RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 DCAF8L2P0C7V8 631 aa22.16■■□□□ 1.14
NEK1-201ENST00000439128 NISCHQ9Y2I1 1504 aa20.53■□□□□ 0.88
NEK1-201ENST00000439128 SUPT5HO00267 1087 aaKnown RBP20.25■□□□□ 0.83
NEK1-201ENST00000439128 SHROOM4Q9ULL8 1493 aa20.09■□□□□ 0.81
NEK1-201ENST00000439128 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
NEK1-201ENST00000439128 FAM9AQ8IZU1 332 aaPredicted RBP19.6■□□□□ 0.73
NEK1-201ENST00000439128 APLP2Q06481 763 aa19.38■□□□□ 0.69
NEK1-201ENST00000439128 RANGAP1P46060 587 aaPredicted RBP19.18■□□□□ 0.66
NEK1-201ENST00000439128 ATP1B4Q9UN42 357 aaPredicted RBP19.1■□□□□ 0.65
NEK1-201ENST00000439128 TTBK1Q5TCY1 1321 aaPredicted RBP19.02■□□□□ 0.64
NEK1-201ENST00000439128 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
NEK1-201ENST00000439128 UBTFP17480 764 aaKnown RBP18.69■□□□□ 0.58
NEK1-201ENST00000439128 MYT1LQ9UL68 1186 aa18.69■□□□□ 0.58
NEK1-201ENST00000439128 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.58■□□□□ 0.56
NEK1-201ENST00000439128 HNRNPUL2Q1KMD3 747 aaKnown RBP18.58■□□□□ 0.56
NEK1-201ENST00000439128 ABCC9O60706 1549 aa18.56■□□□□ 0.56
NEK1-201ENST00000439128 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
NEK1-201ENST00000439128 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
NEK1-201ENST00000439128 CHIC1Q5VXU3 224 aa18.33■□□□□ 0.52
NEK1-201ENST00000439128 PELP1Q8IZL8 1130 aaKnown RBP18.24■□□□□ 0.51
NEK1-201ENST00000439128 FBLN2P98095 1184 aa18.14■□□□□ 0.49
NEK1-201ENST00000439128 CCER1Q8TC90 406 aaPredicted RBP18.13■□□□□ 0.49
NEK1-201ENST00000439128 ITGAEP38570 1179 aa18.1■□□□□ 0.49
NEK1-201ENST00000439128 PPARGC1BQ86YN6 1023 aaKnown RBP18.09■□□□□ 0.49
NEK1-201ENST00000439128 POLR3GLQ9BT43 218 aa17.96■□□□□ 0.46
NEK1-201ENST00000439128 SLC4A1APQ9BWU0 796 aaKnown RBP17.89■□□□□ 0.45
NEK1-201ENST00000439128 CNGB1Q14028 1251 aaPredicted RBP17.73■□□□□ 0.43
NEK1-201ENST00000439128 ZEB1P37275 1124 aaPredicted RBP17.72■□□□□ 0.43
NEK1-201ENST00000439128 FAM50AQ14320 339 aaKnown RBP17.66■□□□□ 0.42
NEK1-201ENST00000439128 BCANQ96GW7 911 aa17.66■□□□□ 0.42
NEK1-201ENST00000439128 ARID3CA6NKF2 412 aa17.64■□□□□ 0.41
NEK1-201ENST00000439128 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
NEK1-201ENST00000439128 TRIM52Q96A61 297 aa17.61■□□□□ 0.41
NEK1-201ENST00000439128 LOC105371045A0A1W2PR82 267 aa17.56■□□□□ 0.4
NEK1-201ENST00000439128 ERICH6Q7L0X2 663 aa17.55■□□□□ 0.4
NEK1-201ENST00000439128 ESF1Q9H501 851 aaKnown RBP17.55■□□□□ 0.4
NEK1-201ENST00000439128 NEFLP07196 543 aa17.55■□□□□ 0.4
NEK1-201ENST00000439128 CENPBP07199 599 aaPredicted RBP17.54■□□□□ 0.4
NEK1-201ENST00000439128 NPM1P06748 294 aaKnown RBP eCLIP17.54■□□□□ 0.4
NEK1-201ENST00000439128 YTHDC1Q96MU7 727 aaKnown RBP17.54■□□□□ 0.4
NEK1-201ENST00000439128 P3H3Q8IVL6 736 aa17.5■□□□□ 0.39
NEK1-201ENST00000439128 SCRIBQ14160 1630 aa17.43■□□□□ 0.38
NEK1-201ENST00000439128 ZNF777Q9ULD5 760 aaPredicted RBP17.42■□□□□ 0.38
NEK1-201ENST00000439128 ZNF326Q5BKZ1 582 aaKnown RBP17.39■□□□□ 0.38
NEK1-201ENST00000439128 TRIM26Q12899 539 aaPredicted RBP17.38■□□□□ 0.37
NEK1-201ENST00000439128 SLC24A1O60721 1099 aa17.33■□□□□ 0.36
NEK1-201ENST00000439128 STAG3Q9UJ98 1225 aa17.31■□□□□ 0.36
NEK1-201ENST00000439128 NEUROD1Q13562 356 aa17.29■□□□□ 0.36
NEK1-201ENST00000439128 CDK11AQ9UQ88 783 aaPredicted RBP17.28■□□□□ 0.36
NEK1-201ENST00000439128 CHMP7Q8WUX9 453 aaPredicted RBP17.23■□□□□ 0.35
NEK1-201ENST00000439128 CHGAP10645 457 aaKnown RBP17.22■□□□□ 0.35
NEK1-201ENST00000439128 DAXXQ9UER7 740 aaPredicted RBP17.13■□□□□ 0.33
NEK1-201ENST00000439128 CSRNP3Q8WYN3 585 aa17.09■□□□□ 0.33
NEK1-201ENST00000439128 RB1CC1Q8TDY2 1594 aa17.08■□□□□ 0.32
NEK1-201ENST00000439128 NEFMP07197 916 aa17.05■□□□□ 0.32
NEK1-201ENST00000439128 ERCC6Q03468 1493 aa17.04■□□□□ 0.32
NEK1-201ENST00000439128 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
NEK1-201ENST00000439128 TRHP20396 242 aaPredicted RBP17.02■□□□□ 0.32
NEK1-201ENST00000439128 CLSPNQ9HAW4 1339 aa17.02■□□□□ 0.32
NEK1-201ENST00000439128 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.01■□□□□ 0.31
NEK1-201ENST00000439128 ARID4BQ4LE39 1312 aaPredicted RBP16.99■□□□□ 0.31
NEK1-201ENST00000439128 KCNH8Q96L42 1107 aa16.99■□□□□ 0.31
NEK1-201ENST00000439128 BCL11AQ9H165 835 aa16.96■□□□□ 0.31
NEK1-201ENST00000439128 ZBTB47Q9UFB7 747 aaPredicted RBP16.94■□□□□ 0.3
NEK1-201ENST00000439128 A0A0G2JS52 829 aa16.9■□□□□ 0.3
NEK1-201ENST00000439128 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
NEK1-201ENST00000439128 CCDC180Q9P1Z9 1646 aa16.88■□□□□ 0.29
NEK1-201ENST00000439128 PLEKHG5O94827 1062 aa16.87■□□□□ 0.29
NEK1-201ENST00000439128 HRCP23327 699 aa16.87■□□□□ 0.29
NEK1-201ENST00000439128 C14orf37Q86TY3 774 aa16.87■□□□□ 0.29
NEK1-201ENST00000439128 TSPY4P0CV99 314 aa16.85■□□□□ 0.29
NEK1-201ENST00000439128 TSPY10P0CW01 314 aa16.85■□□□□ 0.29
NEK1-201ENST00000439128 CHIC2Q9UKJ5 165 aa16.85■□□□□ 0.29
NEK1-201ENST00000439128 ZCCHC6Q5VYS8 1495 aaKnown RBP16.84■□□□□ 0.29
NEK1-201ENST00000439128 CANXP27824 592 aaKnown RBP16.83■□□□□ 0.28
NEK1-201ENST00000439128 PPP1R15AO75807 674 aaPredicted RBP16.82■□□□□ 0.28
NEK1-201ENST00000439128 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
NEK1-201ENST00000439128 ANP32CO43423 234 aa16.77■□□□□ 0.27
NEK1-201ENST00000439128 PLEKHD1A6NEE1 506 aa16.75■□□□□ 0.27
NEK1-201ENST00000439128 BAZ1BQ9UIG0 1483 aaKnown RBP16.74■□□□□ 0.27
NEK1-201ENST00000439128 HAP1P54257 671 aaPredicted RBP16.74■□□□□ 0.27
NEK1-201ENST00000439128 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.27
NEK1-201ENST00000439128 NACADO15069 1562 aa16.7■□□□□ 0.26
NEK1-201ENST00000439128 MTUS2Q5JR59 1369 aa16.7■□□□□ 0.26
NEK1-201ENST00000439128 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
NEK1-201ENST00000439128 DIEXFQ68CQ4 756 aaKnown RBP16.64■□□□□ 0.25
NEK1-201ENST00000439128 NPM2Q86SE8 214 aaKnown RBP16.6■□□□□ 0.25
NEK1-201ENST00000439128 TONSLQ96HA7 1378 aa16.6■□□□□ 0.25
NEK1-201ENST00000439128 MLECQ14165 292 aa16.58■□□□□ 0.25
NEK1-201ENST00000439128 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
NEK1-201ENST00000439128 RRP7BPQ9NSQ0 103 aa16.52■□□□□ 0.23
NEK1-201ENST00000439128 MYT1Q01538 1121 aa16.51■□□□□ 0.23
NEK1-201ENST00000439128 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
NEK1-201ENST00000439128 RGL3Q3MIN7 710 aa16.45■□□□□ 0.22
NEK1-201ENST00000439128 RSF1Q96T23 1441 aaPredicted RBP16.44■□□□□ 0.22
NEK1-201ENST00000439128 TMC1Q8TDI8 760 aa16.44■□□□□ 0.22
NEK1-201ENST00000439128 ARXQ96QS3 562 aa16.42■□□□□ 0.22
NEK1-201ENST00000439128 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
NEK1-201ENST00000439128 EIF4G1Q04637 1599 aaKnown RBP16.42■□□□□ 0.22
NEK1-201ENST00000439128 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms