RNA–Protein interactions for RNA: ENST00000438704.6

HMGB2-202, Transcript of high mobility group box 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB2, Length 1,032 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB2-202ENST00000438704 TARDBPQ13148 414 aaKnown RBP eCLIP6.99□□□□□ -1.296e-20■■■■■ 73.3
HMGB2-202ENST00000438704 TRA2AQ13595 282 aaKnown RBP eCLIP7.13□□□□□ -1.272e-18■■■■■ 54.7
HMGB2-202ENST00000438704 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.88■□□□□ 0.295e-13■■■■■ 44.5
HMGB2-202ENST00000438704 SRSF1Q07955 248 aaKnown RBP eCLIP6.23□□□□□ -1.411e-13■■■■■ 37.7
HMGB2-202ENST00000438704 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.92□□□□□ -1.143e-19■■■■■ 33
HMGB2-202ENST00000438704 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.41□□□□□ -1.061e-25■■■■■ 32.6
HMGB2-202ENST00000438704 SRSF7Q16629 238 aaKnown RBP eCLIP6.5□□□□□ -1.374e-23■■■■■ 30.6
HMGB2-202ENST00000438704 AGGF1Q8N302 714 aaeCLIP7.8□□□□□ -1.164e-33■■■■■ 29.8
HMGB2-202ENST00000438704 SF3B4Q15427 424 aaKnown RBP eCLIP6.69□□□□□ -1.345e-8■■■■■ 28.2
HMGB2-202ENST00000438704 ZNF622Q969S3 477 aaKnown RBP eCLIP8.98□□□□□ -0.973e-29■■■■□ 24.7
HMGB2-202ENST00000438704 TIA1P31483 386 aaKnown RBP eCLIP7.31□□□□□ -1.248e-8■■■■□ 23.5
HMGB2-202ENST00000438704 SUB1P53999 127 aaKnown RBP eCLIP6.08□□□□□ -1.449e-31■■■■□ 23.1
HMGB2-202ENST00000438704 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.13□□□□□ -1.432e-7■■■■□ 21.2
HMGB2-202ENST00000438704 RBM15Q96T37 977 aaKnown RBP eCLIP7.84□□□□□ -1.158e-16■■■■□ 20.3
HMGB2-202ENST00000438704 AQRO60306 1485 aaKnown RBP eCLIP12.03□□□□□ -0.481e-28■■■■□ 19.9
HMGB2-202ENST00000438704 SRSF9Q13242 221 aaKnown RBP eCLIP5.13□□□□□ -1.592e-13■■■■□ 19.6
HMGB2-202ENST00000438704 CPSF6Q16630 551 aaKnown RBP eCLIP7.62□□□□□ -1.197e-49■■■□□ 18.9
HMGB2-202ENST00000438704 PUM1Q14671 1186 aaKnown RBP eCLIP7.11□□□□□ -1.271e-41■■■□□ 17.2
HMGB2-202ENST00000438704 DDX6P26196 483 aaKnown RBP eCLIP7.79□□□□□ -1.167e-26■■■□□ 17.1
HMGB2-202ENST00000438704 FUBP3Q96I24 572 aaKnown RBP eCLIP7.99□□□□□ -1.131e-10■■■□□ 16.2
HMGB2-202ENST00000438704 WDR43Q15061 677 aaKnown RBP eCLIP10.16□□□□□ -0.781e-11■■■□□ 16.2
HMGB2-202ENST00000438704 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.52□□□□□ -0.416e-9■■■□□ 16.1
HMGB2-202ENST00000438704 EFTUD2Q15029 972 aaKnown RBP eCLIP7.7□□□□□ -1.182e-11■■■□□ 15.6
HMGB2-202ENST00000438704 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.66□□□□□ -1.183e-15■■■□□ 15.4
HMGB2-202ENST00000438704 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.87□□□□□ -1.152e-35■■■□□ 15.2
HMGB2-202ENST00000438704 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.07□□□□□ -1.121e-11■■■□□ 14.6
HMGB2-202ENST00000438704 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.04□□□□□ -1.129e-8■■□□□ 14.5
HMGB2-202ENST00000438704 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.33□□□□□ -1.241e-323■■□□□ 14.2
HMGB2-202ENST00000438704 PABPC4Q13310 644 aaKnown RBP eCLIP8.53□□□□□ -1.043e-50■■□□□ 14.2
HMGB2-202ENST00000438704 NPM1P06748 294 aaKnown RBP eCLIP13.72□□□□□ -0.217e-7■■□□□ 14.1
HMGB2-202ENST00000438704 RBFOX2O43251 390 aaKnown RBP eCLIP6.29□□□□□ -1.41e-23■■□□□ 14.1
HMGB2-202ENST00000438704 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.35□□□□□ -1.078e-18■■□□□ 13.8
HMGB2-202ENST00000438704 RBM22Q9NW64 420 aaKnown RBP eCLIP7.75□□□□□ -1.175e-6■■□□□ 13.6
HMGB2-202ENST00000438704 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.65□□□□□ -1.023e-18■■□□□ 13.6
HMGB2-202ENST00000438704 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.09□□□□□ -1.116e-9■■□□□ 13.6
HMGB2-202ENST00000438704 U2AF2P26368 475 aaKnown RBP eCLIP8.84□□□□□ -0.994e-7■■□□□ 13.5
HMGB2-202ENST00000438704 AARSP49588 968 aaKnown RBP eCLIP8.1□□□□□ -1.111e-323■■□□□ 12.8
HMGB2-202ENST00000438704 FXR1P51114 621 aaKnown RBP eCLIP8.34□□□□□ -1.075e-8■■□□□ 12.8
HMGB2-202ENST00000438704 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.89□□□□□ -1.152e-7■■□□□ 12.4
HMGB2-202ENST00000438704 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.24□□□□□ -0.931e-23■■□□□ 12.3
HMGB2-202ENST00000438704 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.96□□□□□ -1.143e-9■■□□□ 12.1
HMGB2-202ENST00000438704 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.08□□□□□ -1.287e-22■■□□□ 12
HMGB2-202ENST00000438704 FTOQ9C0B1 505 aaKnown RBP eCLIP8.74□□□□□ -1.011e-18■■□□□ 11.8
HMGB2-202ENST00000438704 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.29□□□□□ -1.249e-15■■□□□ 11.6
HMGB2-202ENST00000438704 SF3B1O75533 1304 aaKnown RBP eCLIP7.96□□□□□ -1.141e-5■■□□□ 11.5
HMGB2-202ENST00000438704 EIF3GO75821 320 aaKnown RBP eCLIP5.9□□□□□ -1.461e-9■■□□□ 11.4
HMGB2-202ENST00000438704 YBX3P16989 372 aaKnown RBP eCLIP8.69□□□□□ -1.022e-29■□□□□ 10.8
HMGB2-202ENST00000438704 DDX3XO00571 662 aaKnown RBP eCLIP8.2□□□□□ -1.15e-15■□□□□ 10.7
HMGB2-202ENST00000438704 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.3□□□□□ -0.924e-39■□□□□ 10.3
HMGB2-202ENST00000438704 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.36□□□□□ -1.073e-6■□□□□ 10.1
HMGB2-202ENST00000438704 NOLC1Q14978 699 aaKnown RBP eCLIP8.36□□□□□ -1.078e-34■□□□□ 10.1
HMGB2-202ENST00000438704 EIF3DO15371 548 aaKnown RBP eCLIP8.45□□□□□ -1.062e-24■□□□□ 10
HMGB2-202ENST00000438704 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.33□□□□□ -0.64e-39■□□□□ 9.9
HMGB2-202ENST00000438704 KHSRPQ92945 711 aaKnown RBP eCLIP11.74□□□□□ -0.535e-9■□□□□ 9.7
HMGB2-202ENST00000438704 FXR2P51116 673 aaKnown RBP eCLIP14.67□□□□□ -0.061e-6■□□□□ 9.7
HMGB2-202ENST00000438704 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.12□□□□□ -1.116e-11■□□□□ 9.6
HMGB2-202ENST00000438704 LARP4Q71RC2 724 aaKnown RBP eCLIP7.45□□□□□ -1.225e-38■□□□□ 9.5
HMGB2-202ENST00000438704 PPIGQ13427 754 aaKnown RBP eCLIP7.91□□□□□ -1.146e-6■□□□□ 9.4
HMGB2-202ENST00000438704 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.15□□□□□ -0.945e-67■□□□□ 9.1
HMGB2-202ENST00000438704 EIF4G2P78344 907 aaKnown RBP eCLIP10.78□□□□□ -0.682e-52■□□□□ 9.1
HMGB2-202ENST00000438704 CDC40O60508 579 aaKnown RBP eCLIP6.96□□□□□ -1.32e-12■□□□□ 9
HMGB2-202ENST00000438704 EIF3HO15372 352 aaKnown RBP eCLIP7.88□□□□□ -1.155e-6■□□□□ 8.9
HMGB2-202ENST00000438704 METAP2P50579 478 aaKnown RBP eCLIP8.9□□□□□ -0.981e-323■□□□□ 8.4
HMGB2-202ENST00000438704 HLTFQ14527 1009 aaKnown RBP eCLIP7.89□□□□□ -1.155e-31■□□□□ 8.2
HMGB2-202ENST00000438704 NIPBLQ6KC79 2804 aaeCLIP5.56□□□□□ -1.521e-56■□□□□ 8.2
Retrieved 65 of 65 RNA–protein pairs in 16.7 ms