RNA–Protein interactions for RNA: ENST00000438704.6

HMGB2-202, Transcript of high mobility group box 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB2, Length 1,032 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB2-202ENST00000438704 AEBP2Q6ZN18 517 aaPredicted RBP27.15■■□□□ 1.94
HMGB2-202ENST00000438704 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
HMGB2-202ENST00000438704 SENP3Q9H4L4 574 aaPredicted RBP23.26■■□□□ 1.31
HMGB2-202ENST00000438704 PHF23Q9BUL5 403 aaPredicted RBP22.89■■□□□ 1.25
HMGB2-202ENST00000438704 FOXD1Q16676 465 aa21.6■■□□□ 1.05
HMGB2-202ENST00000438704 PLPPR3Q6T4P5 718 aa20.71■□□□□ 0.91
HMGB2-202ENST00000438704 MSH5O43196 834 aa20.3■□□□□ 0.84
HMGB2-202ENST00000438704 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
HMGB2-202ENST00000438704 PPP6R1Q9UPN7 881 aa20.16■□□□□ 0.82
HMGB2-202ENST00000438704 ADRA2BP18089 450 aa20.1■□□□□ 0.81
HMGB2-202ENST00000438704 POTEDQ86YR6 584 aa19.7■□□□□ 0.74
HMGB2-202ENST00000438704 SCAF1Q9H7N4 1312 aaKnown RBP18.51■□□□□ 0.55
HMGB2-202ENST00000438704 MAPK8IP2Q13387 824 aaPredicted RBP18.43■□□□□ 0.54
HMGB2-202ENST00000438704 DMRT2Q9Y5R5 561 aa18.43■□□□□ 0.54
HMGB2-202ENST00000438704 PPP4R3CPQ6ZMV5 832 aa18.1■□□□□ 0.49
HMGB2-202ENST00000438704 CNKSR2Q8WXI2 1034 aa17.81■□□□□ 0.44
HMGB2-202ENST00000438704 HOXD11P31277 338 aaPredicted RBP17.78■□□□□ 0.44
HMGB2-202ENST00000438704 RNF216Q9NWF9 866 aaPredicted RBP17.65■□□□□ 0.42
HMGB2-202ENST00000438704 DCAF8L1A6NGE4 600 aa17.58■□□□□ 0.4
HMGB2-202ENST00000438704 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
HMGB2-202ENST00000438704 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.37
HMGB2-202ENST00000438704 CACNB1Q02641 598 aaPredicted RBP17.33■□□□□ 0.36
HMGB2-202ENST00000438704 RNF39Q9H2S5 420 aa17.29■□□□□ 0.36
HMGB2-202ENST00000438704 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
HMGB2-202ENST00000438704 NPM3O75607 178 aaKnown RBP17.16■□□□□ 0.34
HMGB2-202ENST00000438704 C1QBPQ07021 282 aaKnown RBP17.07■□□□□ 0.32
HMGB2-202ENST00000438704 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.88■□□□□ 0.295e-13■■■■■ 44.5
HMGB2-202ENST00000438704 KCNA4P22459 653 aa16.81■□□□□ 0.28
HMGB2-202ENST00000438704 U3KPZ7 1027 aaPredicted RBP16.54■□□□□ 0.24
HMGB2-202ENST00000438704 SLC4A2P04920 1241 aa16.37■□□□□ 0.21
HMGB2-202ENST00000438704 CAPN15O75808 1086 aa16.25■□□□□ 0.19
HMGB2-202ENST00000438704 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
HMGB2-202ENST00000438704 APLP2Q06481 763 aa16.19■□□□□ 0.18
HMGB2-202ENST00000438704 DSG3P32926 999 aa16.18■□□□□ 0.18
HMGB2-202ENST00000438704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.17■□□□□ 0.18
HMGB2-202ENST00000438704 HNRNPUL2Q1KMD3 747 aaKnown RBP16.17■□□□□ 0.18
HMGB2-202ENST00000438704 SAMD1Q6SPF0 538 aaPredicted RBP16.05■□□□□ 0.16
HMGB2-202ENST00000438704 ZNF219Q9P2Y4 722 aaPredicted RBP16.05■□□□□ 0.16
HMGB2-202ENST00000438704 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
HMGB2-202ENST00000438704 MYCNP04198 464 aaPredicted RBP15.93■□□□□ 0.14
HMGB2-202ENST00000438704 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
HMGB2-202ENST00000438704 ABCB7O75027 752 aa15.83■□□□□ 0.12
HMGB2-202ENST00000438704 FOXD4L1Q9NU39 408 aa15.76■□□□□ 0.11
HMGB2-202ENST00000438704 POLA2Q14181 598 aa15.56■□□□□ 0.08
HMGB2-202ENST00000438704 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
HMGB2-202ENST00000438704 POTEHQ6S545 545 aa15.46■□□□□ 0.07
HMGB2-202ENST00000438704 ZBTB22O15209 634 aa15.44■□□□□ 0.06
HMGB2-202ENST00000438704 ATF5Q9Y2D1 282 aaPredicted RBP15.44■□□□□ 0.06
HMGB2-202ENST00000438704 ZBTB12Q9Y330 459 aaPredicted RBP15.36■□□□□ 0.05
HMGB2-202ENST00000438704 ATXN8OSP0DMR3 200 aa15.32■□□□□ 0.04
HMGB2-202ENST00000438704 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.02
HMGB2-202ENST00000438704 AKT1S1Q96B36 256 aa15.13■□□□□ 0.01
HMGB2-202ENST00000438704 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
HMGB2-202ENST00000438704 OSCARQ8IYS5 282 aa15.07■□□□□ 0
HMGB2-202ENST00000438704 FBLN2P98095 1184 aa14.94□□□□□ -0.02
HMGB2-202ENST00000438704 REM2Q8IYK8 340 aaPredicted RBP14.93□□□□□ -0.02
HMGB2-202ENST00000438704 SPDYE2BA6NHP3 402 aa14.86□□□□□ -0.03
HMGB2-202ENST00000438704 SPDYE6P0CI01 402 aa14.86□□□□□ -0.03
HMGB2-202ENST00000438704 SPDYE2Q495Y8 402 aa14.86□□□□□ -0.03
HMGB2-202ENST00000438704 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
HMGB2-202ENST00000438704 MKRN4PQ13434 485 aaPredicted RBP14.77□□□□□ -0.05
HMGB2-202ENST00000438704 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
HMGB2-202ENST00000438704 PIP4P2Q8N4L2 257 aa14.72□□□□□ -0.05
HMGB2-202ENST00000438704 FXR2P51116 673 aaKnown RBP eCLIP14.67□□□□□ -0.061e-6■□□□□ 9.7
HMGB2-202ENST00000438704 SSUH2Q9Y2M2 353 aa14.65□□□□□ -0.06
HMGB2-202ENST00000438704 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
HMGB2-202ENST00000438704 ZNF692Q9BU19 519 aaPredicted RBP14.62□□□□□ -0.07
HMGB2-202ENST00000438704 SPDYE1Q8NFV5 336 aaPredicted RBP14.58□□□□□ -0.08
HMGB2-202ENST00000438704 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
HMGB2-202ENST00000438704 SP7Q8TDD2 431 aaPredicted RBP14.52□□□□□ -0.09
HMGB2-202ENST00000438704 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
HMGB2-202ENST00000438704 CLEC11AQ9Y240 323 aa14.48□□□□□ -0.09
HMGB2-202ENST00000438704 HAX1O00165 279 aa14.43□□□□□ -0.1
HMGB2-202ENST00000438704 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
HMGB2-202ENST00000438704 PRKAR2AP13861 404 aaKnown RBP14.39□□□□□ -0.11
HMGB2-202ENST00000438704 MYO15BQ96JP2 1530 aa14.37□□□□□ -0.11
HMGB2-202ENST00000438704 PRR29P0C7W0 189 aa14.28□□□□□ -0.12
HMGB2-202ENST00000438704 C19orf67A6NJJ6 358 aa14.2□□□□□ -0.14
HMGB2-202ENST00000438704 EVX2Q03828 476 aa14.2□□□□□ -0.14
HMGB2-202ENST00000438704 ABCC9O60706 1549 aa14.2□□□□□ -0.14
HMGB2-202ENST00000438704 CHADLQ6NUI6 762 aa14.18□□□□□ -0.14
HMGB2-202ENST00000438704 NACADO15069 1562 aa14.17□□□□□ -0.14
HMGB2-202ENST00000438704 SPDYE4A6NLX3 237 aa14.1□□□□□ -0.15
HMGB2-202ENST00000438704 DCAF8L2P0C7V8 631 aa14.09□□□□□ -0.15
HMGB2-202ENST00000438704 STAG3Q9UJ98 1225 aa14.09□□□□□ -0.15
HMGB2-202ENST00000438704 FARP1Q9Y4F1 1045 aaPredicted RBP14.03□□□□□ -0.16
HMGB2-202ENST00000438704 RB1CC1Q8TDY2 1594 aa13.99□□□□□ -0.17
HMGB2-202ENST00000438704 GABBR2O75899 941 aa13.95□□□□□ -0.18
HMGB2-202ENST00000438704 SHROOM4Q9ULL8 1493 aa13.94□□□□□ -0.18
HMGB2-202ENST00000438704 CD44P16070 742 aaKnown RBP13.94□□□□□ -0.18
HMGB2-202ENST00000438704 CREBZFQ9NS37 354 aa13.92□□□□□ -0.18
HMGB2-202ENST00000438704 CLCN6P51797 869 aa13.88□□□□□ -0.19
HMGB2-202ENST00000438704 PROM2Q8N271 834 aa13.83□□□□□ -0.2
HMGB2-202ENST00000438704 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
HMGB2-202ENST00000438704 ZNF579Q8NAF0 562 aaKnown RBP13.77□□□□□ -0.21
HMGB2-202ENST00000438704 ZRANB1Q9UGI0 708 aa13.73□□□□□ -0.21
HMGB2-202ENST00000438704 NPM1P06748 294 aaKnown RBP eCLIP13.72□□□□□ -0.217e-7■■□□□ 14.1
HMGB2-202ENST00000438704 MNX1P50219 401 aaPredicted RBP13.69□□□□□ -0.22
HMGB2-202ENST00000438704 PAK3O75914 559 aaPredicted RBP13.68□□□□□ -0.22
HMGB2-202ENST00000438704 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms