RNA–Protein interactions for RNA: ENST00000434424.5

PTPRK-212, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 3

Gene PTPRK, Length 555 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-212ENST00000434424 AEBP2Q6ZN18 517 aaPredicted RBP34.37■■■■□ 3.09
PTPRK-212ENST00000434424 CHIC1Q5VXU3 224 aa32.54■■■□□ 2.8
PTPRK-212ENST00000434424 SENP3Q9H4L4 574 aaPredicted RBP29.19■■■□□ 2.26
PTPRK-212ENST00000434424 PHF23Q9BUL5 403 aaPredicted RBP28.86■■■□□ 2.21
PTPRK-212ENST00000434424 FOXD1Q16676 465 aa27.3■■□□□ 1.96
PTPRK-212ENST00000434424 PLPPR3Q6T4P5 718 aa25.93■■□□□ 1.74
PTPRK-212ENST00000434424 PPP6R1Q9UPN7 881 aa25.55■■□□□ 1.68
PTPRK-212ENST00000434424 MSH5O43196 834 aa25.45■■□□□ 1.66
PTPRK-212ENST00000434424 PIAS4Q8N2W9 510 aaPredicted RBP25.44■■□□□ 1.66
PTPRK-212ENST00000434424 ADRA2BP18089 450 aa25.43■■□□□ 1.66
PTPRK-212ENST00000434424 POTEDQ86YR6 584 aa24.97■■□□□ 1.59
PTPRK-212ENST00000434424 MAPK8IP2Q13387 824 aaPredicted RBP23.4■■□□□ 1.34
PTPRK-212ENST00000434424 DMRT2Q9Y5R5 561 aa23.19■■□□□ 1.3
PTPRK-212ENST00000434424 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
PTPRK-212ENST00000434424 PPP4R3CPQ6ZMV5 832 aa22.77■■□□□ 1.24
PTPRK-212ENST00000434424 HOXD11P31277 338 aaPredicted RBP22.33■■□□□ 1.17
PTPRK-212ENST00000434424 CNKSR2Q8WXI2 1034 aa22.31■■□□□ 1.16
PTPRK-212ENST00000434424 DCAF8L1A6NGE4 600 aa22.17■■□□□ 1.14
PTPRK-212ENST00000434424 RNF216Q9NWF9 866 aaPredicted RBP22.13■■□□□ 1.13
PTPRK-212ENST00000434424 CACNB1Q02641 598 aaPredicted RBP21.86■■□□□ 1.09
PTPRK-212ENST00000434424 NCBP3Q53F19 620 aaKnown RBP21.8■■□□□ 1.08
PTPRK-212ENST00000434424 RNF39Q9H2S5 420 aa21.78■■□□□ 1.08
PTPRK-212ENST00000434424 NPM3O75607 178 aaKnown RBP21.6■■□□□ 1.05
PTPRK-212ENST00000434424 DNAJC5BQ9UF47 199 aa21.52■■□□□ 1.04
PTPRK-212ENST00000434424 C1QBPQ07021 282 aaKnown RBP21.41■■□□□ 1.02
PTPRK-212ENST00000434424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.22■□□□□ 0.994e-9■■■■□ 23.9
PTPRK-212ENST00000434424 KCNA4P22459 653 aa21.18■□□□□ 0.98
PTPRK-212ENST00000434424 U3KPZ7 1027 aaPredicted RBP20.85■□□□□ 0.93
PTPRK-212ENST00000434424 SLC4A2P04920 1241 aa20.68■□□□□ 0.9
PTPRK-212ENST00000434424 SPINK5Q9NQ38 1064 aaPredicted RBP20.56■□□□□ 0.88
PTPRK-212ENST00000434424 CAPN15O75808 1086 aa20.45■□□□□ 0.86
PTPRK-212ENST00000434424 DSG3P32926 999 aa20.39■□□□□ 0.85
PTPRK-212ENST00000434424 TRHP20396 242 aaPredicted RBP20.12■□□□□ 0.81
PTPRK-212ENST00000434424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.11■□□□□ 0.81
PTPRK-212ENST00000434424 HNRNPUL2Q1KMD3 747 aaKnown RBP20.11■□□□□ 0.81
PTPRK-212ENST00000434424 APLP2Q06481 763 aa20.08■□□□□ 0.81
PTPRK-212ENST00000434424 ZNF219Q9P2Y4 722 aaPredicted RBP20.04■□□□□ 0.8
PTPRK-212ENST00000434424 ABCB7O75027 752 aa20.03■□□□□ 0.8
PTPRK-212ENST00000434424 SAMD1Q6SPF0 538 aaPredicted RBP20.03■□□□□ 0.8
PTPRK-212ENST00000434424 SLC4A1APQ9BWU0 796 aaKnown RBP19.93■□□□□ 0.78
PTPRK-212ENST00000434424 MYCNP04198 464 aaPredicted RBP19.91■□□□□ 0.78
PTPRK-212ENST00000434424 FOXD4L1Q9NU39 408 aa19.71■□□□□ 0.75
PTPRK-212ENST00000434424 POLA2Q14181 598 aa19.61■□□□□ 0.73
PTPRK-212ENST00000434424 EHMT2Q96KQ7 1210 aa19.58■□□□□ 0.72
PTPRK-212ENST00000434424 ATF5Q9Y2D1 282 aaPredicted RBP19.58■□□□□ 0.72
PTPRK-212ENST00000434424 ZBTB22O15209 634 aa19.54■□□□□ 0.72
PTPRK-212ENST00000434424 POTEHQ6S545 545 aa19.53■□□□□ 0.72
PTPRK-212ENST00000434424 RBM42Q9BTD8 480 aaKnown RBP19.34■□□□□ 0.69
PTPRK-212ENST00000434424 ZBTB12Q9Y330 459 aaPredicted RBP19.11■□□□□ 0.65
PTPRK-212ENST00000434424 ATXN8OSP0DMR3 200 aa19.08■□□□□ 0.64
PTPRK-212ENST00000434424 CHRDL2Q6WN34 429 aa19.01■□□□□ 0.63
PTPRK-212ENST00000434424 OSCARQ8IYS5 282 aa19■□□□□ 0.63
PTPRK-212ENST00000434424 AKT1S1Q96B36 256 aa18.95■□□□□ 0.62
PTPRK-212ENST00000434424 CSRNP3Q8WYN3 585 aa18.83■□□□□ 0.6
PTPRK-212ENST00000434424 REM2Q8IYK8 340 aaPredicted RBP18.81■□□□□ 0.6
PTPRK-212ENST00000434424 MKRN4PQ13434 485 aaPredicted RBP18.67■□□□□ 0.58
PTPRK-212ENST00000434424 FBLN2P98095 1184 aa18.65■□□□□ 0.58
PTPRK-212ENST00000434424 PITPNM1O00562 1244 aa18.63■□□□□ 0.57
PTPRK-212ENST00000434424 PIP4P2Q8N4L2 257 aa18.59■□□□□ 0.57
PTPRK-212ENST00000434424 SPDYE2BA6NHP3 402 aa18.57■□□□□ 0.56
PTPRK-212ENST00000434424 SPDYE6P0CI01 402 aa18.57■□□□□ 0.56
PTPRK-212ENST00000434424 SPDYE2Q495Y8 402 aa18.57■□□□□ 0.56
PTPRK-212ENST00000434424 FXR2P51116 673 aaKnown RBP eCLIP18.47■□□□□ 0.55
PTPRK-212ENST00000434424 SSUH2Q9Y2M2 353 aa18.38■□□□□ 0.53
PTPRK-212ENST00000434424 ZNF692Q9BU19 519 aaPredicted RBP18.35■□□□□ 0.53
PTPRK-212ENST00000434424 SP7Q8TDD2 431 aaPredicted RBP18.29■□□□□ 0.52
PTPRK-212ENST00000434424 SPDYE1Q8NFV5 336 aaPredicted RBP18.24■□□□□ 0.51
PTPRK-212ENST00000434424 CLEC11AQ9Y240 323 aa18.22■□□□□ 0.51
PTPRK-212ENST00000434424 HAX1O00165 279 aa18.19■□□□□ 0.5
PTPRK-212ENST00000434424 PRKAR2AP13861 404 aaKnown RBP18.11■□□□□ 0.49
PTPRK-212ENST00000434424 EVX2Q03828 476 aa18.1■□□□□ 0.49
PTPRK-212ENST00000434424 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
PTPRK-212ENST00000434424 CHADLQ6NUI6 762 aa17.94■□□□□ 0.46
PTPRK-212ENST00000434424 PRR29P0C7W0 189 aa17.91■□□□□ 0.46
PTPRK-212ENST00000434424 C19orf67A6NJJ6 358 aa17.88■□□□□ 0.45
PTPRK-212ENST00000434424 SPDYE4A6NLX3 237 aa17.68■□□□□ 0.42
PTPRK-212ENST00000434424 FARP1Q9Y4F1 1045 aaPredicted RBP17.65■□□□□ 0.42
PTPRK-212ENST00000434424 GABBR2O75899 941 aa17.62■□□□□ 0.41
PTPRK-212ENST00000434424 CREBZFQ9NS37 354 aa17.54■□□□□ 0.4
PTPRK-212ENST00000434424 CD44P16070 742 aaKnown RBP17.53■□□□□ 0.4
PTPRK-212ENST00000434424 STAG3Q9UJ98 1225 aa17.53■□□□□ 0.4
PTPRK-212ENST00000434424 SLC24A1O60721 1099 aa17.41■□□□□ 0.38
PTPRK-212ENST00000434424 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
PTPRK-212ENST00000434424 PROM2Q8N271 834 aa17.33■□□□□ 0.36
PTPRK-212ENST00000434424 RTN4Q9NQC3 1192 aaKnown RBP17.32■□□□□ 0.36
PTPRK-212ENST00000434424 POTEIP0CG38 1075 aa17.3■□□□□ 0.36
PTPRK-212ENST00000434424 MNX1P50219 401 aaPredicted RBP17.28■□□□□ 0.36
PTPRK-212ENST00000434424 ZRANB1Q9UGI0 708 aa17.28■□□□□ 0.36
PTPRK-212ENST00000434424 ZNF579Q8NAF0 562 aaKnown RBP17.27■□□□□ 0.36
PTPRK-212ENST00000434424 CLCN6P51797 869 aa17.21■□□□□ 0.35
PTPRK-212ENST00000434424 LHX8Q68G74 356 aa17.15■□□□□ 0.34
PTPRK-212ENST00000434424 GALR2O43603 387 aaPredicted RBP17.1■□□□□ 0.33
PTPRK-212ENST00000434424 NPM1P06748 294 aaKnown RBP eCLIP17.1■□□□□ 0.33
PTPRK-212ENST00000434424 PHF12Q96QT6 1004 aa17.08■□□□□ 0.32
PTPRK-212ENST00000434424 DCBLD2Q96PD2 775 aa17.06■□□□□ 0.32
PTPRK-212ENST00000434424 PAK3O75914 559 aaPredicted RBP17.04■□□□□ 0.32
PTPRK-212ENST00000434424 FKBP8Q14318 412 aa16.98■□□□□ 0.31
PTPRK-212ENST00000434424 TSPYL2Q9H2G4 693 aaPredicted RBP16.86■□□□□ 0.29
PTPRK-212ENST00000434424 MIER1Q8N108 512 aa16.85■□□□□ 0.29
PTPRK-212ENST00000434424 MS4A3Q96HJ5 214 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms