RNA–Protein interactions for RNA: ENST00000428761.1

LINC00348-201, long intergenic non-protein coding RNA 348, humanhuman

TSL 3 BASIC

Gene LINC00348, Length 948 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00348-201ENST00000428761 AEBP2Q6ZN18 517 aaPredicted RBP27.81■■■□□ 2.04
LINC00348-201ENST00000428761 CHIC1Q5VXU3 224 aa26.3■■□□□ 1.8
LINC00348-201ENST00000428761 SENP3Q9H4L4 574 aaPredicted RBP23.73■■□□□ 1.39
LINC00348-201ENST00000428761 PHF23Q9BUL5 403 aaPredicted RBP23.43■■□□□ 1.34
LINC00348-201ENST00000428761 FOXD1Q16676 465 aa22.14■■□□□ 1.13
LINC00348-201ENST00000428761 PLPPR3Q6T4P5 718 aa20.98■□□□□ 0.95
LINC00348-201ENST00000428761 MSH5O43196 834 aa20.74■□□□□ 0.91
LINC00348-201ENST00000428761 PIAS4Q8N2W9 510 aaPredicted RBP20.69■□□□□ 0.9
LINC00348-201ENST00000428761 PPP6R1Q9UPN7 881 aa20.65■□□□□ 0.9
LINC00348-201ENST00000428761 ADRA2BP18089 450 aa20.59■□□□□ 0.89
LINC00348-201ENST00000428761 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
LINC00348-201ENST00000428761 MAPK8IP2Q13387 824 aaPredicted RBP18.96■□□□□ 0.63
LINC00348-201ENST00000428761 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
LINC00348-201ENST00000428761 DMRT2Q9Y5R5 561 aa18.78■□□□□ 0.6
LINC00348-201ENST00000428761 PPP4R3CPQ6ZMV5 832 aa18.4■□□□□ 0.54
LINC00348-201ENST00000428761 DCAF8L1A6NGE4 600 aa18.14■□□□□ 0.49
LINC00348-201ENST00000428761 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
LINC00348-201ENST00000428761 HOXD11P31277 338 aaPredicted RBP18.04■□□□□ 0.48
LINC00348-201ENST00000428761 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
LINC00348-201ENST00000428761 RNF216Q9NWF9 866 aaPredicted RBP17.9■□□□□ 0.46
LINC00348-201ENST00000428761 RNF39Q9H2S5 420 aa17.69■□□□□ 0.42
LINC00348-201ENST00000428761 NCBP3Q53F19 620 aaKnown RBP17.66■□□□□ 0.42
LINC00348-201ENST00000428761 C1QBPQ07021 282 aaKnown RBP17.42■□□□□ 0.38
LINC00348-201ENST00000428761 NPM3O75607 178 aaKnown RBP17.39■□□□□ 0.37
LINC00348-201ENST00000428761 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.37
LINC00348-201ENST00000428761 KCNA4P22459 653 aa17.38■□□□□ 0.37
LINC00348-201ENST00000428761 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.36
LINC00348-201ENST00000428761 U3KPZ7 1027 aaPredicted RBP16.85■□□□□ 0.29
LINC00348-201ENST00000428761 CAPN15O75808 1086 aa16.68■□□□□ 0.26
LINC00348-201ENST00000428761 SPINK5Q9NQ38 1064 aaPredicted RBP16.67■□□□□ 0.26
LINC00348-201ENST00000428761 SLC4A2P04920 1241 aa16.63■□□□□ 0.25
LINC00348-201ENST00000428761 DSG3P32926 999 aa16.54■□□□□ 0.24
LINC00348-201ENST00000428761 SLC4A1APQ9BWU0 796 aaKnown RBP16.49■□□□□ 0.23
LINC00348-201ENST00000428761 TRHP20396 242 aaPredicted RBP16.4■□□□□ 0.22
LINC00348-201ENST00000428761 APLP2Q06481 763 aa16.37■□□□□ 0.21
LINC00348-201ENST00000428761 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
LINC00348-201ENST00000428761 HNRNPUL2Q1KMD3 747 aaKnown RBP16.34■□□□□ 0.21
LINC00348-201ENST00000428761 ZNF219Q9P2Y4 722 aaPredicted RBP16.3■□□□□ 0.2
LINC00348-201ENST00000428761 ABCB7O75027 752 aa16.29■□□□□ 0.2
LINC00348-201ENST00000428761 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
LINC00348-201ENST00000428761 MYCNP04198 464 aaPredicted RBP16.08■□□□□ 0.16
LINC00348-201ENST00000428761 ZBTB22O15209 634 aa16.02■□□□□ 0.16
LINC00348-201ENST00000428761 POTEHQ6S545 545 aa16■□□□□ 0.15
LINC00348-201ENST00000428761 FOXD4L1Q9NU39 408 aa16■□□□□ 0.15
LINC00348-201ENST00000428761 POLA2Q14181 598 aa15.91■□□□□ 0.14
LINC00348-201ENST00000428761 EHMT2Q96KQ7 1210 aa15.84■□□□□ 0.13
LINC00348-201ENST00000428761 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
LINC00348-201ENST00000428761 RBM42Q9BTD8 480 aaKnown RBP15.78■□□□□ 0.12
LINC00348-201ENST00000428761 ATF5Q9Y2D1 282 aaPredicted RBP15.75■□□□□ 0.11
LINC00348-201ENST00000428761 ZBTB12Q9Y330 459 aaPredicted RBP15.52■□□□□ 0.08
LINC00348-201ENST00000428761 CHRDL2Q6WN34 429 aa15.5■□□□□ 0.07
LINC00348-201ENST00000428761 ATXN8OSP0DMR3 200 aa15.46■□□□□ 0.07
LINC00348-201ENST00000428761 AKT1S1Q96B36 256 aa15.4■□□□□ 0.06
LINC00348-201ENST00000428761 OSCARQ8IYS5 282 aa15.39■□□□□ 0.05
LINC00348-201ENST00000428761 REM2Q8IYK8 340 aaPredicted RBP15.28■□□□□ 0.04
LINC00348-201ENST00000428761 FBLN2P98095 1184 aa15.15■□□□□ 0.02
LINC00348-201ENST00000428761 PITPNM1O00562 1244 aa15.11■□□□□ 0.01
LINC00348-201ENST00000428761 PIP4P2Q8N4L2 257 aa15.11■□□□□ 0.01
LINC00348-201ENST00000428761 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
LINC00348-201ENST00000428761 SPDYE6P0CI01 402 aa15.05■□□□□ -0
LINC00348-201ENST00000428761 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
LINC00348-201ENST00000428761 MKRN4PQ13434 485 aaPredicted RBP14.99□□□□□ -0.01
LINC00348-201ENST00000428761 FXR2P51116 673 aaKnown RBP eCLIP14.97□□□□□ -0.01
LINC00348-201ENST00000428761 SP7Q8TDD2 431 aaPredicted RBP14.94□□□□□ -0.02
LINC00348-201ENST00000428761 HAX1O00165 279 aa14.91□□□□□ -0.02
LINC00348-201ENST00000428761 ZNF692Q9BU19 519 aaPredicted RBP14.9□□□□□ -0.02
LINC00348-201ENST00000428761 CLEC11AQ9Y240 323 aa14.87□□□□□ -0.03
LINC00348-201ENST00000428761 SPDYE1Q8NFV5 336 aaPredicted RBP14.83□□□□□ -0.04
LINC00348-201ENST00000428761 SSUH2Q9Y2M2 353 aa14.81□□□□□ -0.04
LINC00348-201ENST00000428761 PRKAR2AP13861 404 aaKnown RBP14.74□□□□□ -0.05
LINC00348-201ENST00000428761 EVX2Q03828 476 aa14.68□□□□□ -0.06
LINC00348-201ENST00000428761 PABPN1Q86U42 306 aaKnown RBP eCLIP14.67□□□□□ -0.06
LINC00348-201ENST00000428761 PRR29P0C7W0 189 aa14.58□□□□□ -0.08
LINC00348-201ENST00000428761 CHADLQ6NUI6 762 aa14.58□□□□□ -0.08
LINC00348-201ENST00000428761 C19orf67A6NJJ6 358 aa14.5□□□□□ -0.09
LINC00348-201ENST00000428761 SPDYE4A6NLX3 237 aa14.37□□□□□ -0.11
LINC00348-201ENST00000428761 GABBR2O75899 941 aa14.35□□□□□ -0.11
LINC00348-201ENST00000428761 FARP1Q9Y4F1 1045 aaPredicted RBP14.32□□□□□ -0.12
LINC00348-201ENST00000428761 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.13
LINC00348-201ENST00000428761 FKBP8Q14318 412 aa14.24□□□□□ -0.13
LINC00348-201ENST00000428761 STAG3Q9UJ98 1225 aa14.22□□□□□ -0.13
LINC00348-201ENST00000428761 CREBZFQ9NS37 354 aa14.16□□□□□ -0.14
LINC00348-201ENST00000428761 PROM2Q8N271 834 aa14.14□□□□□ -0.15
LINC00348-201ENST00000428761 ZRANB1Q9UGI0 708 aa14.06□□□□□ -0.16
LINC00348-201ENST00000428761 LHX8Q68G74 356 aa14.04□□□□□ -0.16
LINC00348-201ENST00000428761 CLCN6P51797 869 aa14.03□□□□□ -0.16
LINC00348-201ENST00000428761 POTEIP0CG38 1075 aa14.02□□□□□ -0.17
LINC00348-201ENST00000428761 ZNF579Q8NAF0 562 aaKnown RBP13.99□□□□□ -0.17
LINC00348-201ENST00000428761 DCBLD2Q96PD2 775 aa13.97□□□□□ -0.17
LINC00348-201ENST00000428761 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
LINC00348-201ENST00000428761 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
LINC00348-201ENST00000428761 GALR2O43603 387 aaPredicted RBP13.87□□□□□ -0.19
LINC00348-201ENST00000428761 MNX1P50219 401 aaPredicted RBP13.87□□□□□ -0.19
LINC00348-201ENST00000428761 PHF12Q96QT6 1004 aa13.86□□□□□ -0.19
LINC00348-201ENST00000428761 FBXO3Q9UK99 471 aa13.75□□□□□ -0.21
LINC00348-201ENST00000428761 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
LINC00348-201ENST00000428761 MIER1Q8N108 512 aa13.67□□□□□ -0.22
LINC00348-201ENST00000428761 MS4A3Q96HJ5 214 aa13.65□□□□□ -0.22
LINC00348-201ENST00000428761 PLEKHG5O94827 1062 aa13.64□□□□□ -0.23
LINC00348-201ENST00000428761 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 238.9 ms