RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 AEBP2Q6ZN18 517 aaPredicted RBP13.18□□□□□ -0.3
VPS41-206ENST00000418457 CHIC1Q5VXU3 224 aa13□□□□□ -0.33
VPS41-206ENST00000418457 PHF23Q9BUL5 403 aaPredicted RBP11.42□□□□□ -0.58
VPS41-206ENST00000418457 SENP3Q9H4L4 574 aaPredicted RBP11.19□□□□□ -0.62
VPS41-206ENST00000418457 PLPPR3Q6T4P5 718 aa10.61□□□□□ -0.71
VPS41-206ENST00000418457 FOXD1Q16676 465 aa10.36□□□□□ -0.75
VPS41-206ENST00000418457 ADRA2BP18089 450 aa10.05□□□□□ -0.8
VPS41-206ENST00000418457 PPP6R1Q9UPN7 881 aa10.04□□□□□ -0.8
VPS41-206ENST00000418457 PIAS4Q8N2W9 510 aaPredicted RBP9.82□□□□□ -0.84
VPS41-206ENST00000418457 MSH5O43196 834 aa9.53□□□□□ -0.88
VPS41-206ENST00000418457 PPP4R3CPQ6ZMV5 832 aa9.36□□□□□ -0.91
VPS41-206ENST00000418457 KCNA4P22459 653 aa9.25□□□□□ -0.93
VPS41-206ENST00000418457 SCAF1Q9H7N4 1312 aaKnown RBP9.23□□□□□ -0.93
VPS41-206ENST00000418457 NCBP3Q53F19 620 aaKnown RBP9.16□□□□□ -0.94
VPS41-206ENST00000418457 MAPK8IP2Q13387 824 aaPredicted RBP9.08□□□□□ -0.96
VPS41-206ENST00000418457 CNKSR2Q8WXI2 1034 aa9.08□□□□□ -0.96
VPS41-206ENST00000418457 NPM3O75607 178 aaKnown RBP9□□□□□ -0.97
VPS41-206ENST00000418457 DMRT2Q9Y5R5 561 aa8.94□□□□□ -0.98
VPS41-206ENST00000418457 RNF216Q9NWF9 866 aaPredicted RBP8.87□□□□□ -0.99
VPS41-206ENST00000418457 SLC4A1APQ9BWU0 796 aaKnown RBP8.85□□□□□ -0.99
VPS41-206ENST00000418457 HOXD11P31277 338 aaPredicted RBP8.8□□□□□ -1
VPS41-206ENST00000418457 EHMT2Q96KQ7 1210 aa8.72□□□□□ -1.01
VPS41-206ENST00000418457 DNAJC5BQ9UF47 199 aa8.72□□□□□ -1.01
VPS41-206ENST00000418457 DCAF8L1A6NGE4 600 aa8.58□□□□□ -1.04
VPS41-206ENST00000418457 CSRNP3Q8WYN3 585 aa8.55□□□□□ -1.04
VPS41-206ENST00000418457 ZBTB22O15209 634 aa8.5□□□□□ -1.05
VPS41-206ENST00000418457 FOXD4L1Q9NU39 408 aa8.5□□□□□ -1.05
VPS41-206ENST00000418457 POTEDQ86YR6 584 aa8.48□□□□□ -1.05
VPS41-206ENST00000418457 SLC4A2P04920 1241 aa8.47□□□□□ -1.05
VPS41-206ENST00000418457 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.4□□□□□ -1.061e-6■■■■□ 19.8
VPS41-206ENST00000418457 MYCNP04198 464 aaPredicted RBP8.33□□□□□ -1.08
VPS41-206ENST00000418457 U3KPZ7 1027 aaPredicted RBP8.26□□□□□ -1.09
VPS41-206ENST00000418457 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.22□□□□□ -1.09
VPS41-206ENST00000418457 HNRNPUL2Q1KMD3 747 aaKnown RBP8.22□□□□□ -1.09
VPS41-206ENST00000418457 ATXN8OSP0DMR3 200 aa8.19□□□□□ -1.1
VPS41-206ENST00000418457 SAMD1Q6SPF0 538 aaPredicted RBP8.19□□□□□ -1.1
VPS41-206ENST00000418457 RNF39Q9H2S5 420 aa8.16□□□□□ -1.1
VPS41-206ENST00000418457 APLP2Q06481 763 aa8.12□□□□□ -1.11
VPS41-206ENST00000418457 C1QBPQ07021 282 aaKnown RBP8.08□□□□□ -1.12
VPS41-206ENST00000418457 ATF5Q9Y2D1 282 aaPredicted RBP8.08□□□□□ -1.12
VPS41-206ENST00000418457 SPINK5Q9NQ38 1064 aaPredicted RBP8□□□□□ -1.13
VPS41-206ENST00000418457 CAPN15O75808 1086 aa7.99□□□□□ -1.13
VPS41-206ENST00000418457 ZNF219Q9P2Y4 722 aaPredicted RBP7.98□□□□□ -1.13
VPS41-206ENST00000418457 TRHP20396 242 aaPredicted RBP7.97□□□□□ -1.13
VPS41-206ENST00000418457 CACNB1Q02641 598 aaPredicted RBP7.89□□□□□ -1.15
VPS41-206ENST00000418457 POLA2Q14181 598 aa7.85□□□□□ -1.15
VPS41-206ENST00000418457 ABCB7O75027 752 aa7.84□□□□□ -1.15
VPS41-206ENST00000418457 DSG3P32926 999 aa7.8□□□□□ -1.16
VPS41-206ENST00000418457 FBLN2P98095 1184 aa7.77□□□□□ -1.17
VPS41-206ENST00000418457 ZBTB12Q9Y330 459 aaPredicted RBP7.75□□□□□ -1.17
VPS41-206ENST00000418457 FKBP8Q14318 412 aa7.74□□□□□ -1.17
VPS41-206ENST00000418457 MKRN4PQ13434 485 aaPredicted RBP7.73□□□□□ -1.17
VPS41-206ENST00000418457 SPDYE4A6NLX3 237 aa7.63□□□□□ -1.19
VPS41-206ENST00000418457 OSCARQ8IYS5 282 aa7.58□□□□□ -1.2
VPS41-206ENST00000418457 SPDYE2BA6NHP3 402 aa7.54□□□□□ -1.2
VPS41-206ENST00000418457 SPDYE6P0CI01 402 aa7.54□□□□□ -1.2
VPS41-206ENST00000418457 SPDYE2Q495Y8 402 aa7.54□□□□□ -1.2
VPS41-206ENST00000418457 ZNF692Q9BU19 519 aaPredicted RBP7.53□□□□□ -1.2
VPS41-206ENST00000418457 PROM2Q8N271 834 aa7.5□□□□□ -1.21
VPS41-206ENST00000418457 SSUH2Q9Y2M2 353 aa7.48□□□□□ -1.21
VPS41-206ENST00000418457 RBM42Q9BTD8 480 aaKnown RBP7.46□□□□□ -1.22
VPS41-206ENST00000418457 FBXO3Q9UK99 471 aa7.45□□□□□ -1.22
VPS41-206ENST00000418457 PABPN1Q86U42 306 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS41-206ENST00000418457 AKT1S1Q96B36 256 aa7.38□□□□□ -1.23
VPS41-206ENST00000418457 STAG3Q9UJ98 1225 aa7.35□□□□□ -1.23
VPS41-206ENST00000418457 VASPP50552 380 aaPredicted RBP7.33□□□□□ -1.24
VPS41-206ENST00000418457 REM2Q8IYK8 340 aaPredicted RBP7.3□□□□□ -1.24
VPS41-206ENST00000418457 SPDYE1Q8NFV5 336 aaPredicted RBP7.3□□□□□ -1.24
VPS41-206ENST00000418457 CLEC11AQ9Y240 323 aa7.27□□□□□ -1.25
VPS41-206ENST00000418457 AMER1Q5JTC6 1135 aaPredicted RBP7.25□□□□□ -1.25
VPS41-206ENST00000418457 PLCD3Q8N3E9 789 aa7.25□□□□□ -1.25
VPS41-206ENST00000418457 MIER1Q8N108 512 aa7.24□□□□□ -1.25
VPS41-206ENST00000418457 IFNLR1Q8IU57 520 aaPredicted RBP7.23□□□□□ -1.25
VPS41-206ENST00000418457 PITPNM1O00562 1244 aa7.22□□□□□ -1.25
VPS41-206ENST00000418457 PLEKHG5O94827 1062 aa7.21□□□□□ -1.26
VPS41-206ENST00000418457 PRR29P0C7W0 189 aa7.21□□□□□ -1.26
VPS41-206ENST00000418457 RTN4Q9NQC3 1192 aaKnown RBP7.21□□□□□ -1.26
VPS41-206ENST00000418457 KLHL34Q8N239 644 aa7.2□□□□□ -1.26
VPS41-206ENST00000418457 ZBTB47Q9UFB7 747 aaPredicted RBP7.16□□□□□ -1.26
VPS41-206ENST00000418457 SPOCK2Q92563 424 aa7.14□□□□□ -1.27
VPS41-206ENST00000418457 CREBZFQ9NS37 354 aa7.12□□□□□ -1.27
VPS41-206ENST00000418457 CHRDL2Q6WN34 429 aa7.09□□□□□ -1.27
VPS41-206ENST00000418457 CHADLQ6NUI6 762 aa7.07□□□□□ -1.28
VPS41-206ENST00000418457 MNX1P50219 401 aaPredicted RBP7.06□□□□□ -1.28
VPS41-206ENST00000418457 FXR2P51116 673 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS41-206ENST00000418457 NPM1P06748 294 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS41-206ENST00000418457 PRKAR2AP13861 404 aaKnown RBP7.04□□□□□ -1.28
VPS41-206ENST00000418457 NUBP1P53384 320 aa7.02□□□□□ -1.29
VPS41-206ENST00000418457 PKD2Q13563 968 aa7.02□□□□□ -1.29
VPS41-206ENST00000418457 PIP4P2Q8N4L2 257 aa7.02□□□□□ -1.29
VPS41-206ENST00000418457 CIZ1Q9ULV3 898 aaPredicted RBP7.02□□□□□ -1.29
VPS41-206ENST00000418457 FARP1Q9Y4F1 1045 aaPredicted RBP7.01□□□□□ -1.29
VPS41-206ENST00000418457 GSE1Q14687 1217 aa6.99□□□□□ -1.29
VPS41-206ENST00000418457 ECM2O94769 699 aaPredicted RBP6.98□□□□□ -1.29
VPS41-206ENST00000418457 DCAF8Q5TAQ9 597 aa6.98□□□□□ -1.29
VPS41-206ENST00000418457 FAM212AQ96EL1 285 aa6.98□□□□□ -1.29
VPS41-206ENST00000418457 RASEFQ8IZ41 740 aa6.97□□□□□ -1.29
VPS41-206ENST00000418457 TRIM41Q8WV44 630 aa6.96□□□□□ -1.3
VPS41-206ENST00000418457 DCAF8L2P0C7V8 631 aa6.94□□□□□ -1.3
VPS41-206ENST00000418457 TSPYL2Q9H2G4 693 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms