RNA–Protein interactions for RNA: ENST00000438594.2

HMGB1P12-201, Transcript of high mobility group box 1 pseudogene 12, humanhuman

BASIC

Gene HMGB1P12, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P12-201ENST00000438594 AEBP2Q6ZN18 517 aaPredicted RBP19.81■□□□□ 0.76
HMGB1P12-201ENST00000438594 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
HMGB1P12-201ENST00000438594 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.31
HMGB1P12-201ENST00000438594 PHF23Q9BUL5 403 aaPredicted RBP16.73■□□□□ 0.27
HMGB1P12-201ENST00000438594 FOXD1Q16676 465 aa15.81■□□□□ 0.12
HMGB1P12-201ENST00000438594 PLPPR3Q6T4P5 718 aa14.9□□□□□ -0.02
HMGB1P12-201ENST00000438594 MSH5O43196 834 aa14.86□□□□□ -0.03
HMGB1P12-201ENST00000438594 PIAS4Q8N2W9 510 aaPredicted RBP14.81□□□□□ -0.04
HMGB1P12-201ENST00000438594 POTEDQ86YR6 584 aa14.74□□□□□ -0.05
HMGB1P12-201ENST00000438594 ADRA2BP18089 450 aa14.67□□□□□ -0.06
HMGB1P12-201ENST00000438594 PPP6R1Q9UPN7 881 aa14.67□□□□□ -0.06
HMGB1P12-201ENST00000438594 MAPK8IP2Q13387 824 aaPredicted RBP13.52□□□□□ -0.25
HMGB1P12-201ENST00000438594 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
HMGB1P12-201ENST00000438594 DMRT2Q9Y5R5 561 aa13.4□□□□□ -0.26
HMGB1P12-201ENST00000438594 PPP4R3CPQ6ZMV5 832 aa13.06□□□□□ -0.32
HMGB1P12-201ENST00000438594 DCAF8L1A6NGE4 600 aa13.04□□□□□ -0.32
HMGB1P12-201ENST00000438594 CACNB1Q02641 598 aaPredicted RBP12.91□□□□□ -0.34
HMGB1P12-201ENST00000438594 HOXD11P31277 338 aaPredicted RBP12.82□□□□□ -0.36
HMGB1P12-201ENST00000438594 CNKSR2Q8WXI2 1034 aa12.82□□□□□ -0.36
HMGB1P12-201ENST00000438594 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
HMGB1P12-201ENST00000438594 RNF39Q9H2S5 420 aa12.63□□□□□ -0.39
HMGB1P12-201ENST00000438594 NCBP3Q53F19 620 aaKnown RBP12.54□□□□□ -0.4
HMGB1P12-201ENST00000438594 C1QBPQ07021 282 aaKnown RBP12.46□□□□□ -0.41
HMGB1P12-201ENST00000438594 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.35□□□□□ -0.43
HMGB1P12-201ENST00000438594 DNAJC5BQ9UF47 199 aa12.33□□□□□ -0.44
HMGB1P12-201ENST00000438594 NPM3O75607 178 aaKnown RBP12.32□□□□□ -0.44
HMGB1P12-201ENST00000438594 U3KPZ7 1027 aaPredicted RBP12□□□□□ -0.49
HMGB1P12-201ENST00000438594 KCNA4P22459 653 aa11.98□□□□□ -0.49
HMGB1P12-201ENST00000438594 CAPN15O75808 1086 aa11.95□□□□□ -0.5
HMGB1P12-201ENST00000438594 SPINK5Q9NQ38 1064 aaPredicted RBP11.9□□□□□ -0.5
HMGB1P12-201ENST00000438594 DSG3P32926 999 aa11.81□□□□□ -0.52
HMGB1P12-201ENST00000438594 SLC4A2P04920 1241 aa11.77□□□□□ -0.53
HMGB1P12-201ENST00000438594 TRHP20396 242 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P12-201ENST00000438594 APLP2Q06481 763 aa11.69□□□□□ -0.54
HMGB1P12-201ENST00000438594 ABCB7O75027 752 aa11.66□□□□□ -0.54
HMGB1P12-201ENST00000438594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P12-201ENST00000438594 HNRNPUL2Q1KMD3 747 aaKnown RBP11.63□□□□□ -0.55
HMGB1P12-201ENST00000438594 ZNF219Q9P2Y4 722 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P12-201ENST00000438594 SAMD1Q6SPF0 538 aaPredicted RBP11.55□□□□□ -0.56
HMGB1P12-201ENST00000438594 POTEHQ6S545 545 aa11.54□□□□□ -0.56
HMGB1P12-201ENST00000438594 MYCNP04198 464 aaPredicted RBP11.41□□□□□ -0.58
HMGB1P12-201ENST00000438594 POLA2Q14181 598 aa11.33□□□□□ -0.6
HMGB1P12-201ENST00000438594 SLC4A1APQ9BWU0 796 aaKnown RBP11.31□□□□□ -0.6
HMGB1P12-201ENST00000438594 RBM42Q9BTD8 480 aaKnown RBP11.3□□□□□ -0.6
HMGB1P12-201ENST00000438594 FOXD4L1Q9NU39 408 aa11.22□□□□□ -0.61
HMGB1P12-201ENST00000438594 ATF5Q9Y2D1 282 aaPredicted RBP11.15□□□□□ -0.62
HMGB1P12-201ENST00000438594 CHRDL2Q6WN34 429 aa11.1□□□□□ -0.63
HMGB1P12-201ENST00000438594 ZBTB12Q9Y330 459 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P12-201ENST00000438594 AKT1S1Q96B36 256 aa10.99□□□□□ -0.65
HMGB1P12-201ENST00000438594 OSCARQ8IYS5 282 aa10.98□□□□□ -0.65
HMGB1P12-201ENST00000438594 ZBTB22O15209 634 aa10.97□□□□□ -0.65
HMGB1P12-201ENST00000438594 REM2Q8IYK8 340 aaPredicted RBP10.91□□□□□ -0.66
HMGB1P12-201ENST00000438594 ATXN8OSP0DMR3 200 aa10.83□□□□□ -0.68
HMGB1P12-201ENST00000438594 PIP4P2Q8N4L2 257 aa10.81□□□□□ -0.68
HMGB1P12-201ENST00000438594 PITPNM1O00562 1244 aa10.8□□□□□ -0.68
HMGB1P12-201ENST00000438594 FBLN2P98095 1184 aa10.79□□□□□ -0.68
HMGB1P12-201ENST00000438594 SP7Q8TDD2 431 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P12-201ENST00000438594 HAX1O00165 279 aa10.72□□□□□ -0.69
HMGB1P12-201ENST00000438594 SPDYE2BA6NHP3 402 aa10.7□□□□□ -0.7
HMGB1P12-201ENST00000438594 SPDYE6P0CI01 402 aa10.7□□□□□ -0.7
HMGB1P12-201ENST00000438594 SPDYE2Q495Y8 402 aa10.7□□□□□ -0.7
HMGB1P12-201ENST00000438594 FXR2P51116 673 aaKnown RBP eCLIP10.68□□□□□ -0.7
HMGB1P12-201ENST00000438594 CLEC11AQ9Y240 323 aa10.65□□□□□ -0.7
HMGB1P12-201ENST00000438594 MKRN4PQ13434 485 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P12-201ENST00000438594 ZNF692Q9BU19 519 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P12-201ENST00000438594 SPDYE1Q8NFV5 336 aaPredicted RBP10.58□□□□□ -0.72
HMGB1P12-201ENST00000438594 PRKAR2AP13861 404 aaKnown RBP10.55□□□□□ -0.72
HMGB1P12-201ENST00000438594 SSUH2Q9Y2M2 353 aa10.5□□□□□ -0.73
HMGB1P12-201ENST00000438594 EVX2Q03828 476 aa10.49□□□□□ -0.73
HMGB1P12-201ENST00000438594 PABPN1Q86U42 306 aaKnown RBP eCLIP10.44□□□□□ -0.74
HMGB1P12-201ENST00000438594 CHADLQ6NUI6 762 aa10.42□□□□□ -0.74
HMGB1P12-201ENST00000438594 PRR29P0C7W0 189 aa10.41□□□□□ -0.74
HMGB1P12-201ENST00000438594 CSRNP3Q8WYN3 585 aa10.37□□□□□ -0.75
HMGB1P12-201ENST00000438594 C19orf67A6NJJ6 358 aa10.35□□□□□ -0.75
HMGB1P12-201ENST00000438594 EHMT2Q96KQ7 1210 aa10.28□□□□□ -0.76
HMGB1P12-201ENST00000438594 GABBR2O75899 941 aa10.27□□□□□ -0.77
HMGB1P12-201ENST00000438594 CD44P16070 742 aaKnown RBP10.21□□□□□ -0.77
HMGB1P12-201ENST00000438594 FARP1Q9Y4F1 1045 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P12-201ENST00000438594 LHX8Q68G74 356 aa10.11□□□□□ -0.79
HMGB1P12-201ENST00000438594 SPDYE4A6NLX3 237 aa10.1□□□□□ -0.79
HMGB1P12-201ENST00000438594 STAG3Q9UJ98 1225 aa10.1□□□□□ -0.79
HMGB1P12-201ENST00000438594 ZRANB1Q9UGI0 708 aa10.06□□□□□ -0.8
HMGB1P12-201ENST00000438594 CREBZFQ9NS37 354 aa10.05□□□□□ -0.8
HMGB1P12-201ENST00000438594 DCBLD2Q96PD2 775 aa10.03□□□□□ -0.8
HMGB1P12-201ENST00000438594 POTEIP0CG38 1075 aa10.01□□□□□ -0.81
HMGB1P12-201ENST00000438594 CLCN6P51797 869 aa10□□□□□ -0.81
HMGB1P12-201ENST00000438594 ZNF579Q8NAF0 562 aaKnown RBP9.98□□□□□ -0.81
HMGB1P12-201ENST00000438594 PAK3O75914 559 aaPredicted RBP9.97□□□□□ -0.81
HMGB1P12-201ENST00000438594 GALR2O43603 387 aaPredicted RBP9.92□□□□□ -0.82
HMGB1P12-201ENST00000438594 NPM1P06748 294 aaKnown RBP eCLIP9.92□□□□□ -0.82
HMGB1P12-201ENST00000438594 PHF12Q96QT6 1004 aa9.9□□□□□ -0.82
HMGB1P12-201ENST00000438594 MNX1P50219 401 aaPredicted RBP9.81□□□□□ -0.84
HMGB1P12-201ENST00000438594 TSPYL2Q9H2G4 693 aaPredicted RBP9.78□□□□□ -0.84
HMGB1P12-201ENST00000438594 MS4A3Q96HJ5 214 aa9.74□□□□□ -0.85
HMGB1P12-201ENST00000438594 PLEKHG5O94827 1062 aa9.72□□□□□ -0.85
HMGB1P12-201ENST00000438594 PELP1Q8IZL8 1130 aaKnown RBP9.71□□□□□ -0.86
HMGB1P12-201ENST00000438594 MIER1Q8N108 512 aa9.7□□□□□ -0.86
HMGB1P12-201ENST00000438594 PROM2Q8N271 834 aa9.7□□□□□ -0.86
HMGB1P12-201ENST00000438594 POTEB2H3BUK9 544 aa9.69□□□□□ -0.86
HMGB1P12-201ENST00000438594 OTUD5Q96G74 571 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms