RNA–Protein interactions for RNA: ENST00000426778.5

ERCC3-202, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC3, Length 2,916 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-202ENST00000426778 NISCHQ9Y2I1 1504 aa29.05■■■□□ 2.24
ERCC3-202ENST00000426778 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
ERCC3-202ENST00000426778 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
ERCC3-202ENST00000426778 DCAF8L2P0C7V8 631 aa24.74■■□□□ 1.55
ERCC3-202ENST00000426778 ZCCHC6Q5VYS8 1495 aaKnown RBP24.56■■□□□ 1.52
ERCC3-202ENST00000426778 CCDC180Q9P1Z9 1646 aa24.34■■□□□ 1.49
ERCC3-202ENST00000426778 MYO15BQ96JP2 1530 aa24.26■■□□□ 1.47
ERCC3-202ENST00000426778 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
ERCC3-202ENST00000426778 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
ERCC3-202ENST00000426778 LOC105371045A0A1W2PR82 267 aa23.79■■□□□ 1.4
ERCC3-202ENST00000426778 HRCP23327 699 aa23.77■■□□□ 1.4
ERCC3-202ENST00000426778 PPARGC1BQ86YN6 1023 aaKnown RBP23.63■■□□□ 1.37
ERCC3-202ENST00000426778 DCAF1Q9Y4B6 1507 aa23.52■■□□□ 1.36
ERCC3-202ENST00000426778 EHMT2Q96KQ7 1210 aa23.36■■□□□ 1.33
ERCC3-202ENST00000426778 SCRIBQ14160 1630 aa23.33■■□□□ 1.33
ERCC3-202ENST00000426778 FAM9AQ8IZU1 332 aaPredicted RBP23.3■■□□□ 1.32
ERCC3-202ENST00000426778 ABCC9O60706 1549 aa23.21■■□□□ 1.31
ERCC3-202ENST00000426778 RSF1Q96T23 1441 aaPredicted RBP23.18■■□□□ 1.3
ERCC3-202ENST00000426778 TRIM41Q8WV44 630 aa23.15■■□□□ 1.3
ERCC3-202ENST00000426778 TRIM26Q12899 539 aaPredicted RBP23.1■■□□□ 1.29
ERCC3-202ENST00000426778 RB1CC1Q8TDY2 1594 aa23.05■■□□□ 1.28
ERCC3-202ENST00000426778 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
ERCC3-202ENST00000426778 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
ERCC3-202ENST00000426778 WIZO95785 1651 aa22.67■■□□□ 1.22
ERCC3-202ENST00000426778 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
ERCC3-202ENST00000426778 NACADO15069 1562 aa22.55■■□□□ 1.2
ERCC3-202ENST00000426778 ZEB1P37275 1124 aaPredicted RBP22.49■■□□□ 1.19
ERCC3-202ENST00000426778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.46■■□□□ 1.19
ERCC3-202ENST00000426778 ABCC8Q09428 1581 aa22.34■■□□□ 1.17
ERCC3-202ENST00000426778 BAZ1AQ9NRL2 1556 aaPredicted RBP22.3■■□□□ 1.16
ERCC3-202ENST00000426778 CCER1Q8TC90 406 aaPredicted RBP22.29■■□□□ 1.16
ERCC3-202ENST00000426778 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
ERCC3-202ENST00000426778 PABPN1Q86U42 306 aaKnown RBP eCLIP22.21■■□□□ 1.15
ERCC3-202ENST00000426778 EIF4G1Q04637 1599 aaKnown RBP22.19■■□□□ 1.14
ERCC3-202ENST00000426778 SCAF1Q9H7N4 1312 aaKnown RBP22.17■■□□□ 1.14
ERCC3-202ENST00000426778 SOGA1O94964 1423 aa22.17■■□□□ 1.14
ERCC3-202ENST00000426778 UBTFP17480 764 aaKnown RBP22.12■■□□□ 1.13
ERCC3-202ENST00000426778 RUSC2Q8N2Y8 1516 aa22.1■■□□□ 1.13
ERCC3-202ENST00000426778 TOP2AP11388 1531 aaKnown RBP22.09■■□□□ 1.13
ERCC3-202ENST00000426778 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
ERCC3-202ENST00000426778 SMARCA2P51531 1590 aa22.06■■□□□ 1.12
ERCC3-202ENST00000426778 CEP162Q5TB80 1403 aa22.05■■□□□ 1.12
ERCC3-202ENST00000426778 UNC13AQ9UPW8 1703 aa22.01■■□□□ 1.11
ERCC3-202ENST00000426778 CSRNP3Q8WYN3 585 aa21.98■■□□□ 1.11
ERCC3-202ENST00000426778 RANGAP1P46060 587 aaPredicted RBP21.98■■□□□ 1.11
ERCC3-202ENST00000426778 DIEXFQ68CQ4 756 aaKnown RBP21.9■■□□□ 1.1
ERCC3-202ENST00000426778 NEUROD1Q13562 356 aa21.88■■□□□ 1.09
ERCC3-202ENST00000426778 TNIKQ9UKE5 1360 aa21.86■■□□□ 1.09
ERCC3-202ENST00000426778 HNRNPUL2Q1KMD3 747 aaKnown RBP21.84■■□□□ 1.09
ERCC3-202ENST00000426778 WRNQ14191 1432 aaPredicted RBP eCLIP21.84■■□□□ 1.09
ERCC3-202ENST00000426778 ACIN1Q9UKV3 1341 aaKnown RBP21.77■■□□□ 1.08
ERCC3-202ENST00000426778 GOLGA3Q08378 1498 aa21.72■■□□□ 1.07
ERCC3-202ENST00000426778 BICRAQ9NZM4 1560 aa21.72■■□□□ 1.07
ERCC3-202ENST00000426778 YTHDC1Q96MU7 727 aaKnown RBP21.69■■□□□ 1.06
ERCC3-202ENST00000426778 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
ERCC3-202ENST00000426778 GTF3C3Q9Y5Q9 886 aa21.68■■□□□ 1.06
ERCC3-202ENST00000426778 EEA1Q15075 1411 aa21.67■■□□□ 1.06
ERCC3-202ENST00000426778 CLIP1P30622 1438 aa21.6■■□□□ 1.05
ERCC3-202ENST00000426778 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
ERCC3-202ENST00000426778 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
ERCC3-202ENST00000426778 CENPBP07199 599 aaPredicted RBP21.55■■□□□ 1.04
ERCC3-202ENST00000426778 APLP2Q06481 763 aa21.55■■□□□ 1.04
ERCC3-202ENST00000426778 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
ERCC3-202ENST00000426778 ATAD2BQ9ULI0 1458 aa21.53■■□□□ 1.04
ERCC3-202ENST00000426778 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.04
ERCC3-202ENST00000426778 PELP1Q8IZL8 1130 aaKnown RBP21.47■■□□□ 1.03
ERCC3-202ENST00000426778 MIER1Q8N108 512 aa21.47■■□□□ 1.03
ERCC3-202ENST00000426778 PEG3Q9GZU2 1588 aa21.44■■□□□ 1.02
ERCC3-202ENST00000426778 VPS8Q8N3P4 1428 aa21.44■■□□□ 1.02
ERCC3-202ENST00000426778 KIF21BO75037 1637 aa21.42■■□□□ 1.02
ERCC3-202ENST00000426778 KANK4Q5T7N3 995 aaPredicted RBP21.34■■□□□ 1.01
ERCC3-202ENST00000426778 ITGAEP38570 1179 aa21.3■■□□□ 1
ERCC3-202ENST00000426778 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
ERCC3-202ENST00000426778 ARAP1Q96P48 1450 aa21.18■□□□□ 0.98
ERCC3-202ENST00000426778 DHX57Q6P158 1386 aaKnown RBP21.13■□□□□ 0.97
ERCC3-202ENST00000426778 PRXQ9BXM0 1461 aa21.12■□□□□ 0.97
ERCC3-202ENST00000426778 CUX1P39880 1505 aa21.12■□□□□ 0.97
ERCC3-202ENST00000426778 BIVM-ERCC5R4GMW8 1640 aa21.09■□□□□ 0.97
ERCC3-202ENST00000426778 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
ERCC3-202ENST00000426778 P3H3Q8IVL6 736 aa21.01■□□□□ 0.95
ERCC3-202ENST00000426778 ERICH3Q5RHP9 1530 aa21.01■□□□□ 0.95
ERCC3-202ENST00000426778 ATP1B4Q9UN42 357 aaPredicted RBP21.01■□□□□ 0.95
ERCC3-202ENST00000426778 ARHGAP35Q9NRY4 1499 aa20.98■□□□□ 0.95
ERCC3-202ENST00000426778 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
ERCC3-202ENST00000426778 CCNB3Q8WWL7 1395 aa20.94■□□□□ 0.94
ERCC3-202ENST00000426778 CUX2O14529 1486 aa20.92■□□□□ 0.94
ERCC3-202ENST00000426778 KCNH8Q96L42 1107 aa20.91■□□□□ 0.94
ERCC3-202ENST00000426778 CFTRP13569 1480 aa20.9■□□□□ 0.94
ERCC3-202ENST00000426778 RRBP1Q9P2E9 1410 aaKnown RBP20.9■□□□□ 0.94
ERCC3-202ENST00000426778 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.93
ERCC3-202ENST00000426778 HMGXB3Q12766 1538 aa20.88■□□□□ 0.93
ERCC3-202ENST00000426778 CLSPNQ9HAW4 1339 aa20.86■□□□□ 0.93
ERCC3-202ENST00000426778 IGF1RP08069 1367 aa20.86■□□□□ 0.93
ERCC3-202ENST00000426778 RAB3GAP2Q9H2M9 1393 aa20.85■□□□□ 0.93
ERCC3-202ENST00000426778 SIN3AQ96ST3 1273 aa20.84■□□□□ 0.93
ERCC3-202ENST00000426778 HIRIP3Q9BW71 556 aaPredicted RBP20.83■□□□□ 0.93
ERCC3-202ENST00000426778 CARMIL1Q5VZK9 1371 aa20.8■□□□□ 0.92
ERCC3-202ENST00000426778 PHLDB1Q86UU1 1377 aa20.76■□□□□ 0.91
ERCC3-202ENST00000426778 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
ERCC3-202ENST00000426778 SUPT16HQ9Y5B9 1047 aaKnown RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms