RNA–Protein interactions for RNA: ENST00000437242.1

HMGB1P31-201, Transcript of high mobility group box 1 pseudogene 31, humanhuman

BASIC

Gene HMGB1P31, Length 427 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P31-201ENST00000437242 AEBP2Q6ZN18 517 aaPredicted RBP24.46■■□□□ 1.51
HMGB1P31-201ENST00000437242 CHIC1Q5VXU3 224 aa23.33■■□□□ 1.33
HMGB1P31-201ENST00000437242 SENP3Q9H4L4 574 aaPredicted RBP20.91■□□□□ 0.94
HMGB1P31-201ENST00000437242 PHF23Q9BUL5 403 aaPredicted RBP20.62■□□□□ 0.89
HMGB1P31-201ENST00000437242 FOXD1Q16676 465 aa19.44■□□□□ 0.7
HMGB1P31-201ENST00000437242 PLPPR3Q6T4P5 718 aa18.71■□□□□ 0.59
HMGB1P31-201ENST00000437242 PIAS4Q8N2W9 510 aaPredicted RBP18.23■□□□□ 0.51
HMGB1P31-201ENST00000437242 MSH5O43196 834 aa18.21■□□□□ 0.51
HMGB1P31-201ENST00000437242 PPP6R1Q9UPN7 881 aa18.2■□□□□ 0.5
HMGB1P31-201ENST00000437242 ADRA2BP18089 450 aa18.18■□□□□ 0.5
HMGB1P31-201ENST00000437242 POTEDQ86YR6 584 aa17.6■□□□□ 0.41
HMGB1P31-201ENST00000437242 SCAF1Q9H7N4 1312 aaKnown RBP16.7■□□□□ 0.26
HMGB1P31-201ENST00000437242 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
HMGB1P31-201ENST00000437242 DMRT2Q9Y5R5 561 aa16.57■□□□□ 0.24
HMGB1P31-201ENST00000437242 PPP4R3CPQ6ZMV5 832 aa16.39■□□□□ 0.21
HMGB1P31-201ENST00000437242 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
HMGB1P31-201ENST00000437242 HOXD11P31277 338 aaPredicted RBP15.98■□□□□ 0.15
HMGB1P31-201ENST00000437242 DCAF8L1A6NGE4 600 aa15.95■□□□□ 0.14
HMGB1P31-201ENST00000437242 RNF216Q9NWF9 866 aaPredicted RBP15.91■□□□□ 0.14
HMGB1P31-201ENST00000437242 NCBP3Q53F19 620 aaKnown RBP15.83■□□□□ 0.12
HMGB1P31-201ENST00000437242 CACNB1Q02641 598 aaPredicted RBP15.58■□□□□ 0.08
HMGB1P31-201ENST00000437242 NPM3O75607 178 aaKnown RBP15.55■□□□□ 0.08
HMGB1P31-201ENST00000437242 RNF39Q9H2S5 420 aa15.51■□□□□ 0.07
HMGB1P31-201ENST00000437242 DNAJC5BQ9UF47 199 aa15.41■□□□□ 0.06
HMGB1P31-201ENST00000437242 KCNA4P22459 653 aa15.32■□□□□ 0.04
HMGB1P31-201ENST00000437242 C1QBPQ07021 282 aaKnown RBP15.3■□□□□ 0.04
HMGB1P31-201ENST00000437242 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.28■□□□□ 0.04
HMGB1P31-201ENST00000437242 U3KPZ7 1027 aaPredicted RBP14.93□□□□□ -0.02
HMGB1P31-201ENST00000437242 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
HMGB1P31-201ENST00000437242 CAPN15O75808 1086 aa14.71□□□□□ -0.05
HMGB1P31-201ENST00000437242 SPINK5Q9NQ38 1064 aaPredicted RBP14.69□□□□□ -0.06
HMGB1P31-201ENST00000437242 APLP2Q06481 763 aa14.6□□□□□ -0.07
HMGB1P31-201ENST00000437242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
HMGB1P31-201ENST00000437242 HNRNPUL2Q1KMD3 747 aaKnown RBP14.58□□□□□ -0.08
HMGB1P31-201ENST00000437242 DSG3P32926 999 aa14.55□□□□□ -0.08
HMGB1P31-201ENST00000437242 SLC4A1APQ9BWU0 796 aaKnown RBP14.52□□□□□ -0.09
HMGB1P31-201ENST00000437242 SAMD1Q6SPF0 538 aaPredicted RBP14.49□□□□□ -0.09
HMGB1P31-201ENST00000437242 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
HMGB1P31-201ENST00000437242 ZNF219Q9P2Y4 722 aaPredicted RBP14.47□□□□□ -0.09
HMGB1P31-201ENST00000437242 MYCNP04198 464 aaPredicted RBP14.42□□□□□ -0.1
HMGB1P31-201ENST00000437242 ABCB7O75027 752 aa14.36□□□□□ -0.11
HMGB1P31-201ENST00000437242 FOXD4L1Q9NU39 408 aa14.3□□□□□ -0.12
HMGB1P31-201ENST00000437242 POLA2Q14181 598 aa14.08□□□□□ -0.16
HMGB1P31-201ENST00000437242 ZBTB22O15209 634 aa14.06□□□□□ -0.16
HMGB1P31-201ENST00000437242 ATF5Q9Y2D1 282 aaPredicted RBP14.02□□□□□ -0.17
HMGB1P31-201ENST00000437242 RBM42Q9BTD8 480 aaKnown RBP13.94□□□□□ -0.18
HMGB1P31-201ENST00000437242 ZBTB12Q9Y330 459 aaPredicted RBP13.86□□□□□ -0.19
HMGB1P31-201ENST00000437242 ATXN8OSP0DMR3 200 aa13.84□□□□□ -0.19
HMGB1P31-201ENST00000437242 POTEHQ6S545 545 aa13.82□□□□□ -0.2
HMGB1P31-201ENST00000437242 OSCARQ8IYS5 282 aa13.65□□□□□ -0.22
HMGB1P31-201ENST00000437242 AKT1S1Q96B36 256 aa13.61□□□□□ -0.23
HMGB1P31-201ENST00000437242 CHRDL2Q6WN34 429 aa13.57□□□□□ -0.24
HMGB1P31-201ENST00000437242 FBLN2P98095 1184 aa13.56□□□□□ -0.24
HMGB1P31-201ENST00000437242 CSRNP3Q8WYN3 585 aa13.49□□□□□ -0.25
HMGB1P31-201ENST00000437242 REM2Q8IYK8 340 aaPredicted RBP13.46□□□□□ -0.25
HMGB1P31-201ENST00000437242 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
HMGB1P31-201ENST00000437242 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
HMGB1P31-201ENST00000437242 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
HMGB1P31-201ENST00000437242 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
HMGB1P31-201ENST00000437242 MKRN4PQ13434 485 aaPredicted RBP13.39□□□□□ -0.27
HMGB1P31-201ENST00000437242 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
HMGB1P31-201ENST00000437242 ZNF692Q9BU19 519 aaPredicted RBP13.26□□□□□ -0.29
HMGB1P31-201ENST00000437242 PIP4P2Q8N4L2 257 aa13.25□□□□□ -0.29
HMGB1P31-201ENST00000437242 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
HMGB1P31-201ENST00000437242 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
HMGB1P31-201ENST00000437242 SPDYE1Q8NFV5 336 aaPredicted RBP13.16□□□□□ -0.3
HMGB1P31-201ENST00000437242 CLEC11AQ9Y240 323 aa13.14□□□□□ -0.31
HMGB1P31-201ENST00000437242 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGB1P31-201ENST00000437242 HAX1O00165 279 aa13.02□□□□□ -0.33
HMGB1P31-201ENST00000437242 PRKAR2AP13861 404 aaKnown RBP13□□□□□ -0.33
HMGB1P31-201ENST00000437242 SP7Q8TDD2 431 aaPredicted RBP13□□□□□ -0.33
HMGB1P31-201ENST00000437242 PRR29P0C7W0 189 aa12.93□□□□□ -0.34
HMGB1P31-201ENST00000437242 CHADLQ6NUI6 762 aa12.86□□□□□ -0.35
HMGB1P31-201ENST00000437242 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
HMGB1P31-201ENST00000437242 EVX2Q03828 476 aa12.79□□□□□ -0.36
HMGB1P31-201ENST00000437242 C19orf67A6NJJ6 358 aa12.76□□□□□ -0.37
HMGB1P31-201ENST00000437242 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
HMGB1P31-201ENST00000437242 FARP1Q9Y4F1 1045 aaPredicted RBP12.67□□□□□ -0.38
HMGB1P31-201ENST00000437242 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
HMGB1P31-201ENST00000437242 CREBZFQ9NS37 354 aa12.59□□□□□ -0.39
HMGB1P31-201ENST00000437242 GABBR2O75899 941 aa12.55□□□□□ -0.4
HMGB1P31-201ENST00000437242 PROM2Q8N271 834 aa12.5□□□□□ -0.41
HMGB1P31-201ENST00000437242 ZRANB1Q9UGI0 708 aa12.43□□□□□ -0.42
HMGB1P31-201ENST00000437242 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
HMGB1P31-201ENST00000437242 CLCN6P51797 869 aa12.4□□□□□ -0.42
HMGB1P31-201ENST00000437242 ZNF579Q8NAF0 562 aaKnown RBP12.4□□□□□ -0.42
HMGB1P31-201ENST00000437242 PAK3O75914 559 aaPredicted RBP12.39□□□□□ -0.43
HMGB1P31-201ENST00000437242 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
HMGB1P31-201ENST00000437242 FKBP8Q14318 412 aa12.29□□□□□ -0.44
HMGB1P31-201ENST00000437242 PLEKHG5O94827 1062 aa12.28□□□□□ -0.44
HMGB1P31-201ENST00000437242 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
HMGB1P31-201ENST00000437242 PHF12Q96QT6 1004 aa12.26□□□□□ -0.45
HMGB1P31-201ENST00000437242 POTEIP0CG38 1075 aa12.25□□□□□ -0.45
HMGB1P31-201ENST00000437242 MIER1Q8N108 512 aa12.24□□□□□ -0.45
HMGB1P31-201ENST00000437242 GALR2O43603 387 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P31-201ENST00000437242 LHX8Q68G74 356 aa12.19□□□□□ -0.46
HMGB1P31-201ENST00000437242 PLCD3Q8N3E9 789 aa12.19□□□□□ -0.46
HMGB1P31-201ENST00000437242 TSPYL2Q9H2G4 693 aaPredicted RBP12.18□□□□□ -0.46
HMGB1P31-201ENST00000437242 MS4A3Q96HJ5 214 aa12.1□□□□□ -0.47
HMGB1P31-201ENST00000437242 ZBTB47Q9UFB7 747 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms