RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NISCHQ9Y2I1 1504 aa20.62■□□□□ 0.89
SS18-203ENST00000415083 SHROOM4Q9ULL8 1493 aa17.61■□□□□ 0.41
SS18-203ENST00000415083 ZCCHC6Q5VYS8 1495 aaKnown RBP17.49■□□□□ 0.39
SS18-203ENST00000415083 CCDC180Q9P1Z9 1646 aa17.48■□□□□ 0.39
SS18-203ENST00000415083 SUPT5HO00267 1087 aaKnown RBP17.22■□□□□ 0.35
SS18-203ENST00000415083 MYO15BQ96JP2 1530 aa17.06■□□□□ 0.32
SS18-203ENST00000415083 CHIC1Q5VXU3 224 aa16.89■□□□□ 0.29
SS18-203ENST00000415083 DCAF1Q9Y4B6 1507 aa16.89■□□□□ 0.29
SS18-203ENST00000415083 DCAF8L2P0C7V8 631 aa16.84■□□□□ 0.29
SS18-203ENST00000415083 ABCC9O60706 1549 aa16.54■□□□□ 0.24
SS18-203ENST00000415083 HRCP23327 699 aa16.48■□□□□ 0.23
SS18-203ENST00000415083 LOC105371045A0A1W2PR82 267 aa16.44■□□□□ 0.22
SS18-203ENST00000415083 SCRIBQ14160 1630 aa16.43■□□□□ 0.22
SS18-203ENST00000415083 PCGF6Q9BYE7 350 aa16.39■□□□□ 0.21
SS18-203ENST00000415083 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
SS18-203ENST00000415083 RB1CC1Q8TDY2 1594 aa16.29■□□□□ 0.2
SS18-203ENST00000415083 PPARGC1BQ86YN6 1023 aaKnown RBP16.27■□□□□ 0.19
SS18-203ENST00000415083 CECR2Q9BXF3 1484 aa16.16■□□□□ 0.18
SS18-203ENST00000415083 MROH2BQ7Z745 1585 aa16.1■□□□□ 0.17
SS18-203ENST00000415083 NACADO15069 1562 aa16.06■□□□□ 0.16
SS18-203ENST00000415083 WIZO95785 1651 aa16.05■□□□□ 0.16
SS18-203ENST00000415083 TRIM26Q12899 539 aaPredicted RBP16■□□□□ 0.15
SS18-203ENST00000415083 EIF4G1Q04637 1599 aaKnown RBP15.97■□□□□ 0.15
SS18-203ENST00000415083 TRIM41Q8WV44 630 aa15.97■□□□□ 0.15
SS18-203ENST00000415083 FAM9AQ8IZU1 332 aaPredicted RBP15.91■□□□□ 0.14
SS18-203ENST00000415083 BAZ1AQ9NRL2 1556 aaPredicted RBP15.88■□□□□ 0.13
SS18-203ENST00000415083 UNC13AQ9UPW8 1703 aa15.83■□□□□ 0.12
SS18-203ENST00000415083 EHMT2Q96KQ7 1210 aa15.81■□□□□ 0.12
SS18-203ENST00000415083 SMARCA4P51532 1647 aa15.71■□□□□ 0.11
SS18-203ENST00000415083 ABCC8Q09428 1581 aa15.71■□□□□ 0.1
SS18-203ENST00000415083 TOP2AP11388 1531 aaKnown RBP15.69■□□□□ 0.1
SS18-203ENST00000415083 SMARCA2P51531 1590 aa15.68■□□□□ 0.1
SS18-203ENST00000415083 CCDC88BA6NC98 1476 aa15.66■□□□□ 0.1
SS18-203ENST00000415083 BICRAQ9NZM4 1560 aa15.56■□□□□ 0.08
SS18-203ENST00000415083 SOGA1O94964 1423 aa15.54■□□□□ 0.08
SS18-203ENST00000415083 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
SS18-203ENST00000415083 ZEB1P37275 1124 aaPredicted RBP15.53■□□□□ 0.08
SS18-203ENST00000415083 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
SS18-203ENST00000415083 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
SS18-203ENST00000415083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.43■□□□□ 0.06
SS18-203ENST00000415083 PEG3Q9GZU2 1588 aa15.41■□□□□ 0.06
SS18-203ENST00000415083 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
SS18-203ENST00000415083 SYNJ1O43426 1573 aa15.37■□□□□ 0.05
SS18-203ENST00000415083 TNIKQ9UKE5 1360 aa15.36■□□□□ 0.05
SS18-203ENST00000415083 SCAF1Q9H7N4 1312 aaKnown RBP15.34■□□□□ 0.05
SS18-203ENST00000415083 TTBK1Q5TCY1 1321 aaPredicted RBP15.3■□□□□ 0.04
SS18-203ENST00000415083 CSRNP3Q8WYN3 585 aa15.29■□□□□ 0.04
SS18-203ENST00000415083 EEA1Q15075 1411 aa15.26■□□□□ 0.03
SS18-203ENST00000415083 ATAD2BQ9ULI0 1458 aa15.24■□□□□ 0.03
SS18-203ENST00000415083 CCER1Q8TC90 406 aaPredicted RBP15.24■□□□□ 0.03
SS18-203ENST00000415083 GOLGA3Q08378 1498 aa15.24■□□□□ 0.03
SS18-203ENST00000415083 KIF21BO75037 1637 aa15.22■□□□□ 0.03
SS18-203ENST00000415083 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
SS18-203ENST00000415083 RAPGEF2Q9Y4G8 1499 aa15.14■□□□□ 0.01
SS18-203ENST00000415083 CEP164Q9UPV0 1460 aa15.13■□□□□ 0.01
SS18-203ENST00000415083 BAZ1BQ9UIG0 1483 aaKnown RBP15.13■□□□□ 0.01
SS18-203ENST00000415083 NEUROD1Q13562 356 aa15.1■□□□□ 0.01
SS18-203ENST00000415083 TOP2BQ02880 1626 aa15.1■□□□□ 0.01
SS18-203ENST00000415083 CLIP1P30622 1438 aa15.08■□□□□ 0
SS18-203ENST00000415083 BIVM-ERCC5R4GMW8 1640 aa15.08■□□□□ 0
SS18-203ENST00000415083 DIEXFQ68CQ4 756 aaKnown RBP15.05■□□□□ -0
SS18-203ENST00000415083 VPS8Q8N3P4 1428 aa15.05■□□□□ -0
SS18-203ENST00000415083 ACIN1Q9UKV3 1341 aaKnown RBP15.03■□□□□ -0
SS18-203ENST00000415083 CUX1P39880 1505 aa14.97□□□□□ -0.01
SS18-203ENST00000415083 ARAP1Q96P48 1450 aa14.97□□□□□ -0.01
SS18-203ENST00000415083 PRXQ9BXM0 1461 aa14.97□□□□□ -0.01
SS18-203ENST00000415083 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
SS18-203ENST00000415083 ZNF316A6NFI3 1004 aaPredicted RBP14.92□□□□□ -0.02
SS18-203ENST00000415083 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
SS18-203ENST00000415083 HMGXB3Q12766 1538 aa14.91□□□□□ -0.02
SS18-203ENST00000415083 RANGAP1P46060 587 aaPredicted RBP14.9□□□□□ -0.02
SS18-203ENST00000415083 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
SS18-203ENST00000415083 KANK4Q5T7N3 995 aaPredicted RBP14.86□□□□□ -0.03
SS18-203ENST00000415083 PELP1Q8IZL8 1130 aaKnown RBP14.86□□□□□ -0.03
SS18-203ENST00000415083 GTF3C3Q9Y5Q9 886 aa14.86□□□□□ -0.03
SS18-203ENST00000415083 CFTRP13569 1480 aa14.83□□□□□ -0.04
SS18-203ENST00000415083 MIER1Q8N108 512 aa14.83□□□□□ -0.04
SS18-203ENST00000415083 DHX57Q6P158 1386 aaKnown RBP14.8□□□□□ -0.04
SS18-203ENST00000415083 PRDM2Q13029 1718 aa14.8□□□□□ -0.04
SS18-203ENST00000415083 ARHGAP35Q9NRY4 1499 aa14.79□□□□□ -0.04
SS18-203ENST00000415083 RRBP1Q9P2E9 1410 aaKnown RBP14.76□□□□□ -0.05
SS18-203ENST00000415083 KIF27Q86VH2 1401 aa14.73□□□□□ -0.05
SS18-203ENST00000415083 CUX2O14529 1486 aa14.72□□□□□ -0.05
SS18-203ENST00000415083 CENPBP07199 599 aaPredicted RBP14.7□□□□□ -0.06
SS18-203ENST00000415083 YTHDC1Q96MU7 727 aaKnown RBP14.7□□□□□ -0.06
SS18-203ENST00000415083 IGF1RP08069 1367 aa14.68□□□□□ -0.06
SS18-203ENST00000415083 APLP2Q06481 763 aa14.68□□□□□ -0.06
SS18-203ENST00000415083 MAPKBP1O60336 1514 aa14.63□□□□□ -0.07
SS18-203ENST00000415083 TIAM1Q13009 1591 aa14.62□□□□□ -0.07
SS18-203ENST00000415083 FGD5Q6ZNL6 1462 aa14.62□□□□□ -0.07
SS18-203ENST00000415083 CLSPNQ9HAW4 1339 aa14.61□□□□□ -0.07
SS18-203ENST00000415083 CCNB3Q8WWL7 1395 aa14.61□□□□□ -0.07
SS18-203ENST00000415083 CADPSQ9ULU8 1353 aa14.58□□□□□ -0.08
SS18-203ENST00000415083 MAP3K1Q13233 1512 aa14.56□□□□□ -0.08
SS18-203ENST00000415083 CFAP43Q8NDM7 1665 aa14.55□□□□□ -0.08
SS18-203ENST00000415083 PHLDB1Q86UU1 1377 aa14.55□□□□□ -0.08
SS18-203ENST00000415083 PCF11O94913 1555 aaKnown RBP14.55□□□□□ -0.08
SS18-203ENST00000415083 CARMIL1Q5VZK9 1371 aa14.54□□□□□ -0.08
SS18-203ENST00000415083 LRRC9Q6ZRR7 1453 aa14.54□□□□□ -0.08
SS18-203ENST00000415083 RAB3GAP2Q9H2M9 1393 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms