RNA–Protein interactions for RNA: ENST00000433627.9

LSM14A-201, Transcript of LSM14A, mRNA processing body assembly factor, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LSM14A, Length 3,424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM14A-201ENST00000433627 NISCHQ9Y2I1 1504 aa29.19■■■□□ 2.26
LSM14A-201ENST00000433627 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
LSM14A-201ENST00000433627 SHROOM4Q9ULL8 1493 aa24.89■■□□□ 1.58
LSM14A-201ENST00000433627 DCAF8L2P0C7V8 631 aa24.71■■□□□ 1.55
LSM14A-201ENST00000433627 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.53
LSM14A-201ENST00000433627 SUPT5HO00267 1087 aaKnown RBP24.25■■□□□ 1.47
LSM14A-201ENST00000433627 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
LSM14A-201ENST00000433627 ABCC9O60706 1549 aa23.67■■□□□ 1.38
LSM14A-201ENST00000433627 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
LSM14A-201ENST00000433627 MYO15BQ96JP2 1530 aa23.26■■□□□ 1.31
LSM14A-201ENST00000433627 CHIC1Q5VXU3 224 aa23.23■■□□□ 1.31
LSM14A-201ENST00000433627 NACADO15069 1562 aa23.18■■□□□ 1.3
LSM14A-201ENST00000433627 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
LSM14A-201ENST00000433627 RB1CC1Q8TDY2 1594 aa22.93■■□□□ 1.26
LSM14A-201ENST00000433627 CECR2Q9BXF3 1484 aa22.86■■□□□ 1.25
LSM14A-201ENST00000433627 MROH2BQ7Z745 1585 aa22.71■■□□□ 1.23
LSM14A-201ENST00000433627 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
LSM14A-201ENST00000433627 LOC105371045A0A1W2PR82 267 aa22.61■■□□□ 1.21
LSM14A-201ENST00000433627 WIZO95785 1651 aa22.57■■□□□ 1.2
LSM14A-201ENST00000433627 TRIM41Q8WV44 630 aa22.56■■□□□ 1.2
LSM14A-201ENST00000433627 UNC13AQ9UPW8 1703 aa22.49■■□□□ 1.19
LSM14A-201ENST00000433627 FAM9AQ8IZU1 332 aaPredicted RBP22.47■■□□□ 1.19
LSM14A-201ENST00000433627 BAZ1AQ9NRL2 1556 aaPredicted RBP22.46■■□□□ 1.19
LSM14A-201ENST00000433627 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.18
LSM14A-201ENST00000433627 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
LSM14A-201ENST00000433627 BICRAQ9NZM4 1560 aa22.26■■□□□ 1.15
LSM14A-201ENST00000433627 PCGF6Q9BYE7 350 aa22.24■■□□□ 1.15
LSM14A-201ENST00000433627 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
LSM14A-201ENST00000433627 CCDC88BA6NC98 1476 aa22.12■■□□□ 1.13
LSM14A-201ENST00000433627 SMARCA2P51531 1590 aa22.04■■□□□ 1.12
LSM14A-201ENST00000433627 ABCC8Q09428 1581 aa21.98■■□□□ 1.11
LSM14A-201ENST00000433627 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
LSM14A-201ENST00000433627 ATAD2BQ9ULI0 1458 aa21.87■■□□□ 1.09
LSM14A-201ENST00000433627 BAZ1BQ9UIG0 1483 aaKnown RBP21.84■■□□□ 1.09
LSM14A-201ENST00000433627 HRCP23327 699 aa21.83■■□□□ 1.09
LSM14A-201ENST00000433627 TRIM26Q12899 539 aaPredicted RBP21.8■■□□□ 1.08
LSM14A-201ENST00000433627 PEG3Q9GZU2 1588 aa21.79■■□□□ 1.08
LSM14A-201ENST00000433627 PPARGC1BQ86YN6 1023 aaKnown RBP21.74■■□□□ 1.07
LSM14A-201ENST00000433627 SOGA1O94964 1423 aa21.71■■□□□ 1.07
LSM14A-201ENST00000433627 WRNQ14191 1432 aaPredicted RBP eCLIP21.66■■□□□ 1.06
LSM14A-201ENST00000433627 RUSC2Q8N2Y8 1516 aa21.61■■□□□ 1.05
LSM14A-201ENST00000433627 UBTFP17480 764 aaKnown RBP21.61■■□□□ 1.05
LSM14A-201ENST00000433627 CSRNP3Q8WYN3 585 aa21.59■■□□□ 1.05
LSM14A-201ENST00000433627 TTBK1Q5TCY1 1321 aaPredicted RBP21.55■■□□□ 1.04
LSM14A-201ENST00000433627 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
LSM14A-201ENST00000433627 NCAPD3P42695 1498 aa21.46■■□□□ 1.03
LSM14A-201ENST00000433627 EEA1Q15075 1411 aa21.45■■□□□ 1.02
LSM14A-201ENST00000433627 CEP162Q5TB80 1403 aa21.43■■□□□ 1.02
LSM14A-201ENST00000433627 RANGAP1P46060 587 aaPredicted RBP21.41■■□□□ 1.02
LSM14A-201ENST00000433627 HMGXB3Q12766 1538 aa21.4■■□□□ 1.02
LSM14A-201ENST00000433627 TNIKQ9UKE5 1360 aa21.37■■□□□ 1.01
LSM14A-201ENST00000433627 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
LSM14A-201ENST00000433627 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
LSM14A-201ENST00000433627 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
LSM14A-201ENST00000433627 CFTRP13569 1480 aa21.2■□□□□ 0.98
LSM14A-201ENST00000433627 CC2D2AQ9P2K1 1620 aa21.19■□□□□ 0.98
LSM14A-201ENST00000433627 RAPGEF2Q9Y4G8 1499 aa21.18■□□□□ 0.98
LSM14A-201ENST00000433627 CUX1P39880 1505 aa21.16■□□□□ 0.98
LSM14A-201ENST00000433627 CLIP1P30622 1438 aa21.14■□□□□ 0.97
LSM14A-201ENST00000433627 KIF21BO75037 1637 aa21.13■□□□□ 0.97
LSM14A-201ENST00000433627 ZEB1P37275 1124 aaPredicted RBP21.12■□□□□ 0.97
LSM14A-201ENST00000433627 BIVM-ERCC5R4GMW8 1640 aa21.12■□□□□ 0.97
LSM14A-201ENST00000433627 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.12■□□□□ 0.97
LSM14A-201ENST00000433627 CADPSQ9ULU8 1353 aa21.1■□□□□ 0.97
LSM14A-201ENST00000433627 CCER1Q8TC90 406 aaPredicted RBP21.06■□□□□ 0.96
LSM14A-201ENST00000433627 APLP2Q06481 763 aa21.05■□□□□ 0.96
LSM14A-201ENST00000433627 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
LSM14A-201ENST00000433627 CUX2O14529 1486 aa20.95■□□□□ 0.95
LSM14A-201ENST00000433627 PRXQ9BXM0 1461 aa20.94■□□□□ 0.94
LSM14A-201ENST00000433627 VPS8Q8N3P4 1428 aa20.93■□□□□ 0.94
LSM14A-201ENST00000433627 NESP48681 1621 aa20.92■□□□□ 0.94
LSM14A-201ENST00000433627 FANCD2Q9BXW9 1451 aa20.91■□□□□ 0.94
LSM14A-201ENST00000433627 HNRNPUL2Q1KMD3 747 aaKnown RBP20.9■□□□□ 0.94
LSM14A-201ENST00000433627 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
LSM14A-201ENST00000433627 FGD5Q6ZNL6 1462 aa20.9■□□□□ 0.94
LSM14A-201ENST00000433627 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
LSM14A-201ENST00000433627 ERICH3Q5RHP9 1530 aa20.87■□□□□ 0.93
LSM14A-201ENST00000433627 IGF1RP08069 1367 aa20.81■□□□□ 0.92
LSM14A-201ENST00000433627 RAD54L2Q9Y4B4 1467 aa20.77■□□□□ 0.92
LSM14A-201ENST00000433627 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.92
LSM14A-201ENST00000433627 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
LSM14A-201ENST00000433627 P3H3Q8IVL6 736 aa20.71■□□□□ 0.91
LSM14A-201ENST00000433627 TOPBP1Q92547 1522 aa20.7■□□□□ 0.9
LSM14A-201ENST00000433627 KANK4Q5T7N3 995 aaPredicted RBP20.7■□□□□ 0.9
LSM14A-201ENST00000433627 DNMBPQ6XZF7 1577 aa20.68■□□□□ 0.9
LSM14A-201ENST00000433627 POLA1P09884 1462 aaPredicted RBP20.68■□□□□ 0.9
LSM14A-201ENST00000433627 ATP1B4Q9UN42 357 aaPredicted RBP20.67■□□□□ 0.9
LSM14A-201ENST00000433627 ARHGAP35Q9NRY4 1499 aa20.66■□□□□ 0.9
LSM14A-201ENST00000433627 LAMC3Q9Y6N6 1575 aa20.61■□□□□ 0.89
LSM14A-201ENST00000433627 TDRD9Q8NDG6 1382 aaKnown RBP20.6■□□□□ 0.89
LSM14A-201ENST00000433627 URB2Q14146 1524 aaKnown RBP20.59■□□□□ 0.89
LSM14A-201ENST00000433627 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
LSM14A-201ENST00000433627 ITGAEP38570 1179 aa20.57■□□□□ 0.88
LSM14A-201ENST00000433627 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
LSM14A-201ENST00000433627 KIF21AQ7Z4S6 1674 aa20.46■□□□□ 0.87
LSM14A-201ENST00000433627 FHOD3Q2V2M9 1422 aa20.46■□□□□ 0.87
LSM14A-201ENST00000433627 GAPVD1Q14C86 1478 aa20.42■□□□□ 0.86
LSM14A-201ENST00000433627 CCNB3Q8WWL7 1395 aa20.38■□□□□ 0.85
LSM14A-201ENST00000433627 FHAD1B1AJZ9 1412 aa20.37■□□□□ 0.85
LSM14A-201ENST00000433627 CUL7Q14999 1698 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms