RNA–Protein interactions for RNA: ENST00000420539.1

PTP4A1P1-201, Transcript of protein tyrosine phosphatase type IVA, member 1 pseudogene 1, humanhuman

BASIC

Gene PTP4A1P1, Length 515 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1P1-201ENST00000420539 AEBP2Q6ZN18 517 aaPredicted RBP19.7■□□□□ 0.74
PTP4A1P1-201ENST00000420539 CHIC1Q5VXU3 224 aa19.45■□□□□ 0.7
PTP4A1P1-201ENST00000420539 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
PTP4A1P1-201ENST00000420539 SENP3Q9H4L4 574 aaPredicted RBP16.72■□□□□ 0.27
PTP4A1P1-201ENST00000420539 PLPPR3Q6T4P5 718 aa15.93■□□□□ 0.14
PTP4A1P1-201ENST00000420539 FOXD1Q16676 465 aa15.55■□□□□ 0.08
PTP4A1P1-201ENST00000420539 ADRA2BP18089 450 aa15.11■□□□□ 0.01
PTP4A1P1-201ENST00000420539 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
PTP4A1P1-201ENST00000420539 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
PTP4A1P1-201ENST00000420539 MSH5O43196 834 aa14.37□□□□□ -0.11
PTP4A1P1-201ENST00000420539 KCNA4P22459 653 aa14.13□□□□□ -0.15
PTP4A1P1-201ENST00000420539 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
PTP4A1P1-201ENST00000420539 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
PTP4A1P1-201ENST00000420539 POTEDQ86YR6 584 aa13.75□□□□□ -0.21
PTP4A1P1-201ENST00000420539 SCAF1Q9H7N4 1312 aaKnown RBP13.74□□□□□ -0.21
PTP4A1P1-201ENST00000420539 MAPK8IP2Q13387 824 aaPredicted RBP13.63□□□□□ -0.23
PTP4A1P1-201ENST00000420539 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
PTP4A1P1-201ENST00000420539 CNKSR2Q8WXI2 1034 aa13.6□□□□□ -0.23
PTP4A1P1-201ENST00000420539 EHMT2Q96KQ7 1210 aa13.56□□□□□ -0.24
PTP4A1P1-201ENST00000420539 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
PTP4A1P1-201ENST00000420539 DMRT2Q9Y5R5 561 aa13.33□□□□□ -0.28
PTP4A1P1-201ENST00000420539 RNF216Q9NWF9 866 aaPredicted RBP13.25□□□□□ -0.29
PTP4A1P1-201ENST00000420539 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.3
PTP4A1P1-201ENST00000420539 HOXD11P31277 338 aaPredicted RBP13.1□□□□□ -0.31
PTP4A1P1-201ENST00000420539 ZBTB22O15209 634 aa13□□□□□ -0.33
PTP4A1P1-201ENST00000420539 DNAJC5BQ9UF47 199 aa12.99□□□□□ -0.33
PTP4A1P1-201ENST00000420539 FOXD4L1Q9NU39 408 aa12.89□□□□□ -0.35
PTP4A1P1-201ENST00000420539 DCAF8L1A6NGE4 600 aa12.86□□□□□ -0.35
PTP4A1P1-201ENST00000420539 SLC4A2P04920 1241 aa12.77□□□□□ -0.37
PTP4A1P1-201ENST00000420539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTP4A1P1-201ENST00000420539 MYCNP04198 464 aaPredicted RBP12.55□□□□□ -0.4
PTP4A1P1-201ENST00000420539 SLC24A1O60721 1099 aa12.46□□□□□ -0.41
PTP4A1P1-201ENST00000420539 U3KPZ7 1027 aaPredicted RBP12.39□□□□□ -0.43
PTP4A1P1-201ENST00000420539 ATXN8OSP0DMR3 200 aa12.33□□□□□ -0.44
PTP4A1P1-201ENST00000420539 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
PTP4A1P1-201ENST00000420539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.28□□□□□ -0.44
PTP4A1P1-201ENST00000420539 HNRNPUL2Q1KMD3 747 aaKnown RBP12.28□□□□□ -0.44
PTP4A1P1-201ENST00000420539 SAMD1Q6SPF0 538 aaPredicted RBP12.27□□□□□ -0.45
PTP4A1P1-201ENST00000420539 ATF5Q9Y2D1 282 aaPredicted RBP12.25□□□□□ -0.45
PTP4A1P1-201ENST00000420539 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
PTP4A1P1-201ENST00000420539 CACNB1Q02641 598 aaPredicted RBP12.1□□□□□ -0.47
PTP4A1P1-201ENST00000420539 APLP2Q06481 763 aa12.08□□□□□ -0.48
PTP4A1P1-201ENST00000420539 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
PTP4A1P1-201ENST00000420539 ZNF219Q9P2Y4 722 aaPredicted RBP12□□□□□ -0.49
PTP4A1P1-201ENST00000420539 TRHP20396 242 aaPredicted RBP11.98□□□□□ -0.49
PTP4A1P1-201ENST00000420539 CAPN15O75808 1086 aa11.96□□□□□ -0.49
PTP4A1P1-201ENST00000420539 FKBP8Q14318 412 aa11.94□□□□□ -0.5
PTP4A1P1-201ENST00000420539 POLA2Q14181 598 aa11.8□□□□□ -0.52
PTP4A1P1-201ENST00000420539 ABCB7O75027 752 aa11.77□□□□□ -0.53
PTP4A1P1-201ENST00000420539 FBLN2P98095 1184 aa11.7□□□□□ -0.54
PTP4A1P1-201ENST00000420539 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
PTP4A1P1-201ENST00000420539 DSG3P32926 999 aa11.68□□□□□ -0.54
PTP4A1P1-201ENST00000420539 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
PTP4A1P1-201ENST00000420539 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
PTP4A1P1-201ENST00000420539 ZBTB12Q9Y330 459 aaPredicted RBP11.56□□□□□ -0.56
PTP4A1P1-201ENST00000420539 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
PTP4A1P1-201ENST00000420539 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
PTP4A1P1-201ENST00000420539 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
PTP4A1P1-201ENST00000420539 PROM2Q8N271 834 aa11.34□□□□□ -0.59
PTP4A1P1-201ENST00000420539 FBXO3Q9UK99 471 aa11.34□□□□□ -0.59
PTP4A1P1-201ENST00000420539 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 SPDYE2Q495Y8 402 aa11.29□□□□□ -0.6
PTP4A1P1-201ENST00000420539 VASPP50552 380 aaPredicted RBP11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 PABPN1Q86U42 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 SSUH2Q9Y2M2 353 aa11.22□□□□□ -0.61
PTP4A1P1-201ENST00000420539 RBM42Q9BTD8 480 aaKnown RBP11.12□□□□□ -0.63
PTP4A1P1-201ENST00000420539 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
PTP4A1P1-201ENST00000420539 STAG3Q9UJ98 1225 aa11.05□□□□□ -0.64
PTP4A1P1-201ENST00000420539 KLHL34Q8N239 644 aa11.02□□□□□ -0.65
PTP4A1P1-201ENST00000420539 PLCD3Q8N3E9 789 aa11.02□□□□□ -0.65
PTP4A1P1-201ENST00000420539 MIER1Q8N108 512 aa10.99□□□□□ -0.65
PTP4A1P1-201ENST00000420539 AKT1S1Q96B36 256 aa10.96□□□□□ -0.65
PTP4A1P1-201ENST00000420539 CLEC11AQ9Y240 323 aa10.93□□□□□ -0.66
PTP4A1P1-201ENST00000420539 SPOCK2Q92563 424 aa10.91□□□□□ -0.66
PTP4A1P1-201ENST00000420539 SPDYE1Q8NFV5 336 aaPredicted RBP10.9□□□□□ -0.66
PTP4A1P1-201ENST00000420539 PLEKHG5O94827 1062 aa10.89□□□□□ -0.67
PTP4A1P1-201ENST00000420539 REM2Q8IYK8 340 aaPredicted RBP10.89□□□□□ -0.67
PTP4A1P1-201ENST00000420539 DAXXQ9UER7 740 aaPredicted RBP10.88□□□□□ -0.67
PTP4A1P1-201ENST00000420539 DCAF8L2P0C7V8 631 aa10.84□□□□□ -0.67
PTP4A1P1-201ENST00000420539 PRKCSHP14314 528 aaPredicted RBP10.83□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PRR29P0C7W0 189 aa10.82□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PKD2Q13563 968 aa10.82□□□□□ -0.68
PTP4A1P1-201ENST00000420539 ZBTB47Q9UFB7 747 aaPredicted RBP10.8□□□□□ -0.68
PTP4A1P1-201ENST00000420539 PITPNM1O00562 1244 aa10.78□□□□□ -0.68
PTP4A1P1-201ENST00000420539 CIZ1Q9ULV3 898 aaPredicted RBP10.76□□□□□ -0.69
PTP4A1P1-201ENST00000420539 ECM2O94769 699 aaPredicted RBP10.74□□□□□ -0.69
PTP4A1P1-201ENST00000420539 CREBZFQ9NS37 354 aa10.72□□□□□ -0.69
PTP4A1P1-201ENST00000420539 CHRDL2Q6WN34 429 aa10.71□□□□□ -0.69
PTP4A1P1-201ENST00000420539 POTEHQ6S545 545 aa10.69□□□□□ -0.7
PTP4A1P1-201ENST00000420539 TAOK2Q9UL54 1235 aa10.66□□□□□ -0.7
PTP4A1P1-201ENST00000420539 BCANQ96GW7 911 aa10.64□□□□□ -0.71
PTP4A1P1-201ENST00000420539 NUBP1P53384 320 aa10.63□□□□□ -0.71
PTP4A1P1-201ENST00000420539 CHADLQ6NUI6 762 aa10.63□□□□□ -0.71
PTP4A1P1-201ENST00000420539 RGL2O15211 777 aa10.62□□□□□ -0.71
PTP4A1P1-201ENST00000420539 DCAF8Q5TAQ9 597 aa10.62□□□□□ -0.71
PTP4A1P1-201ENST00000420539 MNX1P50219 401 aaPredicted RBP10.61□□□□□ -0.71
PTP4A1P1-201ENST00000420539 PLCB2Q00722 1185 aa10.59□□□□□ -0.71
PTP4A1P1-201ENST00000420539 GSE1Q14687 1217 aa10.58□□□□□ -0.72
PTP4A1P1-201ENST00000420539 FAM212AQ96EL1 285 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms