-207ENST00000441915 ACIN1Q9UKV3 1341 aaKnown RBP24.74■■□□□ 1.55
SEMA3B-207ENST00000441915 HNRNPUL2Q1KMD3 747 aaKnown RBP24.74■■□□□ 1.55
SEMA3B-207ENST00000441915 ZNF316A6NFI3 1004 aaPredicted RBP24.7■■□□□ 1.55
SEMA3B-207ENST00000441915 RANGAP1P46060 587 aaPredicted RBP24.68■■□□□ 1.54
SEMA3B-207ENST00000441915 HMGXB3Q12766 1538 aa24.68■■□□□ 1.54
SEMA3B-207ENST00000441915 NCAPD3P42695 1498 aa24.66■■□□□ 1.54
SEMA3B-207ENST00000441915 CENPBP07199 599 aaPredicted RBP24.66■■□□□ 1.54
SEMA3B-207ENST00000441915 NEUROD1Q13562 356 aa24.66■■□□□ 1.54
SEMA3B-207ENST00000441915 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
SEMA3B-207ENST00000441915 PRXQ9BXM0 1461 aa24.63■■□□□ 1.53
SEMA3B-207ENST00000441915 CUX1P39880 1505 aa24.54■■□□□ 1.52
SEMA3B-207ENST00000441915 KIF27Q86VH2 1401 aa24.52■■□□□ 1.52
SEMA3B-207ENST00000441915 CFTRP13569 1480 aa24.49■■□□□ 1.51
SEMA3B-207ENST00000441915 ARAP1Q96P48 1450 aa24.49■■□□□ 1.51
SEMA3B-207ENST00000441915 GTF3C3Q9Y5Q9 886 aa24.44■■□□□ 1.5
SEMA3B-207ENST00000441915 CLSPNQ9HAW4 1339 aa24.38■■□□□ 1.49
SEMA3B-207ENST00000441915 KANK4Q5T7N3 995 aaPredicted RBP24.37■■□□□ 1.49
SEMA3B-207ENST00000441915 MIER1Q8N108 512 aa24.31■■□□□ 1.48
SEMA3B-207ENST00000441915 PRDM2Q13029 1718 aa24.3■■□□□ 1.48
SEMA3B-207ENST00000441915 DHX57Q6P158 1386 aaKnown RBP24.3■■□□□ 1.48
SEMA3B-207ENST00000441915 RRBP1Q9P2E9 1410 aaKnown RBP24.29■■□□□ 1.48
SEMA3B-207ENST00000441915 ARHGAP35Q9NRY4 1499 aa24.29■■□□□ 1.48
SEMA3B-207ENST00000441915 YTHDC1Q96MU7 727 aaKnown RBP24.26■■□□□ 1.47
SEMA3B-207ENST00000441915 CUX2O14529 1486 aa24.23■■□□□ 1.47
SEMA3B-207ENST00000441915 IGF1RP08069 1367 aa24.21■■□□□ 1.47
SEMA3B-207ENST00000441915 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
SEMA3B-207ENST00000441915 CCNB3Q8WWL7 1395 aa24.2■■□□□ 1.46
SEMA3B-207ENST00000441915 CARMIL1Q5VZK9 1371 aa24.12■■□□□ 1.45
SEMA3B-207ENST00000441915 FGD5Q6ZNL6 1462 aa24.11■■□□□ 1.45
SEMA3B-207ENST00000441915 MAP3K1Q13233 1512 aa24.08■■□□□ 1.45
SEMA3B-207ENST00000441915 TIAM1Q13009 1591 aa24.06■■□□□ 1.44
SEMA3B-207ENST00000441915 ITGAEP38570 1179 aa24.05■■□□□ 1.44
SEMA3B-207ENST00000441915 FHAD1B1AJZ9 1412 aa23.98■■□□□ 1.43
SEMA3B-207ENST00000441915 LRRC9Q6ZRR7 1453 aa23.97■■□□□ 1.43
SEMA3B-207ENST00000441915 RAB3GAP2Q9H2M9 1393 aa23.96■■□□□ 1.43
SEMA3B-207ENST00000441915 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms