RNA–Protein interactions for RNA: ENST00000416893.2

ATG4AP1-201, Transcript of autophagy related 4A cysteine peptidase pseudogene 1, humanhuman

BASIC

Gene ATG4AP1, Length 538 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AP1-201ENST00000416893 AEBP2Q6ZN18 517 aaPredicted RBP25.01■■□□□ 1.59
ATG4AP1-201ENST00000416893 CHIC1Q5VXU3 224 aa23.83■■□□□ 1.41
ATG4AP1-201ENST00000416893 SENP3Q9H4L4 574 aaPredicted RBP21.33■■□□□ 1.01
ATG4AP1-201ENST00000416893 PHF23Q9BUL5 403 aaPredicted RBP21.06■□□□□ 0.96
ATG4AP1-201ENST00000416893 FOXD1Q16676 465 aa19.87■□□□□ 0.77
ATG4AP1-201ENST00000416893 PLPPR3Q6T4P5 718 aa19.08■□□□□ 0.64
ATG4AP1-201ENST00000416893 PPP6R1Q9UPN7 881 aa18.63■□□□□ 0.57
ATG4AP1-201ENST00000416893 PIAS4Q8N2W9 510 aaPredicted RBP18.59■□□□□ 0.57
ATG4AP1-201ENST00000416893 MSH5O43196 834 aa18.58■□□□□ 0.56
ATG4AP1-201ENST00000416893 ADRA2BP18089 450 aa18.58■□□□□ 0.56
ATG4AP1-201ENST00000416893 POTEDQ86YR6 584 aa18■□□□□ 0.47
ATG4AP1-201ENST00000416893 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
ATG4AP1-201ENST00000416893 SCAF1Q9H7N4 1312 aaKnown RBP17■□□□□ 0.31
ATG4AP1-201ENST00000416893 DMRT2Q9Y5R5 561 aa16.93■□□□□ 0.3
ATG4AP1-201ENST00000416893 PPP4R3CPQ6ZMV5 832 aa16.73■□□□□ 0.27
ATG4AP1-201ENST00000416893 CNKSR2Q8WXI2 1034 aa16.41■□□□□ 0.22
ATG4AP1-201ENST00000416893 HOXD11P31277 338 aaPredicted RBP16.33■□□□□ 0.2
ATG4AP1-201ENST00000416893 RNF216Q9NWF9 866 aaPredicted RBP16.24■□□□□ 0.19
ATG4AP1-201ENST00000416893 DCAF8L1A6NGE4 600 aa16.23■□□□□ 0.19
ATG4AP1-201ENST00000416893 NCBP3Q53F19 620 aaKnown RBP16.12■□□□□ 0.17
ATG4AP1-201ENST00000416893 CACNB1Q02641 598 aaPredicted RBP15.89■□□□□ 0.13
ATG4AP1-201ENST00000416893 NPM3O75607 178 aaKnown RBP15.87■□□□□ 0.13
ATG4AP1-201ENST00000416893 RNF39Q9H2S5 420 aa15.85■□□□□ 0.13
ATG4AP1-201ENST00000416893 DNAJC5BQ9UF47 199 aa15.76■□□□□ 0.11
ATG4AP1-201ENST00000416893 KCNA4P22459 653 aa15.63■□□□□ 0.09
ATG4AP1-201ENST00000416893 C1QBPQ07021 282 aaKnown RBP15.63■□□□□ 0.09
ATG4AP1-201ENST00000416893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.57■□□□□ 0.08
ATG4AP1-201ENST00000416893 U3KPZ7 1027 aaPredicted RBP15.24■□□□□ 0.03
ATG4AP1-201ENST00000416893 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
ATG4AP1-201ENST00000416893 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
ATG4AP1-201ENST00000416893 CAPN15O75808 1086 aa14.98□□□□□ -0.01
ATG4AP1-201ENST00000416893 DSG3P32926 999 aa14.87□□□□□ -0.03
ATG4AP1-201ENST00000416893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
ATG4AP1-201ENST00000416893 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
ATG4AP1-201ENST00000416893 APLP2Q06481 763 aa14.84□□□□□ -0.03
ATG4AP1-201ENST00000416893 SLC4A1APQ9BWU0 796 aaKnown RBP14.78□□□□□ -0.04
ATG4AP1-201ENST00000416893 SAMD1Q6SPF0 538 aaPredicted RBP14.76□□□□□ -0.05
ATG4AP1-201ENST00000416893 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
ATG4AP1-201ENST00000416893 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
ATG4AP1-201ENST00000416893 MYCNP04198 464 aaPredicted RBP14.69□□□□□ -0.06
ATG4AP1-201ENST00000416893 ABCB7O75027 752 aa14.64□□□□□ -0.07
ATG4AP1-201ENST00000416893 FOXD4L1Q9NU39 408 aa14.57□□□□□ -0.08
ATG4AP1-201ENST00000416893 ZBTB22O15209 634 aa14.37□□□□□ -0.11
ATG4AP1-201ENST00000416893 POLA2Q14181 598 aa14.37□□□□□ -0.11
ATG4AP1-201ENST00000416893 ATF5Q9Y2D1 282 aaPredicted RBP14.33□□□□□ -0.12
ATG4AP1-201ENST00000416893 RBM42Q9BTD8 480 aaKnown RBP14.2□□□□□ -0.14
ATG4AP1-201ENST00000416893 POTEHQ6S545 545 aa14.13□□□□□ -0.15
ATG4AP1-201ENST00000416893 ATXN8OSP0DMR3 200 aa14.12□□□□□ -0.15
ATG4AP1-201ENST00000416893 ZBTB12Q9Y330 459 aaPredicted RBP14.1□□□□□ -0.15
ATG4AP1-201ENST00000416893 OSCARQ8IYS5 282 aa13.91□□□□□ -0.18
ATG4AP1-201ENST00000416893 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
ATG4AP1-201ENST00000416893 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
ATG4AP1-201ENST00000416893 FBLN2P98095 1184 aa13.78□□□□□ -0.2
ATG4AP1-201ENST00000416893 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
ATG4AP1-201ENST00000416893 REM2Q8IYK8 340 aaPredicted RBP13.75□□□□□ -0.21
ATG4AP1-201ENST00000416893 SPDYE2BA6NHP3 402 aa13.67□□□□□ -0.22
ATG4AP1-201ENST00000416893 SPDYE6P0CI01 402 aa13.67□□□□□ -0.22
ATG4AP1-201ENST00000416893 MKRN4PQ13434 485 aaPredicted RBP13.67□□□□□ -0.22
ATG4AP1-201ENST00000416893 SPDYE2Q495Y8 402 aa13.67□□□□□ -0.22
ATG4AP1-201ENST00000416893 EHMT2Q96KQ7 1210 aa13.64□□□□□ -0.23
ATG4AP1-201ENST00000416893 PITPNM1O00562 1244 aa13.6□□□□□ -0.23
ATG4AP1-201ENST00000416893 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
ATG4AP1-201ENST00000416893 ZNF692Q9BU19 519 aaPredicted RBP13.51□□□□□ -0.25
ATG4AP1-201ENST00000416893 SSUH2Q9Y2M2 353 aa13.49□□□□□ -0.25
ATG4AP1-201ENST00000416893 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.25
ATG4AP1-201ENST00000416893 SPDYE1Q8NFV5 336 aaPredicted RBP13.41□□□□□ -0.26
ATG4AP1-201ENST00000416893 CLEC11AQ9Y240 323 aa13.38□□□□□ -0.27
ATG4AP1-201ENST00000416893 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
ATG4AP1-201ENST00000416893 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
ATG4AP1-201ENST00000416893 HAX1O00165 279 aa13.27□□□□□ -0.29
ATG4AP1-201ENST00000416893 PRKAR2AP13861 404 aaKnown RBP13.25□□□□□ -0.29
ATG4AP1-201ENST00000416893 PRR29P0C7W0 189 aa13.18□□□□□ -0.3
ATG4AP1-201ENST00000416893 CHADLQ6NUI6 762 aa13.12□□□□□ -0.31
ATG4AP1-201ENST00000416893 EVX2Q03828 476 aa13.1□□□□□ -0.31
ATG4AP1-201ENST00000416893 SPDYE4A6NLX3 237 aa13.08□□□□□ -0.32
ATG4AP1-201ENST00000416893 C19orf67A6NJJ6 358 aa13.04□□□□□ -0.32
ATG4AP1-201ENST00000416893 STAG3Q9UJ98 1225 aa12.98□□□□□ -0.33
ATG4AP1-201ENST00000416893 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
ATG4AP1-201ENST00000416893 CREBZFQ9NS37 354 aa12.86□□□□□ -0.35
ATG4AP1-201ENST00000416893 CD44P16070 742 aaKnown RBP12.83□□□□□ -0.36
ATG4AP1-201ENST00000416893 GABBR2O75899 941 aa12.82□□□□□ -0.36
ATG4AP1-201ENST00000416893 PROM2Q8N271 834 aa12.77□□□□□ -0.37
ATG4AP1-201ENST00000416893 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
ATG4AP1-201ENST00000416893 CLCN6P51797 869 aa12.66□□□□□ -0.38
ATG4AP1-201ENST00000416893 MNX1P50219 401 aaPredicted RBP12.64□□□□□ -0.39
ATG4AP1-201ENST00000416893 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
ATG4AP1-201ENST00000416893 NPM1P06748 294 aaKnown RBP eCLIP12.63□□□□□ -0.39
ATG4AP1-201ENST00000416893 PAK3O75914 559 aaPredicted RBP12.58□□□□□ -0.4
ATG4AP1-201ENST00000416893 POTEIP0CG38 1075 aa12.54□□□□□ -0.4
ATG4AP1-201ENST00000416893 FKBP8Q14318 412 aa12.5□□□□□ -0.41
ATG4AP1-201ENST00000416893 DCBLD2Q96PD2 775 aa12.5□□□□□ -0.41
ATG4AP1-201ENST00000416893 PHF12Q96QT6 1004 aa12.49□□□□□ -0.41
ATG4AP1-201ENST00000416893 GALR2O43603 387 aaPredicted RBP12.48□□□□□ -0.41
ATG4AP1-201ENST00000416893 MIER1Q8N108 512 aa12.47□□□□□ -0.41
ATG4AP1-201ENST00000416893 PLEKHG5O94827 1062 aa12.46□□□□□ -0.41
ATG4AP1-201ENST00000416893 LHX8Q68G74 356 aa12.46□□□□□ -0.41
ATG4AP1-201ENST00000416893 TSPYL2Q9H2G4 693 aaPredicted RBP12.4□□□□□ -0.42
ATG4AP1-201ENST00000416893 PLCD3Q8N3E9 789 aa12.38□□□□□ -0.43
ATG4AP1-201ENST00000416893 CCDC61Q9Y6R9 512 aa12.34□□□□□ -0.43
ATG4AP1-201ENST00000416893 MS4A3Q96HJ5 214 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms