RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 AEBP2Q6ZN18 517 aaPredicted RBP13.88□□□□□ -0.19
HMGB1P27-201ENST00000431429 CHIC1Q5VXU3 224 aa13.86□□□□□ -0.19
HMGB1P27-201ENST00000431429 PHF23Q9BUL5 403 aaPredicted RBP12.26□□□□□ -0.45
HMGB1P27-201ENST00000431429 SENP3Q9H4L4 574 aaPredicted RBP11.66□□□□□ -0.54
HMGB1P27-201ENST00000431429 PLPPR3Q6T4P5 718 aa11.36□□□□□ -0.59
HMGB1P27-201ENST00000431429 FOXD1Q16676 465 aa10.81□□□□□ -0.68
HMGB1P27-201ENST00000431429 PPP6R1Q9UPN7 881 aa10.68□□□□□ -0.7
HMGB1P27-201ENST00000431429 ADRA2BP18089 450 aa10.65□□□□□ -0.7
HMGB1P27-201ENST00000431429 KCNA4P22459 653 aa10.21□□□□□ -0.77
HMGB1P27-201ENST00000431429 PIAS4Q8N2W9 510 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P27-201ENST00000431429 PPP4R3CPQ6ZMV5 832 aa10.05□□□□□ -0.8
HMGB1P27-201ENST00000431429 NCBP3Q53F19 620 aaKnown RBP9.83□□□□□ -0.84
HMGB1P27-201ENST00000431429 MSH5O43196 834 aa9.79□□□□□ -0.84
HMGB1P27-201ENST00000431429 EHMT2Q96KQ7 1210 aa9.78□□□□□ -0.84
HMGB1P27-201ENST00000431429 NPM3O75607 178 aaKnown RBP9.77□□□□□ -0.85
HMGB1P27-201ENST00000431429 SLC4A1APQ9BWU0 796 aaKnown RBP9.74□□□□□ -0.85
HMGB1P27-201ENST00000431429 CNKSR2Q8WXI2 1034 aa9.71□□□□□ -0.86
HMGB1P27-201ENST00000431429 SCAF1Q9H7N4 1312 aaKnown RBP9.67□□□□□ -0.86
HMGB1P27-201ENST00000431429 CSRNP3Q8WYN3 585 aa9.65□□□□□ -0.86
HMGB1P27-201ENST00000431429 DNAJC5BQ9UF47 199 aa9.6□□□□□ -0.87
HMGB1P27-201ENST00000431429 MAPK8IP2Q13387 824 aaPredicted RBP9.55□□□□□ -0.88
HMGB1P27-201ENST00000431429 ZBTB22O15209 634 aa9.46□□□□□ -0.9
HMGB1P27-201ENST00000431429 RNF216Q9NWF9 866 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P27-201ENST00000431429 DMRT2Q9Y5R5 561 aa9.4□□□□□ -0.9
HMGB1P27-201ENST00000431429 HOXD11P31277 338 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P27-201ENST00000431429 FOXD4L1Q9NU39 408 aa9.29□□□□□ -0.92
HMGB1P27-201ENST00000431429 SLC4A2P04920 1241 aa9.18□□□□□ -0.94
HMGB1P27-201ENST00000431429 MYCNP04198 464 aaPredicted RBP8.99□□□□□ -0.97
HMGB1P27-201ENST00000431429 ATXN8OSP0DMR3 200 aa8.98□□□□□ -0.97
HMGB1P27-201ENST00000431429 U3KPZ7 1027 aaPredicted RBP8.79□□□□□ -1
HMGB1P27-201ENST00000431429 DCAF8L1A6NGE4 600 aa8.77□□□□□ -1.01
HMGB1P27-201ENST00000431429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.77□□□□□ -1.01
HMGB1P27-201ENST00000431429 ATF5Q9Y2D1 282 aaPredicted RBP8.76□□□□□ -1.01
HMGB1P27-201ENST00000431429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 HNRNPUL2Q1KMD3 747 aaKnown RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 SAMD1Q6SPF0 538 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P27-201ENST00000431429 FKBP8Q14318 412 aa8.61□□□□□ -1.03
HMGB1P27-201ENST00000431429 ZNF219Q9P2Y4 722 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P27-201ENST00000431429 APLP2Q06481 763 aa8.52□□□□□ -1.05
HMGB1P27-201ENST00000431429 RNF39Q9H2S5 420 aa8.48□□□□□ -1.05
HMGB1P27-201ENST00000431429 RTN4Q9NQC3 1192 aaKnown RBP8.47□□□□□ -1.05
HMGB1P27-201ENST00000431429 AMER1Q5JTC6 1135 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P27-201ENST00000431429 MKRN4PQ13434 485 aaPredicted RBP8.42□□□□□ -1.06
HMGB1P27-201ENST00000431429 SPINK5Q9NQ38 1064 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P27-201ENST00000431429 PROM2Q8N271 834 aa8.37□□□□□ -1.07
HMGB1P27-201ENST00000431429 C1QBPQ07021 282 aaKnown RBP8.36□□□□□ -1.07
HMGB1P27-201ENST00000431429 POTEDQ86YR6 584 aa8.35□□□□□ -1.07
HMGB1P27-201ENST00000431429 SPDYE4A6NLX3 237 aa8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 TRHP20396 242 aaPredicted RBP8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 POLA2Q14181 598 aa8.3□□□□□ -1.08
HMGB1P27-201ENST00000431429 CAPN15O75808 1086 aa8.26□□□□□ -1.09
HMGB1P27-201ENST00000431429 FBLN2P98095 1184 aa8.26□□□□□ -1.09
HMGB1P27-201ENST00000431429 FBXO3Q9UK99 471 aa8.21□□□□□ -1.1
HMGB1P27-201ENST00000431429 ZBTB12Q9Y330 459 aaPredicted RBP8.2□□□□□ -1.1
HMGB1P27-201ENST00000431429 DSG3P32926 999 aa8.17□□□□□ -1.1
HMGB1P27-201ENST00000431429 SLC24A1O60721 1099 aa8.16□□□□□ -1.1
HMGB1P27-201ENST00000431429 ABCB7O75027 752 aa8.16□□□□□ -1.1
HMGB1P27-201ENST00000431429 VASPP50552 380 aaPredicted RBP8.13□□□□□ -1.11
HMGB1P27-201ENST00000431429 IFNLR1Q8IU57 520 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P27-201ENST00000431429 SSUH2Q9Y2M2 353 aa8.07□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE2BA6NHP3 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE6P0CI01 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 SPDYE2Q495Y8 402 aa8.04□□□□□ -1.12
HMGB1P27-201ENST00000431429 OSCARQ8IYS5 282 aa8.01□□□□□ -1.13
HMGB1P27-201ENST00000431429 ZNF692Q9BU19 519 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P27-201ENST00000431429 PKD2Q13563 968 aa7.96□□□□□ -1.14
HMGB1P27-201ENST00000431429 STAG3Q9UJ98 1225 aa7.94□□□□□ -1.14
HMGB1P27-201ENST00000431429 PABPN1Q86U42 306 aaKnown RBP eCLIP7.91□□□□□ -1.14
HMGB1P27-201ENST00000431429 CACNB1Q02641 598 aaPredicted RBP7.88□□□□□ -1.15
HMGB1P27-201ENST00000431429 SPOCK2Q92563 424 aa7.87□□□□□ -1.15
HMGB1P27-201ENST00000431429 PLCB2Q00722 1185 aa7.83□□□□□ -1.16
HMGB1P27-201ENST00000431429 KLHL34Q8N239 644 aa7.79□□□□□ -1.16
HMGB1P27-201ENST00000431429 PLCD3Q8N3E9 789 aa7.79□□□□□ -1.16
HMGB1P27-201ENST00000431429 MIER1Q8N108 512 aa7.77□□□□□ -1.17
HMGB1P27-201ENST00000431429 ECM2O94769 699 aaPredicted RBP7.74□□□□□ -1.17
HMGB1P27-201ENST00000431429 AKT1S1Q96B36 256 aa7.73□□□□□ -1.17
HMGB1P27-201ENST00000431429 ZBTB47Q9UFB7 747 aaPredicted RBP7.73□□□□□ -1.17
HMGB1P27-201ENST00000431429 RGL2O15211 777 aa7.72□□□□□ -1.17
HMGB1P27-201ENST00000431429 NPM1P06748 294 aaKnown RBP eCLIP7.72□□□□□ -1.17
HMGB1P27-201ENST00000431429 RBM42Q9BTD8 480 aaKnown RBP7.71□□□□□ -1.18
HMGB1P27-201ENST00000431429 BBXQ8WY36 941 aaPredicted RBP7.69□□□□□ -1.18
HMGB1P27-201ENST00000431429 SPDYE1Q8NFV5 336 aaPredicted RBP7.68□□□□□ -1.18
HMGB1P27-201ENST00000431429 PLEKHG5O94827 1062 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 DCAF8L2P0C7V8 631 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 MNX1P50219 401 aaPredicted RBP7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 NUBP1P53384 320 aa7.67□□□□□ -1.18
HMGB1P27-201ENST00000431429 TRIM41Q8WV44 630 aa7.66□□□□□ -1.18
HMGB1P27-201ENST00000431429 CREBZFQ9NS37 354 aa7.65□□□□□ -1.18
HMGB1P27-201ENST00000431429 REM2Q8IYK8 340 aaPredicted RBP7.64□□□□□ -1.19
HMGB1P27-201ENST00000431429 DNAJC5Q9H3Z4 198 aa7.62□□□□□ -1.19
HMGB1P27-201ENST00000431429 HAP1P54257 671 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 RNF25Q96BH1 459 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 CIZ1Q9ULV3 898 aaPredicted RBP7.61□□□□□ -1.19
HMGB1P27-201ENST00000431429 GSE1Q14687 1217 aa7.6□□□□□ -1.19
HMGB1P27-201ENST00000431429 VSIG10Q8N0Z9 540 aa7.6□□□□□ -1.19
HMGB1P27-201ENST00000431429 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.59□□□□□ -1.19
HMGB1P27-201ENST00000431429 PRR29P0C7W0 189 aa7.57□□□□□ -1.2
HMGB1P27-201ENST00000431429 HS6ST3Q8IZP7 471 aa7.57□□□□□ -1.2
HMGB1P27-201ENST00000431429 PITPNM1O00562 1244 aa7.56□□□□□ -1.2
HMGB1P27-201ENST00000431429 CHRM1P11229 460 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms