RNA–Protein interactions for RNA: ENST00000415294.2

LINC00343-202, long intergenic non-protein coding RNA 343, humanhuman

TSL 5 BASIC

Gene LINC00343, Length 1,320 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-202ENST00000415294 AEBP2Q6ZN18 517 aaPredicted RBP29.71■■■□□ 2.35
LINC00343-202ENST00000415294 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
LINC00343-202ENST00000415294 SENP3Q9H4L4 574 aaPredicted RBP25.38■■□□□ 1.65
LINC00343-202ENST00000415294 PHF23Q9BUL5 403 aaPredicted RBP25.05■■□□□ 1.6
LINC00343-202ENST00000415294 FOXD1Q16676 465 aa23.59■■□□□ 1.37
LINC00343-202ENST00000415294 PLPPR3Q6T4P5 718 aa22.93■■□□□ 1.26
LINC00343-202ENST00000415294 PPP6R1Q9UPN7 881 aa22.18■■□□□ 1.14
LINC00343-202ENST00000415294 ADRA2BP18089 450 aa22.15■■□□□ 1.14
LINC00343-202ENST00000415294 PIAS4Q8N2W9 510 aaPredicted RBP22.15■■□□□ 1.14
LINC00343-202ENST00000415294 MSH5O43196 834 aa22.06■■□□□ 1.12
LINC00343-202ENST00000415294 POTEDQ86YR6 584 aa21.19■□□□□ 0.98
LINC00343-202ENST00000415294 KCNA4P22459 653 aa20.42■□□□□ 0.86
LINC00343-202ENST00000415294 SCAF1Q9H7N4 1312 aaKnown RBP20.32■□□□□ 0.84
LINC00343-202ENST00000415294 MAPK8IP2Q13387 824 aaPredicted RBP20.27■□□□□ 0.84
LINC00343-202ENST00000415294 PPP4R3CPQ6ZMV5 832 aa20.22■□□□□ 0.83
LINC00343-202ENST00000415294 DMRT2Q9Y5R5 561 aa20.14■□□□□ 0.81
LINC00343-202ENST00000415294 NCBP3Q53F19 620 aaKnown RBP20■□□□□ 0.79
LINC00343-202ENST00000415294 EHMT2Q96KQ7 1210 aa19.68■□□□□ 0.74
LINC00343-202ENST00000415294 SLC4A1APQ9BWU0 796 aaKnown RBP19.62■□□□□ 0.73
LINC00343-202ENST00000415294 CNKSR2Q8WXI2 1034 aa19.6■□□□□ 0.73
LINC00343-202ENST00000415294 NPM3O75607 178 aaKnown RBP19.55■□□□□ 0.72
LINC00343-202ENST00000415294 HOXD11P31277 338 aaPredicted RBP19.45■□□□□ 0.7
LINC00343-202ENST00000415294 DCAF8L1A6NGE4 600 aa19.39■□□□□ 0.69
LINC00343-202ENST00000415294 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
LINC00343-202ENST00000415294 CSRNP3Q8WYN3 585 aa19.22■□□□□ 0.67
LINC00343-202ENST00000415294 DNAJC5BQ9UF47 199 aa19.12■□□□□ 0.65
LINC00343-202ENST00000415294 CACNB1Q02641 598 aaPredicted RBP18.83■□□□□ 0.61
LINC00343-202ENST00000415294 RNF39Q9H2S5 420 aa18.8■□□□□ 0.6
LINC00343-202ENST00000415294 ZBTB22O15209 634 aa18.75■□□□□ 0.59
LINC00343-202ENST00000415294 FOXD4L1Q9NU39 408 aa18.7■□□□□ 0.58
LINC00343-202ENST00000415294 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.6■□□□□ 0.57
LINC00343-202ENST00000415294 C1QBPQ07021 282 aaKnown RBP18.56■□□□□ 0.56
LINC00343-202ENST00000415294 SLC4A2P04920 1241 aa18.3■□□□□ 0.52
LINC00343-202ENST00000415294 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
LINC00343-202ENST00000415294 MYCNP04198 464 aaPredicted RBP18.15■□□□□ 0.5
LINC00343-202ENST00000415294 ATXN8OSP0DMR3 200 aa18.09■□□□□ 0.49
LINC00343-202ENST00000415294 CAPN15O75808 1086 aa17.88■□□□□ 0.45
LINC00343-202ENST00000415294 SPINK5Q9NQ38 1064 aaPredicted RBP17.87■□□□□ 0.45
LINC00343-202ENST00000415294 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.8■□□□□ 0.44
LINC00343-202ENST00000415294 HNRNPUL2Q1KMD3 747 aaKnown RBP17.8■□□□□ 0.44
LINC00343-202ENST00000415294 APLP2Q06481 763 aa17.77■□□□□ 0.44
LINC00343-202ENST00000415294 SAMD1Q6SPF0 538 aaPredicted RBP17.72■□□□□ 0.43
LINC00343-202ENST00000415294 DSG3P32926 999 aa17.67■□□□□ 0.42
LINC00343-202ENST00000415294 TRHP20396 242 aaPredicted RBP17.64■□□□□ 0.41
LINC00343-202ENST00000415294 ZNF219Q9P2Y4 722 aaPredicted RBP17.6■□□□□ 0.41
LINC00343-202ENST00000415294 ABCB7O75027 752 aa17.47■□□□□ 0.39
LINC00343-202ENST00000415294 ATF5Q9Y2D1 282 aaPredicted RBP17.44■□□□□ 0.38
LINC00343-202ENST00000415294 FKBP8Q14318 412 aa17.33■□□□□ 0.36
LINC00343-202ENST00000415294 POLA2Q14181 598 aa17.18■□□□□ 0.34
LINC00343-202ENST00000415294 AMER1Q5JTC6 1135 aaPredicted RBP17.03■□□□□ 0.32
LINC00343-202ENST00000415294 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
LINC00343-202ENST00000415294 ZBTB12Q9Y330 459 aaPredicted RBP16.88■□□□□ 0.29
LINC00343-202ENST00000415294 FBLN2P98095 1184 aa16.86■□□□□ 0.29
LINC00343-202ENST00000415294 RTN4Q9NQC3 1192 aaKnown RBP16.86■□□□□ 0.29
LINC00343-202ENST00000415294 SPDYE4A6NLX3 237 aa16.76■□□□□ 0.27
LINC00343-202ENST00000415294 MKRN4PQ13434 485 aaPredicted RBP16.76■□□□□ 0.27
LINC00343-202ENST00000415294 FBXO3Q9UK99 471 aa16.7■□□□□ 0.26
LINC00343-202ENST00000415294 POTEHQ6S545 545 aa16.66■□□□□ 0.26
LINC00343-202ENST00000415294 OSCARQ8IYS5 282 aa16.65■□□□□ 0.26
LINC00343-202ENST00000415294 PROM2Q8N271 834 aa16.64■□□□□ 0.25
LINC00343-202ENST00000415294 AKT1S1Q96B36 256 aa16.53■□□□□ 0.24
LINC00343-202ENST00000415294 CHRDL2Q6WN34 429 aa16.45■□□□□ 0.22
LINC00343-202ENST00000415294 VASPP50552 380 aaPredicted RBP16.37■□□□□ 0.21
LINC00343-202ENST00000415294 REM2Q8IYK8 340 aaPredicted RBP16.37■□□□□ 0.21
LINC00343-202ENST00000415294 SPDYE2BA6NHP3 402 aa16.34■□□□□ 0.21
LINC00343-202ENST00000415294 SLC24A1O60721 1099 aa16.34■□□□□ 0.21
LINC00343-202ENST00000415294 SPDYE6P0CI01 402 aa16.34■□□□□ 0.21
LINC00343-202ENST00000415294 SPDYE2Q495Y8 402 aa16.34■□□□□ 0.21
LINC00343-202ENST00000415294 ZNF692Q9BU19 519 aaPredicted RBP16.22■□□□□ 0.19
LINC00343-202ENST00000415294 PITPNM1O00562 1244 aa16.2■□□□□ 0.18
LINC00343-202ENST00000415294 SSUH2Q9Y2M2 353 aa16.18■□□□□ 0.18
LINC00343-202ENST00000415294 STAG3Q9UJ98 1225 aa16.14■□□□□ 0.17
LINC00343-202ENST00000415294 IFNLR1Q8IU57 520 aaPredicted RBP16.13■□□□□ 0.17
LINC00343-202ENST00000415294 PIP4P2Q8N4L2 257 aa16.08■□□□□ 0.16
LINC00343-202ENST00000415294 SPDYE1Q8NFV5 336 aaPredicted RBP16.03■□□□□ 0.16
LINC00343-202ENST00000415294 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
LINC00343-202ENST00000415294 CLEC11AQ9Y240 323 aa16.01■□□□□ 0.15
LINC00343-202ENST00000415294 FXR2P51116 673 aaKnown RBP eCLIP15.99■□□□□ 0.15
LINC00343-202ENST00000415294 SPOCK2Q92563 424 aa15.93■□□□□ 0.14
LINC00343-202ENST00000415294 KLHL34Q8N239 644 aa15.91■□□□□ 0.14
LINC00343-202ENST00000415294 PLCD3Q8N3E9 789 aa15.89■□□□□ 0.13
LINC00343-202ENST00000415294 PKD2Q13563 968 aa15.84■□□□□ 0.13
LINC00343-202ENST00000415294 PLEKHG5O94827 1062 aa15.82■□□□□ 0.12
LINC00343-202ENST00000415294 MIER1Q8N108 512 aa15.81■□□□□ 0.12
LINC00343-202ENST00000415294 PRKAR2AP13861 404 aaKnown RBP15.8■□□□□ 0.12
LINC00343-202ENST00000415294 ZBTB47Q9UFB7 747 aaPredicted RBP15.8■□□□□ 0.12
LINC00343-202ENST00000415294 HAX1O00165 279 aa15.78■□□□□ 0.12
LINC00343-202ENST00000415294 PRR29P0C7W0 189 aa15.76■□□□□ 0.11
LINC00343-202ENST00000415294 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
LINC00343-202ENST00000415294 DCAF8L2P0C7V8 631 aa15.69■□□□□ 0.1
LINC00343-202ENST00000415294 PLCB2Q00722 1185 aa15.68■□□□□ 0.1
LINC00343-202ENST00000415294 ECM2O94769 699 aaPredicted RBP15.66■□□□□ 0.1
LINC00343-202ENST00000415294 CHADLQ6NUI6 762 aa15.65■□□□□ 0.1
LINC00343-202ENST00000415294 TRIM41Q8WV44 630 aa15.56■□□□□ 0.08
LINC00343-202ENST00000415294 EVX2Q03828 476 aa15.52■□□□□ 0.08
LINC00343-202ENST00000415294 C19orf67A6NJJ6 358 aa15.48■□□□□ 0.07
LINC00343-202ENST00000415294 CIZ1Q9ULV3 898 aaPredicted RBP15.48■□□□□ 0.07
LINC00343-202ENST00000415294 BBXQ8WY36 941 aaPredicted RBP15.47■□□□□ 0.07
LINC00343-202ENST00000415294 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.46■□□□□ 0.07
LINC00343-202ENST00000415294 GSE1Q14687 1217 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms