RNA–Protein interactions for RNA: ENST00000429490.5

SGMS1-203, Transcript of sphingomyelin synthase 1, humanhuman

TSL 5 BASIC

Gene SGMS1, Length 3,634 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-203ENST00000429490 NISCHQ9Y2I1 1504 aa25.5■■□□□ 1.67
SGMS1-203ENST00000429490 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
SGMS1-203ENST00000429490 SUPT5HO00267 1087 aaKnown RBP23.64■■□□□ 1.38
SGMS1-203ENST00000429490 DCAF8L2P0C7V8 631 aa23.45■■□□□ 1.34
SGMS1-203ENST00000429490 PCGF6Q9BYE7 350 aa22.74■■□□□ 1.23
SGMS1-203ENST00000429490 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
SGMS1-203ENST00000429490 HRCP23327 699 aa22.34■■□□□ 1.17
SGMS1-203ENST00000429490 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
SGMS1-203ENST00000429490 PPARGC1BQ86YN6 1023 aaKnown RBP22.28■■□□□ 1.16
SGMS1-203ENST00000429490 LOC105371045A0A1W2PR82 267 aa22.14■■□□□ 1.13
SGMS1-203ENST00000429490 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
SGMS1-203ENST00000429490 MYO15BQ96JP2 1530 aa21.75■■□□□ 1.07
SGMS1-203ENST00000429490 TRIM26Q12899 539 aaPredicted RBP21.69■■□□□ 1.06
SGMS1-203ENST00000429490 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
SGMS1-203ENST00000429490 TTBK1Q5TCY1 1321 aaPredicted RBP21.68■■□□□ 1.06
SGMS1-203ENST00000429490 ZEB1P37275 1124 aaPredicted RBP21.44■■□□□ 1.02
SGMS1-203ENST00000429490 ZCCHC6Q5VYS8 1495 aaKnown RBP21.43■■□□□ 1.02
SGMS1-203ENST00000429490 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
SGMS1-203ENST00000429490 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.19■□□□□ 0.98
SGMS1-203ENST00000429490 DCAF1Q9Y4B6 1507 aa21.12■□□□□ 0.97
SGMS1-203ENST00000429490 PELP1Q8IZL8 1130 aaKnown RBP21.09■□□□□ 0.97
SGMS1-203ENST00000429490 YTHDC1Q96MU7 727 aaKnown RBP21.05■□□□□ 0.96
SGMS1-203ENST00000429490 RANGAP1P46060 587 aaPredicted RBP21.01■□□□□ 0.95
SGMS1-203ENST00000429490 CENPBP07199 599 aaPredicted RBP20.99■□□□□ 0.95
SGMS1-203ENST00000429490 UBTFP17480 764 aaKnown RBP20.93■□□□□ 0.94
SGMS1-203ENST00000429490 SCAF1Q9H7N4 1312 aaKnown RBP20.91■□□□□ 0.94
SGMS1-203ENST00000429490 DIEXFQ68CQ4 756 aaKnown RBP20.84■□□□□ 0.93
SGMS1-203ENST00000429490 CCDC180Q9P1Z9 1646 aa20.8■□□□□ 0.92
SGMS1-203ENST00000429490 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
SGMS1-203ENST00000429490 APLP2Q06481 763 aa20.76■□□□□ 0.91
SGMS1-203ENST00000429490 HNRNPUL2Q1KMD3 747 aaKnown RBP20.72■□□□□ 0.91
SGMS1-203ENST00000429490 NEUROD1Q13562 356 aa20.68■□□□□ 0.9
SGMS1-203ENST00000429490 ACIN1Q9UKV3 1341 aaKnown RBP20.68■□□□□ 0.9
SGMS1-203ENST00000429490 SCRIBQ14160 1630 aa20.64■□□□□ 0.89
SGMS1-203ENST00000429490 RSF1Q96T23 1441 aaPredicted RBP20.6■□□□□ 0.89
SGMS1-203ENST00000429490 ABCC9O60706 1549 aa20.54■□□□□ 0.88
SGMS1-203ENST00000429490 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
SGMS1-203ENST00000429490 ITGAEP38570 1179 aa20.34■□□□□ 0.85
SGMS1-203ENST00000429490 RB1CC1Q8TDY2 1594 aa20.32■□□□□ 0.84
SGMS1-203ENST00000429490 CSRNP3Q8WYN3 585 aa20.26■□□□□ 0.83
SGMS1-203ENST00000429490 PABPN1Q86U42 306 aaKnown RBP eCLIP20.25■□□□□ 0.83
SGMS1-203ENST00000429490 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
SGMS1-203ENST00000429490 MIER1Q8N108 512 aa20.2■□□□□ 0.82
SGMS1-203ENST00000429490 ATP1B4Q9UN42 357 aaPredicted RBP20.18■□□□□ 0.82
SGMS1-203ENST00000429490 MYT1Q01538 1121 aa20.15■□□□□ 0.82
SGMS1-203ENST00000429490 CEP162Q5TB80 1403 aa20.07■□□□□ 0.8
SGMS1-203ENST00000429490 BCANQ96GW7 911 aa20.03■□□□□ 0.8
SGMS1-203ENST00000429490 MROH2BQ7Z745 1585 aa20.02■□□□□ 0.8
SGMS1-203ENST00000429490 SOGA1O94964 1423 aa19.96■□□□□ 0.79
SGMS1-203ENST00000429490 ABCC8Q09428 1581 aa19.9■□□□□ 0.78
SGMS1-203ENST00000429490 CCDC88BA6NC98 1476 aa19.89■□□□□ 0.77
SGMS1-203ENST00000429490 NEFLP07196 543 aa19.87■□□□□ 0.77
SGMS1-203ENST00000429490 WIZO95785 1651 aa19.85■□□□□ 0.77
SGMS1-203ENST00000429490 TNIKQ9UKE5 1360 aa19.82■□□□□ 0.76
SGMS1-203ENST00000429490 CLIP1P30622 1438 aa19.77■□□□□ 0.76
SGMS1-203ENST00000429490 FAM50AQ14320 339 aaKnown RBP19.77■□□□□ 0.75
SGMS1-203ENST00000429490 RUSC2Q8N2Y8 1516 aa19.72■□□□□ 0.75
SGMS1-203ENST00000429490 GOLGA3Q08378 1498 aa19.69■□□□□ 0.74
SGMS1-203ENST00000429490 HIRIP3Q9BW71 556 aaPredicted RBP19.68■□□□□ 0.74
SGMS1-203ENST00000429490 ERICH6Q7L0X2 663 aa19.66■□□□□ 0.74
SGMS1-203ENST00000429490 DDX10Q13206 875 aaKnown RBP19.66■□□□□ 0.74
SGMS1-203ENST00000429490 CNGB1Q14028 1251 aaPredicted RBP19.66■□□□□ 0.74
SGMS1-203ENST00000429490 P3H3Q8IVL6 736 aa19.66■□□□□ 0.74
SGMS1-203ENST00000429490 WRNQ14191 1432 aaPredicted RBP eCLIP19.64■□□□□ 0.735e-6■■■■■ 29.2
SGMS1-203ENST00000429490 NACADO15069 1562 aa19.63■□□□□ 0.73
SGMS1-203ENST00000429490 FKBP8Q14318 412 aa19.63■□□□□ 0.73
SGMS1-203ENST00000429490 BAZ1AQ9NRL2 1556 aaPredicted RBP19.61■□□□□ 0.73
SGMS1-203ENST00000429490 EEA1Q15075 1411 aa19.58■□□□□ 0.73
SGMS1-203ENST00000429490 SUPT16HQ9Y5B9 1047 aaKnown RBP19.58■□□□□ 0.72
SGMS1-203ENST00000429490 TRIM52Q96A61 297 aa19.57■□□□□ 0.72
SGMS1-203ENST00000429490 KANK4Q5T7N3 995 aaPredicted RBP19.51■□□□□ 0.71
SGMS1-203ENST00000429490 CEP164Q9UPV0 1460 aa19.49■□□□□ 0.71
SGMS1-203ENST00000429490 ANP32CO43423 234 aa19.48■□□□□ 0.71
SGMS1-203ENST00000429490 KCNH8Q96L42 1107 aa19.46■□□□□ 0.71
SGMS1-203ENST00000429490 POLR3GLQ9BT43 218 aa19.45■□□□□ 0.7
SGMS1-203ENST00000429490 SIN3AQ96ST3 1273 aa19.42■□□□□ 0.7
SGMS1-203ENST00000429490 VPS8Q8N3P4 1428 aa19.42■□□□□ 0.7
SGMS1-203ENST00000429490 IRX6P78412 446 aaPredicted RBP19.38■□□□□ 0.69
SGMS1-203ENST00000429490 TOP2AP11388 1531 aaKnown RBP19.37■□□□□ 0.69
SGMS1-203ENST00000429490 CLSPNQ9HAW4 1339 aa19.35■□□□□ 0.69
SGMS1-203ENST00000429490 RAPGEF2Q9Y4G8 1499 aa19.34■□□□□ 0.69
SGMS1-203ENST00000429490 TSHZ2Q9NRE2 1034 aa19.31■□□□□ 0.68
SGMS1-203ENST00000429490 HNRNPUQ00839 825 aaKnown RBP eCLIP19.29■□□□□ 0.68
SGMS1-203ENST00000429490 ARID3CA6NKF2 412 aa19.28■□□□□ 0.68
SGMS1-203ENST00000429490 DHX57Q6P158 1386 aaKnown RBP19.27■□□□□ 0.68
SGMS1-203ENST00000429490 ANP32EQ9BTT0 268 aa19.26■□□□□ 0.67
SGMS1-203ENST00000429490 SMARCA2P51531 1590 aa19.26■□□□□ 0.67
SGMS1-203ENST00000429490 CCNB3Q8WWL7 1395 aa19.22■□□□□ 0.67
SGMS1-203ENST00000429490 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
SGMS1-203ENST00000429490 CDK11AQ9UQ88 783 aaPredicted RBP19.22■□□□□ 0.67
SGMS1-203ENST00000429490 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
SGMS1-203ENST00000429490 TONSLQ96HA7 1378 aa19.2■□□□□ 0.66
SGMS1-203ENST00000429490 CHIC2Q9UKJ5 165 aa19.16■□□□□ 0.66
SGMS1-203ENST00000429490 SENP3-EIF4A1A0A087X0R7 540 aa19.15■□□□□ 0.66
SGMS1-203ENST00000429490 FAM9BQ8IZU0 186 aa19.15■□□□□ 0.66
SGMS1-203ENST00000429490 RAB3GAP2Q9H2M9 1393 aa19.13■□□□□ 0.65
SGMS1-203ENST00000429490 ZNF326Q5BKZ1 582 aaKnown RBP19.13■□□□□ 0.65
SGMS1-203ENST00000429490 KIF27Q86VH2 1401 aa19.09■□□□□ 0.65
SGMS1-203ENST00000429490 RBM19Q9Y4C8 960 aaKnown RBP19.08■□□□□ 0.65
SGMS1-203ENST00000429490 RRP7BPQ9NSQ0 103 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms